Wall clock time and date at job start Mon Mar 30 2020 06:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39347 * 119.93801 * 2 1 4 4 C 1.38914 * 118.95205 * 179.73501 * 3 2 1 5 5 C 1.37687 * 120.83386 * 0.54276 * 4 3 2 6 6 C 1.38368 * 119.92682 * 359.72484 * 5 4 3 7 7 C 1.38055 * 119.93956 * 180.27245 * 2 1 3 8 8 Cl 1.73606 * 119.82520 * 0.02562 * 7 2 1 9 9 C 1.51148 * 106.33564 * 180.31341 * 4 3 2 10 10 C 1.52988 * 110.51141 * 118.89379 * 9 4 3 11 11 C 1.50707 * 110.50961 * 241.60309 * 9 4 3 12 12 H 1.08005 * 119.99479 * 359.97438 * 11 9 4 13 13 C 1.37873 * 120.00057 * 180.02562 * 11 9 4 14 14 N 1.31513 * 119.99864 * 359.97438 * 13 11 9 15 15 Si 1.86799 * 119.99887 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.46948 * 90.00169 * 15 13 11 17 17 H 1.48503 * 109.47082 * 209.99843 * 15 13 11 18 18 H 1.48495 * 109.47201 * 329.99723 * 15 13 11 19 19 C 1.51404 * 104.06649 * 359.63871 * 9 4 3 20 20 O 1.21285 * 126.43785 * 180.02562 * 19 9 4 21 21 N 1.34369 * 107.11252 * 0.50313 * 19 9 4 22 22 H 1.09002 * 109.47152 * 269.72729 * 1 2 3 23 23 H 1.09001 * 109.46980 * 149.72829 * 1 2 3 24 24 H 1.09004 * 109.47113 * 29.72810 * 1 2 3 25 25 H 1.08001 * 120.03677 * 179.74530 * 5 4 3 26 26 H 1.08008 * 120.09297 * 179.97438 * 6 5 4 27 27 H 1.09005 * 109.47550 * 59.99655 * 10 9 4 28 28 H 1.09001 * 109.47641 * 179.97438 * 10 9 4 29 29 H 1.09004 * 109.47394 * 299.99808 * 10 9 4 30 30 H 0.97003 * 120.00314 * 179.97438 * 14 13 11 31 31 H 0.97001 * 123.87422 * 179.52165 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2025 1.2075 0.0000 4 6 3.5914 1.1836 0.0056 5 6 4.2767 -0.0106 -0.0001 6 6 3.5802 -1.2061 -0.0058 7 6 2.1960 -1.1963 -0.0057 8 17 1.3218 -2.6962 -0.0135 9 6 4.0414 2.6266 0.0120 10 6 4.8568 2.9282 1.2709 11 6 4.8445 2.9347 -1.2254 12 1 5.0218 2.1631 -1.9601 13 6 5.3538 4.2012 -1.4191 14 7 5.1384 5.1405 -0.5241 15 14 6.3499 4.5829 -2.9525 16 1 5.4412 5.0532 -4.0287 17 1 7.3442 5.6425 -2.6459 18 1 7.0563 3.3564 -3.4019 19 6 2.7490 3.4151 0.0000 20 8 2.6422 4.6233 0.0000 21 7 1.7425 2.5248 -0.0001 22 1 -0.3633 -0.0049 1.0277 23 1 -0.3633 -0.8876 -0.5181 24 1 -0.3633 0.8924 -0.5096 25 1 5.3567 -0.0141 0.0002 26 1 4.1150 -2.1445 -0.0107 27 1 5.7352 2.2834 1.2981 28 1 5.1726 3.9714 1.2580 29 1 4.2439 2.7447 2.1534 30 1 5.4970 6.0315 -0.6601 31 1 0.8040 2.7698 -0.0001 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259771325.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:54 Heat of formation + Delta-G solvation = -26.948006 kcal Electronic energy + Delta-G solvation = -18009.362252 eV Core-core repulsion = 15087.844473 eV Total energy + Delta-G solvation = -2921.517779 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.32942 -39.34286 -37.53707 -36.08874 -35.88168 -33.90504 -32.03450 -29.56919 -27.67728 -27.40123 -25.52575 -23.08427 -21.94940 -20.92808 -18.86196 -18.13102 -17.42263 -16.95064 -16.43823 -16.03070 -15.75252 -14.93727 -14.87895 -14.74107 -14.39736 -13.82522 -13.50332 -13.30864 -13.11021 -13.02225 -12.91067 -12.70160 -12.46062 -12.43363 -12.20829 -11.85096 -11.58611 -11.34963 -11.20036 -10.65247 -10.32818 -9.41448 -8.79658 -8.05281 -6.27819 0.28308 0.33845 1.14627 1.41391 1.43239 1.53024 1.95067 2.34905 2.43370 2.83017 3.16981 3.71136 3.92441 3.98401 4.16561 4.31246 4.53891 4.72110 4.74458 4.76856 4.86903 5.01728 5.19695 5.21279 5.29807 5.33879 5.57967 5.63299 5.76855 5.94085 6.07543 6.12386 6.28094 6.73908 7.39454 7.51169 8.90923 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.028570 B = 0.006530 C = 0.005946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.827005 B = 4286.574369 C = 4707.589744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.109 4.109 3 C 0.139 3.861 4 C -0.113 4.113 5 C -0.068 4.068 6 C -0.124 4.124 7 C -0.021 4.021 8 Cl -0.055 7.055 9 C 0.072 3.928 10 C -0.111 4.111 11 C -0.533 4.533 12 H 0.064 0.936 13 C 0.025 3.975 14 N -0.866 5.866 15 Si 0.954 3.046 16 H -0.286 1.286 17 H -0.281 1.281 18 H -0.259 1.259 19 C 0.520 3.480 20 O -0.519 6.519 21 N -0.667 5.667 22 H 0.084 0.916 23 H 0.085 0.915 24 H 0.065 0.935 25 H 0.142 0.858 26 H 0.162 0.838 27 H 0.055 0.945 28 H 0.068 0.932 29 H 0.023 0.977 30 H 0.259 0.741 31 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.881 -14.153 1.806 15.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.113 4.113 3 C 0.041 3.959 4 C -0.116 4.116 5 C -0.086 4.086 6 C -0.144 4.144 7 C -0.048 4.048 8 Cl -0.026 7.026 9 C 0.068 3.932 10 C -0.169 4.169 11 C -0.570 4.570 12 H 0.082 0.918 13 C -0.179 4.179 14 N -0.500 5.500 15 Si 0.779 3.221 16 H -0.213 1.213 17 H -0.206 1.206 18 H -0.183 1.183 19 C 0.310 3.690 20 O -0.393 6.393 21 N -0.311 5.311 22 H 0.102 0.898 23 H 0.104 0.896 24 H 0.084 0.916 25 H 0.160 0.840 26 H 0.179 0.821 27 H 0.074 0.926 28 H 0.087 0.913 29 H 0.042 0.958 30 H 0.069 0.931 31 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -5.870 -13.309 1.867 14.665 hybrid contribution -0.098 0.864 -0.809 1.188 sum -5.968 -12.445 1.058 13.842 Atomic orbital electron populations 1.20792 0.88668 1.03739 1.03524 1.19034 0.97493 0.88420 1.06388 1.17960 0.93221 0.84507 1.00198 1.20503 0.92996 0.96351 1.01800 1.20365 1.00836 0.89370 0.98067 1.21111 0.91581 0.98939 1.02721 1.20311 0.92241 0.86153 1.06078 1.98330 1.76488 1.30796 1.96947 1.17787 0.91086 0.86892 0.97430 1.21475 0.98402 1.03660 0.93355 1.20835 1.34066 0.96911 1.05224 0.91789 1.25780 0.96760 0.96167 0.99210 1.70139 1.42442 1.02584 1.34841 0.85624 0.78468 0.78400 0.79594 1.21273 1.20592 1.18300 1.22008 0.87755 0.86640 0.72597 1.90650 1.85983 1.13815 1.48803 1.43958 1.09966 1.04942 1.72281 0.89781 0.89622 0.91593 0.84015 0.82081 0.92577 0.91308 0.95815 0.93130 0.75671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.49 9.56 71.24 0.68 -1.80 16 2 C -0.11 -3.21 5.91 -19.64 -0.12 -3.32 16 3 C 0.14 5.10 6.81 38.35 0.26 5.37 16 4 C -0.11 -4.54 4.95 -19.69 -0.10 -4.64 16 5 C -0.07 -2.22 10.03 22.17 0.22 -2.00 16 6 C -0.12 -3.30 9.84 22.34 0.22 -3.08 16 7 C -0.02 -0.55 6.30 22.27 0.14 -0.41 16 8 Cl -0.05 -1.17 27.25 -2.72 -0.07 -1.25 16 9 C 0.07 3.47 0.66 -54.06 -0.04 3.44 16 10 C -0.11 -5.25 8.45 71.98 0.61 -4.64 16 11 C -0.53 -28.29 8.06 25.60 0.21 -28.09 16 12 H 0.06 3.34 7.77 -2.91 -0.02 3.31 16 13 C 0.03 1.38 5.16 84.65 0.44 1.82 16 14 N -0.87 -50.02 9.17 21.45 0.20 -49.82 16 15 Si 0.95 43.14 29.54 68.60 2.03 45.16 16 16 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 17 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 18 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 19 C 0.52 26.23 7.19 87.94 0.63 26.86 16 20 O -0.52 -30.17 16.01 -3.04 -0.05 -30.21 16 21 N -0.67 -26.59 5.80 -303.21 -1.76 -28.34 16 22 H 0.08 1.66 8.14 -2.39 -0.02 1.65 16 23 H 0.09 1.70 6.87 -2.39 -0.02 1.68 16 24 H 0.07 1.43 7.57 -2.38 -0.02 1.41 16 25 H 0.14 4.30 8.06 -2.91 -0.02 4.28 16 26 H 0.16 3.24 8.06 -2.91 -0.02 3.22 16 27 H 0.06 2.41 8.14 -2.38 -0.02 2.39 16 28 H 0.07 3.70 5.89 -2.39 -0.01 3.69 16 29 H 0.02 1.01 8.14 -2.38 -0.02 0.99 16 30 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 31 H 0.40 13.58 8.47 -92.71 -0.79 12.79 16 Total: -1.00 -64.21 277.46 3.89 -60.32 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: 0.39 Total: 14.65 kcal Atomic # 6 Polarization: -13.66 SS G_CDS: 3.16 Total: -10.50 kcal Atomic # 7 Polarization: -76.61 SS G_CDS: -1.56 Total: -78.17 kcal Atomic # 8 Polarization: -30.17 SS G_CDS: -0.05 Total: -30.21 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.16 kcal Atomic # 17 Polarization: -1.17 SS G_CDS: -0.07 Total: -1.25 kcal Total: -64.21 3.89 -60.32 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259771325.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.372 kcal (2) G-P(sol) polarization free energy of solvation -64.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds