Wall clock time and date at job start Mon Mar 30 2020 06:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39347 * 119.93801 * 2 1 4 4 C 1.38914 * 118.95205 * 179.73501 * 3 2 1 5 5 C 1.37687 * 120.83386 * 0.54276 * 4 3 2 6 6 C 1.38368 * 119.92682 * 359.72484 * 5 4 3 7 7 C 1.38055 * 119.93956 * 180.27245 * 2 1 3 8 8 Cl 1.73606 * 119.82520 * 0.02562 * 7 2 1 9 9 C 1.51148 * 106.33564 * 180.31341 * 4 3 2 10 10 C 1.52988 * 110.51141 * 118.89379 * 9 4 3 11 11 C 1.50707 * 110.50961 * 241.60309 * 9 4 3 12 12 H 1.08005 * 119.99479 * 359.97438 * 11 9 4 13 13 C 1.37873 * 120.00057 * 180.02562 * 11 9 4 14 14 N 1.31513 * 119.99864 * 359.97438 * 13 11 9 15 15 Si 1.86799 * 119.99887 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.46948 * 90.00169 * 15 13 11 17 17 H 1.48503 * 109.47082 * 209.99843 * 15 13 11 18 18 H 1.48495 * 109.47201 * 329.99723 * 15 13 11 19 19 C 1.51404 * 104.06649 * 359.63871 * 9 4 3 20 20 O 1.21285 * 126.43785 * 180.02562 * 19 9 4 21 21 N 1.34369 * 107.11252 * 0.50313 * 19 9 4 22 22 H 1.09002 * 109.47152 * 269.72729 * 1 2 3 23 23 H 1.09001 * 109.46980 * 149.72829 * 1 2 3 24 24 H 1.09004 * 109.47113 * 29.72810 * 1 2 3 25 25 H 1.08001 * 120.03677 * 179.74530 * 5 4 3 26 26 H 1.08008 * 120.09297 * 179.97438 * 6 5 4 27 27 H 1.09005 * 109.47550 * 59.99655 * 10 9 4 28 28 H 1.09001 * 109.47641 * 179.97438 * 10 9 4 29 29 H 1.09004 * 109.47394 * 299.99808 * 10 9 4 30 30 H 0.97003 * 120.00314 * 179.97438 * 14 13 11 31 31 H 0.97001 * 123.87422 * 179.52165 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2025 1.2075 0.0000 4 6 3.5914 1.1836 0.0056 5 6 4.2767 -0.0106 -0.0001 6 6 3.5802 -1.2061 -0.0058 7 6 2.1960 -1.1963 -0.0057 8 17 1.3218 -2.6962 -0.0135 9 6 4.0414 2.6266 0.0120 10 6 4.8568 2.9282 1.2709 11 6 4.8445 2.9347 -1.2254 12 1 5.0218 2.1631 -1.9601 13 6 5.3538 4.2012 -1.4191 14 7 5.1384 5.1405 -0.5241 15 14 6.3499 4.5829 -2.9525 16 1 5.4412 5.0532 -4.0287 17 1 7.3442 5.6425 -2.6459 18 1 7.0563 3.3564 -3.4019 19 6 2.7490 3.4151 0.0000 20 8 2.6422 4.6233 0.0000 21 7 1.7425 2.5248 -0.0001 22 1 -0.3633 -0.0049 1.0277 23 1 -0.3633 -0.8876 -0.5181 24 1 -0.3633 0.8924 -0.5096 25 1 5.3567 -0.0141 0.0002 26 1 4.1150 -2.1445 -0.0107 27 1 5.7352 2.2834 1.2981 28 1 5.1726 3.9714 1.2580 29 1 4.2439 2.7447 2.1534 30 1 5.4970 6.0315 -0.6601 31 1 0.8040 2.7698 -0.0001 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259771325.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:54 Heat of formation + Delta-G solvation = -9.754008 kcal Electronic energy + Delta-G solvation = -18008.616664 eV Core-core repulsion = 15087.844473 eV Total energy + Delta-G solvation = -2920.772191 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.76213 -37.80719 -36.23213 -34.48187 -34.16756 -32.36523 -30.38981 -28.07239 -26.47315 -25.44604 -23.78495 -21.72311 -20.42143 -19.19027 -17.36884 -16.27664 -15.77807 -15.52804 -14.61473 -14.43972 -14.35841 -13.50595 -13.32050 -13.12748 -12.86363 -12.40301 -12.21437 -12.00577 -11.51735 -11.39385 -11.23596 -11.15223 -10.93117 -10.71818 -10.61535 -10.33306 -9.94157 -9.74524 -9.49038 -8.68837 -8.41717 -8.10033 -7.31647 -6.06736 -4.23397 1.63433 1.68844 2.34547 3.25364 3.32678 3.34464 3.69669 3.88766 4.28030 4.34938 5.01457 5.11553 5.22512 5.29522 5.63828 5.73327 5.74547 5.89214 5.92533 5.97365 6.33216 6.52865 6.60858 6.72445 6.80420 6.93830 7.12468 7.21178 7.57349 7.68438 7.76140 7.89937 8.11228 8.73531 9.29253 9.41483 10.91462 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.028570 B = 0.006530 C = 0.005946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.827005 B = 4286.574369 C = 4707.589744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.120 4.120 3 C 0.162 3.838 4 C -0.088 4.088 5 C -0.062 4.062 6 C -0.141 4.141 7 C -0.017 4.017 8 Cl -0.084 7.084 9 C 0.086 3.914 10 C -0.120 4.120 11 C -0.524 4.524 12 H 0.067 0.933 13 C 0.072 3.928 14 N -0.838 5.838 15 Si 0.898 3.102 16 H -0.280 1.280 17 H -0.284 1.284 18 H -0.271 1.271 19 C 0.529 3.471 20 O -0.471 6.471 21 N -0.678 5.678 22 H 0.067 0.933 23 H 0.071 0.929 24 H 0.060 0.940 25 H 0.134 0.866 26 H 0.129 0.871 27 H 0.044 0.956 28 H 0.100 0.900 29 H 0.014 0.986 30 H 0.264 0.736 31 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.243 -11.174 2.175 12.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.124 4.124 3 C 0.063 3.937 4 C -0.091 4.091 5 C -0.081 4.081 6 C -0.161 4.161 7 C -0.044 4.044 8 Cl -0.055 7.055 9 C 0.082 3.918 10 C -0.178 4.178 11 C -0.561 4.561 12 H 0.086 0.914 13 C -0.135 4.135 14 N -0.471 5.471 15 Si 0.725 3.275 16 H -0.206 1.206 17 H -0.209 1.209 18 H -0.196 1.196 19 C 0.318 3.682 20 O -0.340 6.340 21 N -0.323 5.323 22 H 0.086 0.914 23 H 0.090 0.910 24 H 0.079 0.921 25 H 0.151 0.849 26 H 0.147 0.853 27 H 0.063 0.937 28 H 0.118 0.882 29 H 0.033 0.967 30 H 0.074 0.926 31 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -5.213 -10.255 2.235 11.719 hybrid contribution -0.215 0.153 -0.955 0.991 sum -5.428 -10.102 1.279 11.539 Atomic orbital electron populations 1.20688 0.90970 1.02765 1.02192 1.18727 0.95806 0.89342 1.08559 1.17826 0.93418 0.84412 0.98044 1.20627 0.92047 0.97356 0.99058 1.20189 1.00193 0.89577 0.98103 1.20787 0.91427 0.98613 1.05286 1.20127 0.91804 0.85190 1.07314 1.98312 1.77120 1.32913 1.97165 1.17797 0.91427 0.84280 0.98293 1.21630 0.97821 1.05492 0.92822 1.20568 1.33995 0.97082 1.04447 0.91443 1.25050 0.95661 0.96087 0.96738 1.69965 1.41300 1.02590 1.33266 0.86502 0.79831 0.78254 0.82957 1.20621 1.20927 1.19608 1.21941 0.86300 0.86909 0.73039 1.90694 1.85004 1.11956 1.46311 1.44388 1.09982 1.04822 1.73059 0.91396 0.91024 0.92082 0.84865 0.85320 0.93729 0.88192 0.96737 0.92560 0.77279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.41 9.56 36.01 0.34 -1.07 16 2 C -0.12 -1.93 5.91 -104.28 -0.62 -2.54 16 3 C 0.16 3.08 6.81 -83.69 -0.57 2.51 16 4 C -0.09 -1.79 4.95 -104.35 -0.52 -2.31 16 5 C -0.06 -1.07 10.03 -39.73 -0.40 -1.47 16 6 C -0.14 -2.14 9.84 -39.47 -0.39 -2.53 16 7 C -0.02 -0.27 6.30 -39.58 -0.25 -0.51 16 8 Cl -0.08 -1.08 27.25 -51.86 -1.41 -2.49 16 9 C 0.09 2.04 0.66 -157.40 -0.10 1.94 16 10 C -0.12 -2.76 8.45 37.15 0.31 -2.45 16 11 C -0.52 -13.68 8.06 -34.44 -0.28 -13.96 16 12 H 0.07 1.75 7.77 -52.48 -0.41 1.34 16 13 C 0.07 1.93 5.16 -17.82 -0.09 1.84 16 14 N -0.84 -23.32 9.17 55.43 0.51 -22.81 16 15 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 16 16 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 18 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 19 C 0.53 12.98 7.19 -10.82 -0.08 12.91 16 20 O -0.47 -13.11 16.01 5.55 0.09 -13.02 16 21 N -0.68 -13.53 5.80 -9.70 -0.06 -13.59 16 22 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 23 H 0.07 0.85 6.87 -51.93 -0.36 0.50 16 24 H 0.06 0.75 7.57 -51.93 -0.39 0.35 16 25 H 0.13 2.14 8.06 -52.49 -0.42 1.72 16 26 H 0.13 1.61 8.06 -52.48 -0.42 1.19 16 27 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.10 2.58 5.89 -51.93 -0.31 2.27 16 29 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.26 7.08 8.31 -40.82 -0.34 6.75 16 31 H 0.39 6.61 8.47 -40.82 -0.35 6.26 16 LS Contribution 277.46 15.07 4.18 4.18 Total: -1.00 -29.08 277.46 -7.40 -36.48 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -3.06 Total: 3.21 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: -2.63 Total: -7.64 kcal Atomic # 7 Polarization: -36.85 SS G_CDS: 0.45 Total: -36.40 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: 0.09 Total: -13.02 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 17 Polarization: -1.08 SS G_CDS: -1.41 Total: -2.49 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -29.08 -7.40 -36.48 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259771325.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.726 kcal (2) G-P(sol) polarization free energy of solvation -29.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds