Wall clock time and date at job start Mon Mar 30 2020 06:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39353 * 119.93687 * 2 1 4 4 C 1.38906 * 118.95572 * 179.97438 * 3 2 1 5 5 C 1.37693 * 120.82856 * 0.02562 * 4 3 2 6 6 C 1.38373 * 119.93383 * 359.97438 * 5 4 3 7 7 C 1.38050 * 119.93767 * 179.97438 * 2 1 3 8 8 Cl 1.73600 * 119.82858 * 0.04084 * 7 2 1 9 9 C 1.51138 * 106.34149 * 180.02562 * 4 3 2 10 10 C 1.52995 * 110.51155 * 241.22423 * 9 4 3 11 11 C 1.50694 * 110.50931 * 118.64980 * 9 4 3 12 12 H 1.08000 * 120.00563 * 1.90355 * 11 9 4 13 13 C 1.37885 * 119.99902 * 181.90518 * 11 9 4 14 14 N 1.31516 * 119.99913 * 359.97438 * 13 11 9 15 15 Si 1.86798 * 119.99766 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47353 * 269.99586 * 15 13 11 17 17 H 1.48501 * 109.47293 * 30.00037 * 15 13 11 18 18 H 1.48504 * 109.46680 * 149.99835 * 15 13 11 19 19 C 1.51398 * 104.18541 * 359.93736 * 9 4 3 20 20 O 1.21292 * 126.43786 * 180.02562 * 19 9 4 21 21 N 1.34671 * 106.95677 * 0.11072 * 19 9 4 22 22 H 1.08997 * 109.47206 * 270.02061 * 1 2 3 23 23 H 1.09005 * 109.47314 * 30.02202 * 1 2 3 24 24 H 1.08994 * 109.47311 * 150.01817 * 1 2 3 25 25 H 1.08004 * 120.03319 * 179.97438 * 5 4 3 26 26 H 1.07992 * 120.09333 * 180.02562 * 6 5 4 27 27 H 1.08998 * 109.47228 * 298.09338 * 10 9 4 28 28 H 1.09004 * 109.47729 * 58.09514 * 10 9 4 29 29 H 1.09003 * 109.47445 * 178.09881 * 10 9 4 30 30 H 0.97001 * 119.99646 * 179.97438 * 14 13 11 31 31 H 0.96997 * 123.83720 * 179.97438 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2025 1.2076 0.0000 4 6 3.5913 1.1838 0.0005 5 6 4.2766 -0.0105 0.0005 6 6 3.5802 -1.2062 0.0005 7 6 2.1960 -1.1963 0.0005 8 17 1.3218 -2.6962 0.0001 9 6 4.0413 2.6266 0.0010 10 6 4.8600 2.9333 -1.2546 11 6 4.8441 2.9289 1.2400 12 1 5.0469 2.1465 1.9564 13 6 5.3196 4.2044 1.4593 14 7 5.0731 5.1571 0.5868 15 14 6.3141 4.5792 2.9955 16 1 5.3993 5.0004 4.0868 17 1 7.0565 3.3630 3.4135 18 1 7.2770 5.6724 2.7072 19 6 2.7506 3.4179 -0.0009 20 8 2.6463 4.6263 -0.0016 21 7 1.7425 2.5249 0.0002 22 1 -0.3633 0.0004 1.0276 23 1 -0.3634 0.8898 -0.5142 24 1 -0.3633 -0.8901 -0.5135 25 1 5.3566 -0.0140 0.0006 26 1 4.1150 -2.1443 0.0010 27 1 5.7558 2.3125 -1.2649 28 1 4.2607 2.7211 -2.1400 29 1 5.1468 3.9849 -1.2535 30 1 5.4073 6.0545 0.7412 31 1 0.8039 2.7699 -0.0002 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259771329.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:55 Heat of formation + Delta-G solvation = -26.534789 kcal Electronic energy + Delta-G solvation = -18012.028080 eV Core-core repulsion = 15090.528220 eV Total energy + Delta-G solvation = -2921.499860 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.30332 -39.33004 -37.53291 -36.07582 -35.86016 -33.90214 -32.04116 -29.56958 -27.67303 -27.38310 -25.52167 -23.07430 -21.94829 -20.92779 -18.85048 -18.12339 -17.41023 -16.94590 -16.42978 -16.01089 -15.74797 -14.93731 -14.89428 -14.71309 -14.38852 -13.81204 -13.51786 -13.30438 -13.08197 -13.05468 -12.91767 -12.67929 -12.48863 -12.42554 -12.20187 -11.84449 -11.60481 -11.33507 -11.19138 -10.63841 -10.32950 -9.41171 -8.78689 -8.04991 -6.27100 0.28806 0.34298 1.14885 1.41470 1.43256 1.53068 1.95333 2.35175 2.43386 2.83619 3.17290 3.71768 3.92837 3.98645 4.16974 4.31669 4.54231 4.72191 4.74734 4.76629 4.86508 5.01246 5.19712 5.21495 5.29863 5.34118 5.58126 5.63560 5.77236 5.91487 6.07692 6.12771 6.28066 6.74333 7.39589 7.52268 8.91275 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.028530 B = 0.006535 C = 0.005954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.202286 B = 4283.473271 C = 4701.789507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.110 4.110 3 C 0.140 3.860 4 C -0.114 4.114 5 C -0.068 4.068 6 C -0.125 4.125 7 C -0.020 4.020 8 Cl -0.055 7.055 9 C 0.072 3.928 10 C -0.109 4.109 11 C -0.533 4.533 12 H 0.065 0.935 13 C 0.024 3.976 14 N -0.864 5.864 15 Si 0.953 3.047 16 H -0.286 1.286 17 H -0.259 1.259 18 H -0.281 1.281 19 C 0.520 3.480 20 O -0.515 6.515 21 N -0.669 5.669 22 H 0.079 0.921 23 H 0.067 0.933 24 H 0.086 0.914 25 H 0.142 0.858 26 H 0.162 0.838 27 H 0.056 0.944 28 H 0.024 0.976 29 H 0.063 0.937 30 H 0.259 0.741 31 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.801 -14.142 -1.869 15.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.114 4.114 3 C 0.042 3.958 4 C -0.117 4.117 5 C -0.086 4.086 6 C -0.144 4.144 7 C -0.048 4.048 8 Cl -0.026 7.026 9 C 0.068 3.932 10 C -0.168 4.168 11 C -0.570 4.570 12 H 0.083 0.917 13 C -0.181 4.181 14 N -0.498 5.498 15 Si 0.779 3.221 16 H -0.213 1.213 17 H -0.183 1.183 18 H -0.207 1.207 19 C 0.309 3.691 20 O -0.387 6.387 21 N -0.313 5.313 22 H 0.098 0.902 23 H 0.086 0.914 24 H 0.105 0.895 25 H 0.160 0.840 26 H 0.179 0.821 27 H 0.075 0.925 28 H 0.043 0.957 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -5.793 -13.291 -1.931 14.626 hybrid contribution -0.102 0.871 0.810 1.194 sum -5.895 -12.420 -1.121 13.794 Atomic orbital electron populations 1.20786 0.88693 1.03873 1.03361 1.19031 0.97480 0.88432 1.06466 1.17954 0.93225 0.84502 1.00093 1.20489 0.93001 0.96328 1.01853 1.20367 1.00834 0.89365 0.98059 1.21108 0.91574 0.98937 1.02784 1.20312 0.92245 0.86144 1.06064 1.98329 1.76499 1.30803 1.96948 1.17776 0.91088 0.86910 0.97390 1.21469 0.98495 1.03227 0.93565 1.20827 1.34382 0.95870 1.05935 0.91706 1.25799 0.96749 0.96218 0.99286 1.70191 1.42537 1.01681 1.35417 0.85630 0.78530 0.78350 0.79612 1.21251 1.18283 1.20669 1.22080 0.87686 0.86650 0.72644 1.90661 1.85919 1.13686 1.48470 1.44042 1.09957 1.04917 1.72431 0.90206 0.91370 0.89475 0.84005 0.82092 0.92522 0.95692 0.91805 0.93189 0.75722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.49 9.56 71.24 0.68 -1.81 16 2 C -0.11 -3.23 5.91 -19.64 -0.12 -3.35 16 3 C 0.14 5.15 6.81 38.34 0.26 5.41 16 4 C -0.11 -4.55 4.95 -19.69 -0.10 -4.65 16 5 C -0.07 -2.21 10.03 22.17 0.22 -1.99 16 6 C -0.12 -3.32 9.84 22.35 0.22 -3.10 16 7 C -0.02 -0.55 6.30 22.27 0.14 -0.41 16 8 Cl -0.05 -1.18 27.25 -2.72 -0.07 -1.25 16 9 C 0.07 3.49 0.66 -54.06 -0.04 3.45 16 10 C -0.11 -5.17 8.41 71.98 0.61 -4.56 16 11 C -0.53 -28.24 8.08 25.60 0.21 -28.04 16 12 H 0.06 3.37 7.77 -2.91 -0.02 3.35 16 13 C 0.02 1.32 5.17 84.66 0.44 1.76 16 14 N -0.86 -50.04 9.12 21.45 0.20 -49.84 16 15 Si 0.95 43.13 29.54 68.60 2.03 45.16 16 16 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 17 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 18 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 19 C 0.52 26.19 7.20 87.90 0.63 26.82 16 20 O -0.51 -29.88 15.83 -3.07 -0.05 -29.93 16 21 N -0.67 -26.67 5.81 -302.83 -1.76 -28.43 16 22 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 23 H 0.07 1.45 7.59 -2.38 -0.02 1.43 16 24 H 0.09 1.70 6.87 -2.39 -0.02 1.68 16 25 H 0.14 4.29 8.06 -2.91 -0.02 4.27 16 26 H 0.16 3.24 8.06 -2.91 -0.02 3.21 16 27 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 28 H 0.02 1.06 8.14 -2.38 -0.02 1.04 16 29 H 0.06 3.42 6.09 -2.39 -0.01 3.41 16 30 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 31 H 0.40 13.58 8.48 -92.71 -0.79 12.80 16 Total: -1.00 -64.16 277.44 3.88 -60.28 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: 0.39 Total: 14.48 kcal Atomic # 6 Polarization: -13.62 SS G_CDS: 3.16 Total: -10.46 kcal Atomic # 7 Polarization: -76.71 SS G_CDS: -1.57 Total: -78.28 kcal Atomic # 8 Polarization: -29.88 SS G_CDS: -0.05 Total: -29.93 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Atomic # 17 Polarization: -1.18 SS G_CDS: -0.07 Total: -1.25 kcal Total: -64.16 3.88 -60.28 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259771329.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.743 kcal (2) G-P(sol) polarization free energy of solvation -64.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds