Wall clock time and date at job start Mon Mar 30 2020 06:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 120.00004 * 2 1 4 4 H 1.48507 * 109.46925 * 269.99941 * 3 2 1 5 5 H 1.48496 * 109.47160 * 29.99445 * 3 2 1 6 6 H 1.48496 * 109.47285 * 150.00033 * 3 2 1 7 7 C 1.37883 * 119.99714 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00346 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99729 * 180.02562 * 7 2 1 10 10 H 1.09009 * 109.59802 * 334.94904 * 9 7 2 11 11 C 1.55147 * 109.60448 * 214.81419 * 9 7 2 12 12 S 1.83988 * 100.91128 * 198.63017 * 11 9 7 13 13 C 1.83400 * 95.84908 * 35.34765 * 12 11 9 14 14 H 1.09002 * 110.43224 * 99.17223 * 13 12 11 15 15 C 1.50709 * 110.34096 * 221.38004 * 13 12 11 16 16 C 1.38164 * 120.02783 * 210.78045 * 15 13 12 17 17 C 1.38244 * 120.05604 * 180.25205 * 16 15 13 18 18 C 1.38284 * 120.10844 * 359.76408 * 17 16 15 19 19 C 1.38122 * 120.05974 * 0.02562 * 18 17 16 20 20 C 1.38707 * 120.02638 * 30.54039 * 15 13 12 21 21 O 1.35903 * 120.05681 * 0.02562 * 20 15 13 22 22 C 1.52939 * 109.60598 * 95.27270 * 9 7 2 23 23 H 1.09001 * 108.88974 * 270.82824 * 22 9 7 24 24 N 1.46902 * 108.88572 * 29.23635 * 22 9 7 25 25 H 0.96996 * 119.99995 * 0.02562 * 1 2 3 26 26 H 1.09002 * 111.13043 * 316.53870 * 11 9 7 27 27 H 1.08995 * 111.13594 * 80.67829 * 11 9 7 28 28 H 1.08004 * 119.97386 * 359.97438 * 16 15 13 29 29 H 1.08000 * 119.94707 * 179.74530 * 17 16 15 30 30 H 1.08005 * 119.97150 * 179.97438 * 18 17 16 31 31 H 1.07995 * 120.03076 * 179.97438 * 19 18 17 32 32 H 0.96695 * 113.99929 * 269.71875 * 21 20 15 33 33 H 1.00898 * 111.00317 * 175.92561 * 24 22 9 34 34 H 1.00904 * 110.99715 * 299.88020 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4466 2.6526 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 1 3.8773 -0.2639 -0.4338 11 6 4.0324 -2.3943 -0.8328 12 16 5.7617 -2.5214 -0.2177 13 6 5.3803 -2.0456 1.5120 14 1 5.3045 -2.9315 2.1425 15 6 6.4384 -1.1138 2.0445 16 6 6.7492 -1.1178 3.3907 17 6 7.7160 -0.2597 3.8806 18 6 8.3778 0.6012 3.0243 19 6 8.0738 0.6060 1.6770 20 6 7.1045 -0.2550 1.1826 21 8 6.8037 -0.2523 -0.1427 22 6 4.0242 -1.3262 1.4360 23 1 4.1284 -0.3303 1.8666 24 7 3.0409 -2.0806 2.2247 25 1 -0.4850 0.8400 -0.0004 26 1 3.4690 -3.3007 -0.6113 27 1 4.0096 -2.1711 -1.8994 28 1 6.2332 -1.7887 4.0616 29 1 7.9546 -0.2614 4.9339 30 1 9.1324 1.2710 3.4096 31 1 8.5907 1.2787 1.0087 32 1 7.3345 -0.8668 -0.6677 33 1 3.3776 -2.2441 3.1616 34 1 2.1492 -1.6084 2.2381 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259787716.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:11 Heat of formation + Delta-G solvation = -6.968868 kcal Electronic energy + Delta-G solvation = -18442.782391 eV Core-core repulsion = 15660.007773 eV Total energy + Delta-G solvation = -2782.774617 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.74381 -36.74834 -36.24825 -32.84396 -31.55267 -30.39144 -29.70306 -26.97452 -25.43612 -22.90997 -22.42247 -21.21100 -18.82666 -18.02066 -17.10753 -16.31835 -16.09172 -15.31592 -14.95470 -14.56547 -14.35663 -14.06681 -13.66450 -13.29039 -12.69179 -12.59890 -12.48486 -12.10949 -11.83015 -11.68158 -11.22438 -11.06584 -10.92304 -10.64025 -10.38127 -10.21409 -9.82700 -9.33611 -9.09585 -8.74326 -8.66757 -8.31417 -7.69286 -6.75815 -6.18093 -4.16613 1.33444 1.41513 2.51036 3.01744 3.24201 3.32533 3.39770 3.77819 4.33509 4.58820 4.78760 4.99263 5.05685 5.11158 5.34558 5.40127 5.62146 5.68256 5.79067 5.94885 6.02481 6.07189 6.11378 6.39436 6.45759 6.49946 6.55339 6.65011 6.92929 6.96932 7.09281 7.56153 8.04588 8.12067 8.42934 8.47419 8.93470 9.43256 10.93256 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.021215 B = 0.008193 C = 0.007516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.492126 B = 3416.848568 C = 3724.630942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.072 3.928 3 Si 0.866 3.134 4 H -0.274 1.274 5 H -0.290 1.290 6 H -0.262 1.262 7 C -0.493 4.493 8 H 0.084 0.916 9 C 0.023 3.977 10 H 0.049 0.951 11 C -0.025 4.025 12 S -0.329 6.329 13 C 0.015 3.985 14 H 0.102 0.898 15 C -0.099 4.099 16 C -0.097 4.097 17 C -0.136 4.136 18 C -0.110 4.110 19 C -0.155 4.155 20 C 0.132 3.868 21 O -0.476 6.476 22 C 0.102 3.898 23 H 0.029 0.971 24 N -0.829 5.829 25 H 0.265 0.735 26 H 0.086 0.914 27 H 0.089 0.911 28 H 0.124 0.876 29 H 0.121 0.879 30 H 0.121 0.879 31 H 0.125 0.875 32 H 0.390 0.610 33 H 0.310 0.690 34 H 0.364 0.636 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.774 -0.760 5.417 15.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.131 4.131 3 Si 0.693 3.307 4 H -0.200 1.200 5 H -0.216 1.216 6 H -0.187 1.187 7 C -0.533 4.533 8 H 0.102 0.898 9 C 0.002 3.998 10 H 0.067 0.933 11 C -0.173 4.173 12 S -0.099 6.099 13 C -0.114 4.114 14 H 0.120 0.880 15 C -0.101 4.101 16 C -0.117 4.117 17 C -0.155 4.155 18 C -0.128 4.128 19 C -0.174 4.174 20 C 0.085 3.915 21 O -0.290 6.290 22 C -0.011 4.011 23 H 0.047 0.953 24 N -0.363 5.363 25 H 0.075 0.925 26 H 0.105 0.895 27 H 0.108 0.892 28 H 0.142 0.858 29 H 0.139 0.861 30 H 0.139 0.861 31 H 0.143 0.857 32 H 0.251 0.749 33 H 0.120 0.880 34 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 15.310 -1.140 4.402 15.971 hybrid contribution -0.327 1.866 1.082 2.182 sum 14.982 0.726 5.484 15.971 Atomic orbital electron populations 1.69892 1.06108 1.27024 1.49896 1.25089 0.94721 0.98744 0.94562 0.87020 0.80428 0.84089 0.79119 1.19982 1.21603 1.18683 1.20807 0.87626 0.94678 1.50184 0.89790 1.19946 0.97564 0.93759 0.88545 0.93296 1.24502 0.87775 1.03119 1.01859 1.86614 1.21106 1.89519 1.12632 1.22574 0.95476 0.98817 0.94505 0.87989 1.20112 0.98536 0.97430 0.94065 1.20887 0.97531 0.99238 0.94035 1.21030 0.97589 0.97232 0.99603 1.20969 0.99849 0.98935 0.93087 1.21492 0.98689 1.00856 0.96331 1.18372 0.93464 0.94220 0.85450 1.85111 1.63505 1.65958 1.14469 1.22030 0.87091 0.93079 0.98927 0.95348 1.58925 1.06862 1.55213 1.15306 0.92536 0.89508 0.89212 0.85802 0.86050 0.86087 0.85669 0.74940 0.87978 0.81754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.87 13.96 55.43 0.77 -25.10 16 2 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 3 Si 0.87 21.28 26.97 -169.99 -4.59 16.69 16 4 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.26 -6.46 6.03 56.52 0.34 -6.12 16 7 C -0.49 -12.86 6.70 -34.44 -0.23 -13.09 16 8 H 0.08 2.40 8.06 -52.49 -0.42 1.98 16 9 C 0.02 0.52 1.97 -90.67 -0.18 0.34 16 10 H 0.05 1.20 5.43 -51.92 -0.28 0.92 16 11 C -0.03 -0.51 6.85 38.29 0.26 -0.25 16 12 S -0.33 -5.88 18.40 -107.50 -1.98 -7.86 16 13 C 0.02 0.27 3.17 -27.52 -0.09 0.18 16 14 H 0.10 1.74 7.75 -51.93 -0.40 1.34 16 15 C -0.10 -1.63 4.73 -104.47 -0.49 -2.13 16 16 C -0.10 -1.36 9.70 -39.61 -0.38 -1.74 16 17 C -0.14 -1.67 10.04 -39.56 -0.40 -2.07 16 18 C -0.11 -1.35 10.04 -39.61 -0.40 -1.74 16 19 C -0.15 -2.18 9.99 -39.43 -0.39 -2.57 16 20 C 0.13 2.18 6.48 -39.22 -0.25 1.92 16 21 O -0.48 -8.21 10.92 -19.44 -0.21 -8.42 16 22 C 0.10 2.09 3.24 -67.38 -0.22 1.87 16 23 H 0.03 0.65 6.84 -51.93 -0.36 0.29 16 24 N -0.83 -16.25 8.62 -4.38 -0.04 -16.29 16 25 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 26 H 0.09 1.80 8.10 -51.93 -0.42 1.38 16 27 H 0.09 1.74 8.14 -51.93 -0.42 1.32 16 28 H 0.12 1.49 8.06 -52.48 -0.42 1.07 16 29 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 30 H 0.12 1.14 8.06 -52.48 -0.42 0.71 16 31 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 32 H 0.39 5.62 7.45 49.38 0.37 5.99 16 33 H 0.31 5.11 8.85 -39.29 -0.35 4.76 16 34 H 0.36 7.90 7.42 -39.29 -0.29 7.61 16 LS Contribution 286.06 15.07 4.31 4.31 Total: -1.00 -29.03 286.06 -8.06 -37.09 By element: Atomic # 1 Polarization: 20.44 SS G_CDS: -3.46 Total: 16.98 kcal Atomic # 6 Polarization: -14.53 SS G_CDS: -2.87 Total: -17.40 kcal Atomic # 7 Polarization: -42.13 SS G_CDS: 0.74 Total: -41.39 kcal Atomic # 8 Polarization: -8.21 SS G_CDS: -0.21 Total: -8.42 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.59 Total: 16.69 kcal Atomic # 16 Polarization: -5.88 SS G_CDS: -1.98 Total: -7.86 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -29.03 -8.06 -37.09 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259787716.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.125 kcal (2) G-P(sol) polarization free energy of solvation -29.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds