Wall clock time and date at job start Mon Mar 30 2020 06:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.28761 * 124.77102 * 2 1 4 4 C 1.32927 * 115.85539 * 180.02562 * 3 2 1 5 5 C 1.47452 * 123.07097 * 180.02562 * 4 3 2 6 6 N 1.32316 * 126.69700 * 0.02870 * 5 4 3 7 7 C 1.34184 * 105.52608 * 179.97438 * 6 5 4 8 8 C 1.50699 * 126.17150 * 180.02562 * 7 6 5 9 9 C 1.52997 * 109.47040 * 90.00083 * 8 7 6 10 10 C 1.50705 * 109.47038 * 179.97438 * 9 8 7 11 11 H 1.07991 * 119.99954 * 0.02562 * 10 9 8 12 12 C 1.37878 * 119.99644 * 180.02562 * 10 9 8 13 13 N 1.31514 * 120.00470 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99601 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47598 * 89.99644 * 14 12 10 16 16 H 1.48505 * 109.46938 * 209.99823 * 14 12 10 17 17 H 1.48501 * 109.47276 * 329.99771 * 14 12 10 18 18 N 1.30044 * 107.65082 * 359.97438 * 7 6 5 19 19 O 1.21279 * 110.53303 * 359.97438 * 18 7 6 20 20 C 1.35083 * 113.86144 * 0.27219 * 4 3 2 21 21 S 1.70799 * 124.77659 * 180.02562 * 2 1 3 22 22 H 1.08995 * 109.47278 * 90.00049 * 1 2 3 23 23 H 1.09002 * 109.47213 * 209.99686 * 1 2 3 24 24 H 1.08997 * 109.47504 * 329.99268 * 1 2 3 25 25 H 1.09003 * 109.47174 * 210.00310 * 8 7 6 26 26 H 1.08998 * 109.47397 * 330.00234 * 8 7 6 27 27 H 1.08994 * 109.47591 * 300.00085 * 9 8 7 28 28 H 1.09003 * 109.46928 * 60.00346 * 9 8 7 29 29 H 0.96999 * 120.00229 * 180.02562 * 13 12 10 30 30 H 1.08006 * 125.60965 * 179.70749 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2413 1.0577 0.0000 4 6 3.5545 0.8517 -0.0005 5 6 4.5409 1.9477 -0.0001 6 7 4.2813 3.2451 0.0014 7 6 5.4785 3.8510 0.0018 8 6 5.7228 5.3381 0.0040 9 6 5.8061 5.8391 1.4472 10 6 6.0511 7.3261 1.4494 11 1 6.1381 7.8604 0.5149 12 6 6.1640 8.0044 2.6444 13 7 6.0585 7.3537 3.7825 14 14 6.4669 9.8477 2.6471 15 1 5.1656 10.5633 2.6494 16 1 7.2390 10.2207 3.8595 17 1 7.2368 10.2246 1.4345 18 7 6.3899 2.9234 0.0012 19 8 5.8779 1.8240 0.0009 20 6 3.9029 -0.4534 -0.0069 21 16 2.4812 -1.4029 -0.0006 22 1 -0.3633 0.0000 -1.0276 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3634 0.8899 0.5139 25 1 6.6597 5.5531 -0.5100 26 1 4.9033 5.8417 -0.5087 27 1 4.8693 5.6241 1.9612 28 1 6.6257 5.3355 1.9599 29 1 6.1375 7.8310 4.6232 30 1 4.9135 -0.8346 -0.0129 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259776541.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:58 Heat of formation + Delta-G solvation = 102.530322 kcal Electronic energy + Delta-G solvation = -16541.637580 eV Core-core repulsion = 13660.070860 eV Total energy + Delta-G solvation = -2881.566720 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.063 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -45.15845 -40.19003 -35.92516 -33.93996 -33.17809 -31.73779 -30.39129 -28.65992 -25.88639 -25.49129 -23.40159 -22.14564 -20.86351 -19.86644 -18.56922 -17.80582 -17.18146 -16.29845 -15.75526 -15.33017 -14.81411 -14.48143 -13.75932 -13.42197 -13.10259 -13.06117 -12.56019 -12.42885 -12.13772 -12.05253 -11.67652 -11.08814 -10.95531 -10.71193 -10.66536 -10.21173 -10.03103 -9.97042 -9.94480 -9.41405 -9.18775 -8.71870 -8.36953 -6.01335 -4.05214 0.13497 0.90576 1.25363 1.28438 2.40849 2.60731 2.98862 3.33390 3.38990 3.42597 4.00803 4.03462 4.42952 4.56053 4.75295 4.87475 5.05243 5.13861 5.20419 5.34749 5.51244 5.68615 6.04184 6.23461 6.38513 6.47398 6.83803 7.29961 7.61319 7.70773 7.95714 8.33303 8.53959 9.00323 9.58809 11.10215 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.035700 B = 0.003604 C = 0.003420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.131265 B = 7767.809904 C = 8184.451378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.032 3.968 3 N -0.425 5.425 4 C 0.145 3.855 5 C 0.220 3.780 6 N -0.435 5.435 7 C 0.198 3.802 8 C -0.030 4.030 9 C 0.030 3.970 10 C -0.523 4.523 11 H 0.060 0.940 12 C 0.058 3.942 13 N -0.893 5.893 14 Si 0.897 3.103 15 H -0.279 1.279 16 H -0.286 1.286 17 H -0.273 1.273 18 N -0.385 5.385 19 O 0.081 5.919 20 C -0.258 4.258 21 S 0.215 5.785 22 H 0.089 0.911 23 H 0.083 0.917 24 H 0.094 0.906 25 H 0.081 0.919 26 H 0.086 0.914 27 H 0.023 0.977 28 H 0.019 0.981 29 H 0.262 0.738 30 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.655 -21.211 -8.516 24.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.247 4.247 3 N -0.140 5.140 4 C 0.010 3.990 5 C -0.001 4.001 6 N -0.169 5.169 7 C -0.074 4.074 8 C -0.069 4.069 9 C -0.008 4.008 10 C -0.561 4.561 11 H 0.078 0.922 12 C -0.143 4.143 13 N -0.532 5.532 14 Si 0.724 3.276 15 H -0.205 1.205 16 H -0.212 1.212 17 H -0.198 1.198 18 N -0.091 5.091 19 O 0.022 5.978 20 C -0.402 4.402 21 S 0.472 5.528 22 H 0.107 0.893 23 H 0.102 0.898 24 H 0.112 0.888 25 H 0.099 0.901 26 H 0.104 0.896 27 H 0.041 0.959 28 H 0.038 0.962 29 H 0.071 0.929 30 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -9.495 -21.136 -8.326 24.622 hybrid contribution 0.926 1.617 0.216 1.876 sum -8.570 -19.519 -8.110 22.808 Atomic orbital electron populations 1.20487 0.84372 1.04688 1.04256 1.27211 1.02501 0.90828 1.04186 1.66477 1.02289 1.30998 1.14216 1.16508 0.87654 0.87584 1.07266 1.24983 0.83586 0.91402 1.00098 1.72338 1.25464 1.01812 1.17323 1.26568 0.82710 1.01017 0.97136 1.20433 1.02482 0.80312 1.03637 1.19092 0.97940 0.96179 0.87603 1.21126 1.49784 0.92529 0.92659 0.92201 1.25022 0.95171 0.98626 0.95525 1.69978 1.49932 1.35953 0.97342 0.86517 0.78296 0.85185 0.77560 1.20538 1.21192 1.19754 1.74619 1.21566 0.90618 1.22340 1.85381 1.18976 1.27200 1.66275 1.26570 1.06700 0.96578 1.10323 1.82793 0.94065 1.11335 1.64596 0.89258 0.89779 0.88752 0.90074 0.89588 0.95863 0.96236 0.92872 0.79117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.47 10.46 36.01 0.38 -0.10 16 2 C 0.03 0.31 7.35 -13.57 -0.10 0.21 16 3 N -0.42 -6.11 10.65 -8.59 -0.09 -6.21 16 4 C 0.14 2.09 6.69 -84.76 -0.57 1.53 16 5 C 0.22 3.97 8.22 -13.91 -0.11 3.85 16 6 N -0.44 -9.25 11.59 -10.17 -0.12 -9.37 16 7 C 0.20 4.33 7.45 -156.57 -1.17 3.17 16 8 C -0.03 -0.67 5.78 -27.88 -0.16 -0.83 16 9 C 0.03 0.83 4.96 -27.88 -0.14 0.69 16 10 C -0.52 -15.14 9.11 -34.44 -0.31 -15.46 16 11 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 12 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 13 N -0.89 -27.61 13.29 55.43 0.74 -26.87 16 14 Si 0.90 21.99 29.54 -169.99 -5.02 16.97 16 15 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 16 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 17 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 18 N -0.38 -7.99 12.14 31.23 0.38 -7.61 16 19 O 0.08 1.45 11.30 16.47 0.19 1.63 16 20 C -0.26 -2.59 10.88 29.61 0.32 -2.27 16 21 S 0.22 1.53 22.93 -107.50 -2.46 -0.94 16 22 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 23 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 24 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 26 H 0.09 1.86 8.14 -51.93 -0.42 1.44 16 27 H 0.02 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 30 H 0.19 1.45 8.06 -52.48 -0.42 1.03 16 LS Contribution 290.22 15.07 4.37 4.37 Total: -1.00 -34.92 290.22 -6.90 -41.83 By element: Atomic # 1 Polarization: -3.30 SS G_CDS: -2.92 Total: -6.22 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: -1.96 Total: -7.59 kcal Atomic # 7 Polarization: -50.96 SS G_CDS: 0.91 Total: -50.06 kcal Atomic # 8 Polarization: 1.45 SS G_CDS: 0.19 Total: 1.63 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Atomic # 16 Polarization: 1.53 SS G_CDS: -2.46 Total: -0.94 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -34.92 -6.90 -41.83 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259776541.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.357 kcal (2) G-P(sol) polarization free energy of solvation -34.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds