Wall clock time and date at job start Mon Mar 30 2020 06:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 120.00004 * 2 1 4 4 H 1.48507 * 109.46925 * 269.99941 * 3 2 1 5 5 H 1.48496 * 109.47160 * 29.99445 * 3 2 1 6 6 H 1.48496 * 109.47285 * 150.00033 * 3 2 1 7 7 C 1.37883 * 119.99714 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00346 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99729 * 180.02562 * 7 2 1 10 10 H 1.09009 * 109.59802 * 334.94904 * 9 7 2 11 11 C 1.55147 * 109.60448 * 214.81419 * 9 7 2 12 12 S 1.83988 * 100.91128 * 198.63017 * 11 9 7 13 13 C 1.83400 * 95.84908 * 35.34765 * 12 11 9 14 14 H 1.09002 * 110.43224 * 99.17223 * 13 12 11 15 15 C 1.50709 * 110.34096 * 221.38004 * 13 12 11 16 16 C 1.38164 * 120.02783 * 210.78045 * 15 13 12 17 17 C 1.38244 * 120.05604 * 180.25205 * 16 15 13 18 18 C 1.38284 * 120.10844 * 359.76408 * 17 16 15 19 19 C 1.38122 * 120.05974 * 0.02562 * 18 17 16 20 20 C 1.38707 * 120.02638 * 30.54039 * 15 13 12 21 21 O 1.35903 * 120.05681 * 0.02562 * 20 15 13 22 22 C 1.52939 * 109.60598 * 95.27270 * 9 7 2 23 23 H 1.09001 * 108.88974 * 270.82824 * 22 9 7 24 24 N 1.46902 * 108.88572 * 29.23635 * 22 9 7 25 25 H 0.96996 * 119.99995 * 0.02562 * 1 2 3 26 26 H 1.09002 * 111.13043 * 316.53870 * 11 9 7 27 27 H 1.08995 * 111.13594 * 80.67829 * 11 9 7 28 28 H 1.08004 * 119.97386 * 359.97438 * 16 15 13 29 29 H 1.08000 * 119.94707 * 179.74530 * 17 16 15 30 30 H 1.08005 * 119.97150 * 179.97438 * 18 17 16 31 31 H 1.07995 * 120.03076 * 179.97438 * 19 18 17 32 32 H 0.96695 * 113.99929 * 269.71875 * 21 20 15 33 33 H 1.00898 * 111.00317 * 175.92561 * 24 22 9 34 34 H 1.00904 * 110.99715 * 299.88020 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4466 2.6526 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 1 3.8773 -0.2639 -0.4338 11 6 4.0324 -2.3943 -0.8328 12 16 5.7617 -2.5214 -0.2177 13 6 5.3803 -2.0456 1.5120 14 1 5.3045 -2.9315 2.1425 15 6 6.4384 -1.1138 2.0445 16 6 6.7492 -1.1178 3.3907 17 6 7.7160 -0.2597 3.8806 18 6 8.3778 0.6012 3.0243 19 6 8.0738 0.6060 1.6770 20 6 7.1045 -0.2550 1.1826 21 8 6.8037 -0.2523 -0.1427 22 6 4.0242 -1.3262 1.4360 23 1 4.1284 -0.3303 1.8666 24 7 3.0409 -2.0806 2.2247 25 1 -0.4850 0.8400 -0.0004 26 1 3.4690 -3.3007 -0.6113 27 1 4.0096 -2.1711 -1.8994 28 1 6.2332 -1.7887 4.0616 29 1 7.9546 -0.2614 4.9339 30 1 9.1324 1.2710 3.4096 31 1 8.5907 1.2787 1.0087 32 1 7.3345 -0.8668 -0.6677 33 1 3.3776 -2.2441 3.1616 34 1 2.1492 -1.6084 2.2381 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259787716.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:11 Heat of formation + Delta-G solvation = -27.233824 kcal Electronic energy + Delta-G solvation = -18443.661145 eV Core-core repulsion = 15660.007773 eV Total energy + Delta-G solvation = -2783.653372 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.88450 -38.39904 -37.40333 -34.68448 -33.04820 -32.06316 -30.78160 -28.40302 -27.26379 -24.51367 -23.49121 -22.49963 -20.57114 -19.20306 -19.08204 -17.66940 -17.31750 -16.65752 -16.38955 -16.27577 -15.95313 -15.41327 -15.04032 -14.73196 -14.46748 -14.17361 -13.90876 -13.41343 -13.12553 -13.07359 -12.88251 -12.75717 -12.40937 -12.20638 -12.00967 -11.76709 -11.47355 -11.29878 -10.81174 -10.72249 -9.81025 -9.44085 -9.34688 -8.31212 -8.17337 -6.30779 0.22982 0.37673 1.08695 1.24622 1.31186 1.40599 1.46006 2.27977 2.71964 3.03234 3.45927 3.53670 3.80821 3.96730 4.15524 4.19232 4.20499 4.33312 4.40526 4.53310 4.60302 4.75409 4.80419 4.95834 5.04782 5.20937 5.25154 5.43044 5.53044 5.55024 5.56259 5.95626 6.22728 6.52144 6.70318 6.90516 6.98222 7.30864 8.83813 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.021215 B = 0.008193 C = 0.007516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.492126 B = 3416.848568 C = 3724.630942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.027 3.973 3 Si 0.923 3.077 4 H -0.273 1.273 5 H -0.288 1.288 6 H -0.263 1.263 7 C -0.478 4.478 8 H 0.051 0.949 9 C 0.020 3.980 10 H 0.033 0.967 11 C -0.034 4.034 12 S -0.291 6.291 13 C 0.020 3.980 14 H 0.111 0.889 15 C -0.127 4.127 16 C -0.102 4.102 17 C -0.131 4.131 18 C -0.103 4.103 19 C -0.163 4.163 20 C 0.104 3.896 21 O -0.495 6.495 22 C 0.110 3.890 23 H 0.008 0.992 24 N -0.830 5.830 25 H 0.265 0.735 26 H 0.079 0.921 27 H 0.095 0.905 28 H 0.141 0.859 29 H 0.156 0.844 30 H 0.156 0.844 31 H 0.139 0.861 32 H 0.396 0.604 33 H 0.331 0.669 34 H 0.351 0.649 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.503 -0.297 6.959 18.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.172 4.172 3 Si 0.749 3.251 4 H -0.199 1.199 5 H -0.214 1.214 6 H -0.188 1.188 7 C -0.518 4.518 8 H 0.069 0.931 9 C -0.001 4.001 10 H 0.051 0.949 11 C -0.182 4.182 12 S -0.061 6.061 13 C -0.109 4.109 14 H 0.129 0.871 15 C -0.130 4.130 16 C -0.121 4.121 17 C -0.149 4.149 18 C -0.121 4.121 19 C -0.182 4.182 20 C 0.057 3.943 21 O -0.310 6.310 22 C -0.003 4.003 23 H 0.025 0.975 24 N -0.363 5.363 25 H 0.075 0.925 26 H 0.097 0.903 27 H 0.113 0.887 28 H 0.159 0.841 29 H 0.173 0.827 30 H 0.173 0.827 31 H 0.157 0.843 32 H 0.257 0.743 33 H 0.143 0.857 34 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 18.071 -0.691 5.956 19.040 hybrid contribution -1.075 1.662 0.674 2.091 sum 16.996 0.971 6.630 18.269 Atomic orbital electron populations 1.70000 1.07472 1.27674 1.52320 1.25645 0.95169 1.01453 0.94919 0.86121 0.79102 0.80942 0.78909 1.19891 1.21402 1.18795 1.20847 0.89381 0.93107 1.48460 0.93075 1.19895 0.95373 0.94178 0.90616 0.94850 1.24303 0.90247 1.01606 1.02013 1.86460 1.17800 1.89462 1.12392 1.22524 0.94390 0.99280 0.94733 0.87112 1.20128 0.99129 0.98281 0.95417 1.21182 0.97947 0.99827 0.93192 1.21462 0.96229 0.95902 1.01345 1.21422 0.99751 0.98682 0.92208 1.21728 0.98246 1.00532 0.97658 1.18690 0.94948 0.95541 0.85077 1.85074 1.64236 1.66335 1.15336 1.21806 0.88802 0.92697 0.96991 0.97452 1.58851 1.06124 1.54503 1.16836 0.92545 0.90279 0.88676 0.84127 0.82665 0.82682 0.84296 0.74263 0.85707 0.83277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.68 13.96 21.45 0.30 -55.38 16 2 C 0.03 1.49 5.47 84.66 0.46 1.96 16 3 Si 0.92 44.78 26.97 68.60 1.85 46.63 16 4 H -0.27 -13.12 7.11 99.48 0.71 -12.41 16 5 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 6 H -0.26 -12.73 6.03 99.48 0.60 -12.13 16 7 C -0.48 -25.58 6.70 25.60 0.17 -25.41 16 8 H 0.05 3.04 8.06 -2.91 -0.02 3.02 16 9 C 0.02 0.94 1.97 -10.82 -0.02 0.91 16 10 H 0.03 1.64 5.43 -2.38 -0.01 1.63 16 11 C -0.03 -1.37 6.85 72.72 0.50 -0.87 16 12 S -0.29 -10.10 18.40 -56.49 -1.04 -11.14 16 13 C 0.02 0.67 3.17 30.09 0.10 0.77 16 14 H 0.11 3.57 7.75 -2.39 -0.02 3.55 16 15 C -0.13 -3.96 4.73 -19.77 -0.09 -4.05 16 16 C -0.10 -2.54 9.70 22.25 0.22 -2.32 16 17 C -0.13 -2.65 10.04 22.28 0.22 -2.43 16 18 C -0.10 -2.08 10.04 22.25 0.22 -1.86 16 19 C -0.16 -4.13 9.99 22.37 0.22 -3.91 16 20 C 0.10 3.25 6.48 22.51 0.15 3.40 16 21 O -0.49 -16.60 10.92 -92.46 -1.01 -17.61 16 22 C 0.11 4.50 3.24 45.13 0.15 4.64 16 23 H 0.01 0.34 6.84 -2.39 -0.02 0.33 16 24 N -0.83 -32.37 8.62 -167.78 -1.45 -33.82 16 25 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 26 H 0.08 3.31 8.10 -2.39 -0.02 3.29 16 27 H 0.09 3.70 8.14 -2.39 -0.02 3.68 16 28 H 0.14 2.91 8.06 -2.91 -0.02 2.89 16 29 H 0.16 2.07 8.06 -2.91 -0.02 2.05 16 30 H 0.16 2.07 8.06 -2.91 -0.02 2.05 16 31 H 0.14 3.02 8.06 -2.91 -0.02 3.00 16 32 H 0.40 11.10 7.45 -76.49 -0.57 10.53 16 33 H 0.33 10.52 8.85 -89.70 -0.79 9.72 16 34 H 0.35 15.49 7.42 -89.69 -0.67 14.82 16 Total: -1.00 -63.27 286.06 -0.04 -63.32 By element: Atomic # 1 Polarization: 38.16 SS G_CDS: -0.99 Total: 37.17 kcal Atomic # 6 Polarization: -31.46 SS G_CDS: 2.29 Total: -29.17 kcal Atomic # 7 Polarization: -88.05 SS G_CDS: -1.15 Total: -89.20 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: -1.01 Total: -17.61 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 1.85 Total: 46.63 kcal Atomic # 16 Polarization: -10.10 SS G_CDS: -1.04 Total: -11.14 kcal Total: -63.27 -0.04 -63.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259787716.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.084 kcal (2) G-P(sol) polarization free energy of solvation -63.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds