Wall clock time and date at job start Mon Mar 30 2020 06:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36345 * 125.63467 * 2 1 4 4 C 1.34855 * 108.21747 * 179.97438 * 3 2 1 5 5 C 1.40894 * 107.41549 * 0.02562 * 4 3 2 6 6 C 1.34849 * 107.42132 * 359.97438 * 5 4 3 7 7 C 1.50692 * 125.89454 * 180.02562 * 6 5 4 8 8 C 1.50696 * 109.47274 * 82.60933 * 7 6 5 9 9 C 1.35223 * 127.23272 * 94.52009 * 8 7 6 10 10 Cl 1.73593 * 126.32797 * 359.97438 * 9 8 7 11 11 N 1.35958 * 107.34347 * 179.85388 * 9 8 7 12 12 H 0.96999 * 124.85894 * 180.14705 * 11 9 8 13 13 N 1.28464 * 110.27518 * 0.43122 * 11 9 8 14 14 C 1.32774 * 109.96600 * 359.73351 * 13 11 9 15 15 C 1.41418 * 126.56266 * 180.02562 * 14 13 11 16 16 H 1.07988 * 120.00240 * 173.63205 * 15 14 13 17 17 C 1.39854 * 119.99671 * 353.63075 * 15 14 13 18 18 N 1.30893 * 119.99776 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99877 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47290 * 59.99533 * 19 17 15 21 21 H 1.48497 * 109.47211 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.46939 * 299.99726 * 19 17 15 23 23 H 1.08994 * 109.47956 * 84.63911 * 1 2 3 24 24 H 1.09008 * 109.47194 * 204.64426 * 1 2 3 25 25 H 1.09007 * 109.47197 * 324.63531 * 1 2 3 26 26 H 1.08000 * 125.89201 * 359.97438 * 3 2 1 27 27 H 1.07997 * 126.28960 * 179.74341 * 4 3 2 28 28 H 1.08003 * 126.28946 * 179.97438 * 5 4 3 29 29 H 1.08995 * 109.47650 * 202.61051 * 7 6 5 30 30 H 1.09004 * 109.47157 * 322.61014 * 7 6 5 31 31 H 0.97004 * 119.99671 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2593 1.1081 0.0000 4 6 3.5460 0.7045 0.0006 5 6 3.5460 -0.7045 0.0003 6 6 2.2594 -1.1082 0.0002 7 6 1.7818 -2.5374 0.0005 8 6 1.7957 -3.0714 1.4096 9 6 0.7649 -3.0988 2.2844 10 17 -0.8452 -2.5180 1.9950 11 7 1.2219 -3.6676 3.4316 12 1 0.6885 -3.8143 4.2284 13 7 2.4628 -3.9776 3.3111 14 6 2.8973 -3.6469 2.1009 15 6 4.2051 -3.8320 1.5957 16 1 4.4189 -3.6180 0.5590 17 6 5.2217 -4.2921 2.4387 18 7 4.9627 -4.5510 3.6954 19 14 6.9495 -4.5359 1.7716 20 1 7.4681 -3.2433 1.2564 21 1 7.8350 -5.0263 2.8581 22 1 6.9188 -5.5313 0.6700 23 1 -0.3635 0.0960 -1.0231 24 1 -0.3634 -0.9341 0.4285 25 1 -0.3634 0.8381 0.5948 26 1 1.9171 2.1325 -0.0004 27 1 4.4165 1.3437 -0.0032 28 1 4.4165 -1.3437 0.0003 29 1 0.7670 -2.5816 -0.3948 30 1 2.4412 -3.1409 -0.6233 31 1 5.6680 -4.8698 4.2802 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259774364.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:54 Heat of formation + Delta-G solvation = 91.092001 kcal Electronic energy + Delta-G solvation = -17798.417947 eV Core-core repulsion = 14914.311519 eV Total energy + Delta-G solvation = -2884.106429 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.068 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.47873 -41.74900 -37.65258 -35.39574 -34.21628 -33.52803 -31.32369 -29.72897 -27.68746 -27.03768 -26.31744 -22.41716 -21.29871 -20.93459 -19.78728 -18.95475 -18.29792 -17.50782 -16.52126 -16.07705 -15.71836 -15.51139 -14.93861 -14.44042 -14.13642 -14.01578 -13.45303 -13.42922 -13.04573 -12.89631 -12.82085 -12.77018 -12.61902 -12.37368 -12.20153 -11.96846 -11.73656 -11.13802 -10.41959 -9.56451 -9.28234 -9.21264 -8.66093 -8.28443 -6.21377 0.86147 1.32320 1.45292 1.46970 1.57291 1.62262 2.26869 2.32588 2.36396 2.40126 2.94157 3.61844 4.10402 4.23806 4.30639 4.48328 4.49857 4.60108 4.71443 4.89150 4.93472 4.98149 5.09052 5.37423 5.45216 5.60530 5.69395 5.71643 6.32066 6.37734 6.53292 6.75257 6.82006 6.94635 7.22866 8.18882 8.71247 Molecular weight = 265.07amu Principal moments of inertia in cm(-1) A = 0.017530 B = 0.008737 C = 0.006234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.863142 B = 3204.108121 C = 4490.305123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.448 5.448 3 C -0.022 4.022 4 C -0.226 4.226 5 C -0.217 4.217 6 C 0.027 3.973 7 C 0.050 3.950 8 C -0.236 4.236 9 C 0.050 3.950 10 Cl -0.015 7.015 11 N -0.426 5.426 12 H 0.434 0.566 13 N -0.352 5.352 14 C 0.181 3.819 15 C -0.462 4.462 16 H 0.085 0.915 17 C 0.026 3.974 18 N -0.822 5.822 19 Si 0.973 3.027 20 H -0.263 1.263 21 H -0.278 1.278 22 H -0.259 1.259 23 H 0.089 0.911 24 H 0.083 0.917 25 H 0.095 0.905 26 H 0.191 0.809 27 H 0.140 0.860 28 H 0.115 0.885 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.341 7.704 -6.319 13.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.124 5.124 3 C -0.152 4.152 4 C -0.251 4.251 5 C -0.242 4.242 6 C -0.085 4.085 7 C 0.011 3.989 8 C -0.251 4.251 9 C -0.103 4.103 10 Cl 0.013 6.987 11 N -0.136 5.136 12 H 0.277 0.723 13 N -0.186 5.186 14 C 0.033 3.967 15 C -0.500 4.500 16 H 0.103 0.897 17 C -0.188 4.188 18 N -0.452 5.452 19 Si 0.796 3.204 20 H -0.187 1.187 21 H -0.203 1.203 22 H -0.184 1.184 23 H 0.107 0.893 24 H 0.101 0.899 25 H 0.114 0.886 26 H 0.208 0.792 27 H 0.158 0.842 28 H 0.133 0.867 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.507 7.202 -5.109 12.975 hybrid contribution 0.264 0.037 -0.073 0.276 sum -9.243 7.239 -5.182 12.833 Atomic orbital electron populations 1.22435 0.76341 1.05485 1.04314 1.44037 1.06858 1.05177 1.56330 1.22133 0.90048 0.92236 1.10734 1.21066 0.97169 0.94567 1.12315 1.20817 0.95875 0.95792 1.11676 1.20340 0.90537 0.88875 1.08755 1.18031 1.00944 0.88504 0.91456 1.19894 0.93061 1.13788 0.98333 1.21881 0.87787 1.08839 0.91834 1.98257 1.18888 1.86728 1.94844 1.43649 1.09060 1.48637 1.12280 0.72295 1.74764 0.91598 1.30045 1.22233 1.19364 0.94209 0.94796 0.88361 1.18759 0.91313 1.42541 0.97416 0.89695 1.26606 1.04221 0.93349 0.94627 1.70057 1.34778 1.34499 1.05838 0.85382 0.77059 0.79481 0.78509 1.18741 1.20342 1.18358 0.89261 0.89856 0.88609 0.79174 0.84196 0.86695 0.90252 0.90227 0.91887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.25 10.81 127.77 1.38 2.63 16 2 N -0.45 -14.08 3.15 -533.25 -1.68 -15.76 16 3 C -0.02 -0.65 11.44 83.21 0.95 0.30 16 4 C -0.23 -7.92 10.86 22.14 0.24 -7.68 16 5 C -0.22 -8.96 10.76 22.14 0.24 -8.72 16 6 C 0.03 1.04 6.12 41.08 0.25 1.29 16 7 C 0.05 1.92 5.59 29.10 0.16 2.08 16 8 C -0.24 -10.78 5.50 -19.57 -0.11 -10.88 16 9 C 0.05 2.06 7.86 83.36 0.65 2.72 16 10 Cl -0.01 -0.44 26.15 -2.72 -0.07 -0.51 16 11 N -0.43 -18.96 6.87 -49.88 -0.34 -19.30 16 12 H 0.43 16.06 8.96 -219.99 -1.97 14.09 16 13 N -0.35 -19.34 10.52 -51.61 -0.54 -19.88 16 14 C 0.18 9.92 6.77 40.77 0.28 10.20 16 15 C -0.46 -25.58 9.26 23.44 0.22 -25.37 16 16 H 0.08 4.46 7.45 -2.92 -0.02 4.44 16 17 C 0.03 1.43 5.49 85.22 0.47 1.90 16 18 N -0.82 -47.29 11.99 21.81 0.26 -47.03 16 19 Si 0.97 41.44 29.56 68.60 2.03 43.46 16 20 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 21 H -0.28 -11.49 7.11 99.48 0.71 -10.79 16 22 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 23 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 24 H 0.08 2.05 4.07 -2.38 -0.01 2.04 16 25 H 0.10 1.73 8.14 -2.38 -0.02 1.71 16 26 H 0.19 3.98 8.06 -2.91 -0.02 3.96 16 27 H 0.14 4.30 8.06 -2.91 -0.02 4.28 16 28 H 0.11 5.13 7.84 -2.91 -0.02 5.10 16 29 H 0.08 2.60 7.01 -2.39 -0.02 2.58 16 30 H 0.08 3.14 7.96 -2.38 -0.02 3.12 16 31 H 0.27 14.49 8.30 -92.71 -0.77 13.72 16 Total: -1.00 -68.35 284.00 3.59 -64.76 By element: Atomic # 1 Polarization: 26.59 SS G_CDS: -0.80 Total: 25.79 kcal Atomic # 6 Polarization: -36.27 SS G_CDS: 4.73 Total: -31.53 kcal Atomic # 7 Polarization: -99.67 SS G_CDS: -2.30 Total: -101.98 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.46 kcal Atomic # 17 Polarization: -0.44 SS G_CDS: -0.07 Total: -0.51 kcal Total: -68.35 3.59 -64.76 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259774364.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.853 kcal (2) G-P(sol) polarization free energy of solvation -68.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds