Wall clock time and date at job start Mon Mar 30 2020 06:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36345 * 125.63467 * 2 1 4 4 C 1.34855 * 108.21747 * 179.97438 * 3 2 1 5 5 C 1.40894 * 107.41549 * 0.02562 * 4 3 2 6 6 C 1.34849 * 107.42132 * 359.97438 * 5 4 3 7 7 C 1.50692 * 125.89454 * 180.02562 * 6 5 4 8 8 C 1.50696 * 109.47274 * 82.60933 * 7 6 5 9 9 C 1.35223 * 127.23272 * 94.52009 * 8 7 6 10 10 Cl 1.73593 * 126.32797 * 359.97438 * 9 8 7 11 11 N 1.35958 * 107.34347 * 179.85388 * 9 8 7 12 12 H 0.96999 * 124.85894 * 180.14705 * 11 9 8 13 13 N 1.28464 * 110.27518 * 0.43122 * 11 9 8 14 14 C 1.32774 * 109.96600 * 359.73351 * 13 11 9 15 15 C 1.41418 * 126.56266 * 180.02562 * 14 13 11 16 16 H 1.07988 * 120.00240 * 173.63205 * 15 14 13 17 17 C 1.39854 * 119.99671 * 353.63075 * 15 14 13 18 18 N 1.30893 * 119.99776 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99877 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47290 * 59.99533 * 19 17 15 21 21 H 1.48497 * 109.47211 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.46939 * 299.99726 * 19 17 15 23 23 H 1.08994 * 109.47956 * 84.63911 * 1 2 3 24 24 H 1.09008 * 109.47194 * 204.64426 * 1 2 3 25 25 H 1.09007 * 109.47197 * 324.63531 * 1 2 3 26 26 H 1.08000 * 125.89201 * 359.97438 * 3 2 1 27 27 H 1.07997 * 126.28960 * 179.74341 * 4 3 2 28 28 H 1.08003 * 126.28946 * 179.97438 * 5 4 3 29 29 H 1.08995 * 109.47650 * 202.61051 * 7 6 5 30 30 H 1.09004 * 109.47157 * 322.61014 * 7 6 5 31 31 H 0.97004 * 119.99671 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2593 1.1081 0.0000 4 6 3.5460 0.7045 0.0006 5 6 3.5460 -0.7045 0.0003 6 6 2.2594 -1.1082 0.0002 7 6 1.7818 -2.5374 0.0005 8 6 1.7957 -3.0714 1.4096 9 6 0.7649 -3.0988 2.2844 10 17 -0.8452 -2.5180 1.9950 11 7 1.2219 -3.6676 3.4316 12 1 0.6885 -3.8143 4.2284 13 7 2.4628 -3.9776 3.3111 14 6 2.8973 -3.6469 2.1009 15 6 4.2051 -3.8320 1.5957 16 1 4.4189 -3.6180 0.5590 17 6 5.2217 -4.2921 2.4387 18 7 4.9627 -4.5510 3.6954 19 14 6.9495 -4.5359 1.7716 20 1 7.4681 -3.2433 1.2564 21 1 7.8350 -5.0263 2.8581 22 1 6.9188 -5.5313 0.6700 23 1 -0.3635 0.0960 -1.0231 24 1 -0.3634 -0.9341 0.4285 25 1 -0.3634 0.8381 0.5948 26 1 1.9171 2.1325 -0.0004 27 1 4.4165 1.3437 -0.0032 28 1 4.4165 -1.3437 0.0003 29 1 0.7670 -2.5816 -0.3948 30 1 2.4412 -3.1409 -0.6233 31 1 5.6680 -4.8698 4.2802 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259774364.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:55 Heat of formation + Delta-G solvation = 109.305693 kcal Electronic energy + Delta-G solvation = -17797.628143 eV Core-core repulsion = 14914.311519 eV Total energy + Delta-G solvation = -2883.316624 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.068 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.79068 -40.27484 -36.14514 -33.49370 -32.55107 -32.27285 -29.48047 -28.10802 -25.86844 -25.73424 -24.77878 -20.56844 -19.81905 -19.35236 -18.31381 -17.25863 -16.40292 -16.11966 -14.81054 -14.66808 -14.10067 -13.95812 -13.31735 -12.81736 -12.63720 -12.63270 -12.18940 -11.89850 -11.57988 -11.49703 -11.27858 -11.06802 -11.01914 -10.74613 -10.59858 -10.41513 -9.93311 -9.23847 -8.56166 -7.93747 -7.68743 -7.47394 -7.20912 -6.32909 -4.20479 2.48660 2.82945 3.16998 3.19623 3.25391 3.28716 3.55916 3.77665 4.18811 4.29767 4.56534 5.15739 5.43112 5.47484 5.60028 5.71833 5.83484 5.86450 6.22271 6.29373 6.42686 6.48980 6.82884 6.97906 7.02866 7.15208 7.39427 7.55663 7.76046 7.94202 8.02760 8.24142 8.64903 8.89168 9.19859 10.06778 10.65106 Molecular weight = 265.07amu Principal moments of inertia in cm(-1) A = 0.017530 B = 0.008737 C = 0.006234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.863142 B = 3204.108121 C = 4490.305123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.448 5.448 3 C -0.039 4.039 4 C -0.201 4.201 5 C -0.186 4.186 6 C 0.044 3.956 7 C 0.043 3.957 8 C -0.224 4.224 9 C 0.041 3.959 10 Cl -0.066 7.066 11 N -0.426 5.426 12 H 0.421 0.579 13 N -0.313 5.313 14 C 0.215 3.785 15 C -0.438 4.438 16 H 0.083 0.917 17 C 0.074 3.926 18 N -0.781 5.781 19 Si 0.903 3.097 20 H -0.266 1.266 21 H -0.283 1.283 22 H -0.268 1.268 23 H 0.062 0.938 24 H 0.093 0.907 25 H 0.071 0.929 26 H 0.150 0.850 27 H 0.126 0.874 28 H 0.139 0.861 29 H 0.055 0.945 30 H 0.088 0.912 31 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.777 6.125 -5.321 11.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.125 5.125 3 C -0.168 4.168 4 C -0.227 4.227 5 C -0.210 4.210 6 C -0.067 4.067 7 C 0.004 3.996 8 C -0.240 4.240 9 C -0.113 4.113 10 Cl -0.039 7.039 11 N -0.134 5.134 12 H 0.262 0.738 13 N -0.147 5.147 14 C 0.068 3.932 15 C -0.476 4.476 16 H 0.101 0.899 17 C -0.145 4.145 18 N -0.409 5.409 19 Si 0.728 3.272 20 H -0.191 1.191 21 H -0.209 1.209 22 H -0.193 1.193 23 H 0.080 0.920 24 H 0.112 0.888 25 H 0.090 0.910 26 H 0.167 0.833 27 H 0.144 0.856 28 H 0.156 0.844 29 H 0.074 0.926 30 H 0.106 0.894 31 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.897 5.619 -4.105 10.526 hybrid contribution -0.004 0.437 -0.370 0.573 sum -7.901 6.056 -4.476 10.915 Atomic orbital electron populations 1.22160 0.78710 1.04994 1.02078 1.43800 1.05376 1.05885 1.57422 1.21527 0.90782 0.90809 1.13660 1.20806 0.95393 0.95485 1.10989 1.20756 0.95847 0.94444 1.09972 1.20463 0.90290 0.88291 1.07663 1.18084 0.99793 0.88405 0.93320 1.19597 0.93741 1.13886 0.96772 1.21792 0.85672 1.10781 0.93062 1.98244 1.23033 1.87472 1.95103 1.43709 1.09809 1.48708 1.11194 0.73839 1.74894 0.89513 1.28867 1.21442 1.18953 0.92983 0.93769 0.87544 1.18445 0.90350 1.41823 0.97028 0.89924 1.25746 1.00228 0.93970 0.94525 1.69932 1.33505 1.32942 1.04531 0.86462 0.82231 0.79426 0.79039 1.19125 1.20857 1.19321 0.91966 0.88845 0.91027 0.83273 0.85583 0.84355 0.92619 0.89375 0.91964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.84 10.81 59.84 0.65 1.49 16 2 N -0.45 -7.66 3.15 -119.90 -0.38 -8.04 16 3 C -0.04 -0.64 11.44 -16.75 -0.19 -0.83 16 4 C -0.20 -3.63 10.86 -39.78 -0.43 -4.06 16 5 C -0.19 -3.79 10.76 -39.78 -0.43 -4.21 16 6 C 0.04 0.86 6.12 -81.79 -0.50 0.36 16 7 C 0.04 0.84 5.59 -29.04 -0.16 0.68 16 8 C -0.22 -5.11 5.50 -104.17 -0.57 -5.68 16 9 C 0.04 0.85 7.86 -16.80 -0.13 0.72 16 10 Cl -0.07 -1.06 26.15 -51.86 -1.36 -2.42 16 11 N -0.43 -9.47 6.87 32.88 0.23 -9.24 16 12 H 0.42 7.85 8.96 -190.44 -1.71 6.14 16 13 N -0.31 -8.38 10.52 32.34 0.34 -8.04 16 14 C 0.21 5.72 6.77 -84.72 -0.57 5.15 16 15 C -0.44 -11.69 9.26 -37.77 -0.35 -12.03 16 16 H 0.08 2.07 7.45 -52.49 -0.39 1.68 16 17 C 0.07 1.95 5.49 -17.35 -0.10 1.85 16 18 N -0.78 -21.70 11.99 55.54 0.67 -21.04 16 19 Si 0.90 19.63 29.56 -169.99 -5.02 14.61 16 20 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 21 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 22 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16 23 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.09 1.32 4.07 -51.92 -0.21 1.11 16 25 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 26 H 0.15 1.93 8.06 -52.49 -0.42 1.51 16 27 H 0.13 2.00 8.06 -52.49 -0.42 1.57 16 28 H 0.14 2.90 7.84 -52.48 -0.41 2.49 16 29 H 0.06 0.96 7.01 -51.93 -0.36 0.60 16 30 H 0.09 1.70 7.96 -51.93 -0.41 1.28 16 31 H 0.27 6.97 8.30 -40.82 -0.34 6.63 16 LS Contribution 284.00 15.07 4.28 4.28 Total: -1.00 -30.72 284.00 -8.36 -39.08 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -4.32 Total: 7.39 kcal Atomic # 6 Polarization: -13.78 SS G_CDS: -2.79 Total: -16.58 kcal Atomic # 7 Polarization: -47.22 SS G_CDS: 0.85 Total: -46.36 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.02 Total: 14.61 kcal Atomic # 17 Polarization: -1.06 SS G_CDS: -1.36 Total: -2.42 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -30.72 -8.36 -39.08 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259774364.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.385 kcal (2) G-P(sol) polarization free energy of solvation -30.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds