Wall clock time and date at job start Mon Mar 30 2020 06:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.28761 * 124.77102 * 2 1 4 4 C 1.32927 * 115.85539 * 180.02562 * 3 2 1 5 5 C 1.47452 * 123.07097 * 180.02562 * 4 3 2 6 6 N 1.32316 * 126.69700 * 0.02870 * 5 4 3 7 7 C 1.34184 * 105.52608 * 179.97438 * 6 5 4 8 8 C 1.50699 * 126.17150 * 180.02562 * 7 6 5 9 9 C 1.52997 * 109.47040 * 90.00083 * 8 7 6 10 10 C 1.50705 * 109.47038 * 179.97438 * 9 8 7 11 11 H 1.07991 * 119.99954 * 0.02562 * 10 9 8 12 12 C 1.37878 * 119.99644 * 180.02562 * 10 9 8 13 13 N 1.31514 * 120.00470 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99601 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47598 * 89.99644 * 14 12 10 16 16 H 1.48505 * 109.46938 * 209.99823 * 14 12 10 17 17 H 1.48501 * 109.47276 * 329.99771 * 14 12 10 18 18 N 1.30044 * 107.65082 * 359.97438 * 7 6 5 19 19 O 1.21279 * 110.53303 * 359.97438 * 18 7 6 20 20 C 1.35083 * 113.86144 * 0.27219 * 4 3 2 21 21 S 1.70799 * 124.77659 * 180.02562 * 2 1 3 22 22 H 1.08995 * 109.47278 * 90.00049 * 1 2 3 23 23 H 1.09002 * 109.47213 * 209.99686 * 1 2 3 24 24 H 1.08997 * 109.47504 * 329.99268 * 1 2 3 25 25 H 1.09003 * 109.47174 * 210.00310 * 8 7 6 26 26 H 1.08998 * 109.47397 * 330.00234 * 8 7 6 27 27 H 1.08994 * 109.47591 * 300.00085 * 9 8 7 28 28 H 1.09003 * 109.46928 * 60.00346 * 9 8 7 29 29 H 0.96999 * 120.00229 * 180.02562 * 13 12 10 30 30 H 1.08006 * 125.60965 * 179.70749 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2413 1.0577 0.0000 4 6 3.5545 0.8517 -0.0005 5 6 4.5409 1.9477 -0.0001 6 7 4.2813 3.2451 0.0014 7 6 5.4785 3.8510 0.0018 8 6 5.7228 5.3381 0.0040 9 6 5.8061 5.8391 1.4472 10 6 6.0511 7.3261 1.4494 11 1 6.1381 7.8604 0.5149 12 6 6.1640 8.0044 2.6444 13 7 6.0585 7.3537 3.7825 14 14 6.4669 9.8477 2.6471 15 1 5.1656 10.5633 2.6494 16 1 7.2390 10.2207 3.8595 17 1 7.2368 10.2246 1.4345 18 7 6.3899 2.9234 0.0012 19 8 5.8779 1.8240 0.0009 20 6 3.9029 -0.4534 -0.0069 21 16 2.4812 -1.4029 -0.0006 22 1 -0.3633 0.0000 -1.0276 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3634 0.8899 0.5139 25 1 6.6597 5.5531 -0.5100 26 1 4.9033 5.8417 -0.5087 27 1 4.8693 5.6241 1.9612 28 1 6.6257 5.3355 1.9599 29 1 6.1375 7.8310 4.6232 30 1 4.9135 -0.8346 -0.0129 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259776541.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:58 Heat of formation + Delta-G solvation = 76.581726 kcal Electronic energy + Delta-G solvation = -16542.762795 eV Core-core repulsion = 13660.070860 eV Total energy + Delta-G solvation = -2882.691935 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.063 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -46.69739 -41.05411 -37.57792 -35.73635 -34.63327 -33.17274 -32.05843 -29.46436 -27.91373 -26.59057 -25.01349 -23.76775 -22.27722 -21.01000 -19.54416 -19.34686 -18.70882 -18.37113 -16.90470 -16.55827 -16.14291 -15.65233 -15.27372 -14.97276 -14.37823 -14.35824 -13.74821 -13.69980 -13.56685 -13.05399 -12.97391 -12.86566 -12.82903 -12.48853 -12.29891 -11.97800 -11.94792 -11.42826 -11.13717 -10.80175 -10.69946 -10.63356 -9.67729 -8.26093 -6.39856 -0.77843 0.06571 0.21572 0.50430 0.96147 1.38288 1.39731 1.42535 1.53840 1.81421 2.37373 2.61689 2.94915 3.07722 3.27541 3.85558 3.95674 4.18139 4.32504 4.43467 4.50755 4.57329 4.74156 4.79154 4.81856 4.94441 5.21050 5.33203 5.45382 5.70203 6.07669 6.51599 6.74739 7.03826 7.30290 8.86959 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.035700 B = 0.003604 C = 0.003420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.131265 B = 7767.809904 C = 8184.451378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.013 3.987 3 N -0.480 5.480 4 C 0.094 3.906 5 C 0.240 3.760 6 N -0.478 5.478 7 C 0.178 3.822 8 C -0.016 4.016 9 C 0.041 3.959 10 C -0.545 4.545 11 H 0.074 0.926 12 C -0.002 4.002 13 N -0.936 5.936 14 Si 0.977 3.023 15 H -0.270 1.270 16 H -0.281 1.281 17 H -0.258 1.258 18 N -0.399 5.399 19 O 0.096 5.904 20 C -0.248 4.248 21 S 0.337 5.663 22 H 0.104 0.896 23 H 0.116 0.884 24 H 0.079 0.921 25 H 0.094 0.906 26 H 0.093 0.907 27 H -0.012 1.012 28 H -0.012 1.012 29 H 0.266 0.734 30 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.370 -22.980 -9.396 26.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.266 4.266 3 N -0.196 5.196 4 C -0.041 4.041 5 C 0.020 3.980 6 N -0.212 5.212 7 C -0.094 4.094 8 C -0.055 4.055 9 C 0.003 3.997 10 C -0.583 4.583 11 H 0.092 0.908 12 C -0.200 4.200 13 N -0.576 5.576 14 Si 0.800 3.200 15 H -0.196 1.196 16 H -0.207 1.207 17 H -0.182 1.182 18 N -0.106 5.106 19 O 0.035 5.965 20 C -0.393 4.393 21 S 0.595 5.405 22 H 0.123 0.877 23 H 0.135 0.865 24 H 0.098 0.902 25 H 0.112 0.888 26 H 0.112 0.888 27 H 0.006 0.994 28 H 0.007 0.993 29 H 0.074 0.926 30 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -10.232 -22.919 -9.225 26.740 hybrid contribution 1.030 1.830 0.502 2.159 sum -9.202 -21.088 -8.723 24.607 Atomic orbital electron populations 1.20694 0.82213 1.05589 1.05520 1.27814 1.04102 0.91646 1.03004 1.66418 1.02683 1.34009 1.16494 1.16500 0.87539 0.87801 1.12267 1.25680 0.83804 0.91598 0.96882 1.72288 1.25398 1.03573 1.19896 1.26342 0.83479 1.00806 0.98750 1.20118 1.03473 0.81427 1.00459 1.18853 0.94732 0.96064 0.90080 1.21575 1.49880 0.93279 0.93531 0.90833 1.26102 0.94471 1.04491 0.94897 1.70132 1.50799 1.38417 0.98215 0.85273 0.78601 0.77975 0.78138 1.19552 1.20682 1.18155 1.74543 1.21972 0.91136 1.22906 1.85321 1.19202 1.25907 1.66022 1.27089 1.09790 0.95789 1.06600 1.82412 0.90028 1.07240 1.60861 0.87720 0.86535 0.90212 0.88800 0.88810 0.99398 0.99343 0.92579 0.76793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.79 10.46 71.24 0.75 -0.05 16 2 C 0.01 0.22 7.35 88.56 0.65 0.87 16 3 N -0.48 -13.75 10.65 -181.08 -1.93 -15.68 16 4 C 0.09 2.68 6.69 40.68 0.27 2.95 16 5 C 0.24 8.89 8.22 87.16 0.72 9.61 16 6 N -0.48 -21.30 11.59 -302.54 -3.51 -24.81 16 7 C 0.18 8.17 7.45 138.53 1.03 9.20 16 8 C -0.02 -0.75 5.78 29.85 0.17 -0.58 16 9 C 0.04 2.38 4.96 29.85 0.15 2.53 16 10 C -0.54 -32.28 9.11 25.60 0.23 -32.04 16 11 H 0.07 4.05 7.74 -2.92 -0.02 4.03 16 12 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 13 N -0.94 -59.49 13.29 21.45 0.28 -59.21 16 14 Si 0.98 45.33 29.54 68.60 2.03 47.36 16 15 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 16 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 17 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 18 N -0.40 -17.10 12.14 -58.38 -0.71 -17.81 16 19 O 0.10 3.51 11.30 69.01 0.78 4.29 16 20 C -0.25 -4.36 10.88 67.09 0.73 -3.63 16 21 S 0.34 3.43 22.93 -56.49 -1.30 2.13 16 22 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 23 H 0.12 0.35 8.14 -2.39 -0.02 0.33 16 24 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.09 4.11 8.14 -2.39 -0.02 4.09 16 26 H 0.09 4.21 8.14 -2.39 -0.02 4.19 16 27 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 28 H -0.01 -0.75 8.14 -2.39 -0.02 -0.76 16 29 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 30 H 0.22 2.54 8.06 -2.91 -0.02 2.52 16 Total: -1.00 -80.18 290.22 1.98 -78.20 By element: Atomic # 1 Polarization: -4.85 SS G_CDS: 1.17 Total: -3.69 kcal Atomic # 6 Polarization: -15.95 SS G_CDS: 5.16 Total: -10.79 kcal Atomic # 7 Polarization: -111.64 SS G_CDS: -5.86 Total: -117.50 kcal Atomic # 8 Polarization: 3.51 SS G_CDS: 0.78 Total: 4.29 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Atomic # 16 Polarization: 3.43 SS G_CDS: -1.30 Total: 2.13 kcal Total: -80.18 1.98 -78.20 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259776541.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.781 kcal (2) G-P(sol) polarization free energy of solvation -80.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds