Wall clock time and date at job start Mon Mar 30 2020 06:42:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86792 * 119.99808 * 2 1 4 4 H 1.48501 * 109.46932 * 180.02562 * 3 2 1 5 5 H 1.48490 * 109.47602 * 300.00226 * 3 2 1 6 6 H 1.48499 * 109.47142 * 60.00557 * 3 2 1 7 7 C 1.37874 * 119.99701 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99979 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00171 * 359.97438 * 7 2 1 10 10 H 1.08990 * 108.85239 * 333.72891 * 9 7 2 11 11 C 1.53712 * 108.88924 * 215.14818 * 9 7 2 12 12 S 1.83386 * 104.97164 * 236.52327 * 11 9 7 13 13 C 1.83985 * 95.85435 * 340.25102 * 12 11 9 14 14 H 1.09003 * 111.13325 * 277.40074 * 13 12 11 15 15 C 1.50697 * 111.13484 * 153.26183 * 13 12 11 16 16 C 1.38175 * 120.02745 * 340.19374 * 15 13 12 17 17 C 1.38241 * 120.05565 * 180.25702 * 16 15 13 18 18 C 1.38294 * 120.11106 * 359.76176 * 17 16 15 19 19 C 1.38116 * 120.05391 * 359.95791 * 18 17 16 20 20 C 1.38709 * 120.03276 * 159.91745 * 15 13 12 21 21 O 1.35908 * 120.05087 * 359.97438 * 20 15 13 22 22 C 1.52979 * 108.79324 * 92.19986 * 9 7 2 23 23 H 1.09000 * 109.65253 * 270.71686 * 22 9 7 24 24 N 1.46900 * 109.58001 * 30.86761 * 22 9 7 25 25 H 0.97002 * 119.99904 * 359.97438 * 1 2 3 26 26 H 1.09002 * 110.33648 * 117.64494 * 11 9 7 27 27 H 1.09001 * 110.33626 * 355.39930 * 11 9 7 28 28 H 1.07999 * 119.97323 * 359.97438 * 16 15 13 29 29 H 1.07999 * 119.94443 * 179.74516 * 17 16 15 30 30 H 1.08004 * 119.97103 * 179.97438 * 18 17 16 31 31 H 1.08010 * 120.02783 * 180.02562 * 19 18 17 32 32 H 0.96702 * 113.99544 * 269.72819 * 21 20 15 33 33 H 1.00900 * 111.00619 * 174.51033 * 24 22 9 34 34 H 1.00897 * 111.00332 * 298.46837 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.2741 -2.3418 0.4564 11 6 2.0323 -3.5249 0.8362 12 16 2.3230 -4.9375 -0.2966 13 6 0.9871 -4.5032 -1.4848 14 1 0.0192 -4.8642 -1.1370 15 6 1.2949 -5.0271 -2.8638 16 6 2.5927 -5.3575 -3.2041 17 6 2.8766 -5.8331 -4.4707 18 6 1.8623 -5.9842 -5.3986 19 6 0.5626 -5.6608 -5.0614 20 6 0.2749 -5.1835 -3.7907 21 8 -1.0033 -4.8650 -3.4563 22 6 1.0522 -2.9534 -1.4477 23 1 0.1225 -2.5390 -1.8376 24 7 2.1776 -2.4877 -2.2689 25 1 -0.4850 0.8401 0.0004 26 1 1.4407 -3.8430 1.6946 27 1 2.9813 -3.1014 1.1651 28 1 3.3867 -5.2397 -2.4815 29 1 3.8922 -6.0869 -4.7361 30 1 2.0867 -6.3556 -6.3876 31 1 -0.2293 -5.7793 -5.7862 32 1 -1.5059 -5.6001 -3.0793 33 1 2.1144 -2.8505 -3.2083 34 1 2.2295 -1.4801 -2.2733 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259787718.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:13 Heat of formation + Delta-G solvation = -17.826433 kcal Electronic energy + Delta-G solvation = -18216.762948 eV Core-core repulsion = 15433.517511 eV Total energy + Delta-G solvation = -2783.245437 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.74823 -36.60999 -36.32008 -32.89257 -31.23248 -30.00081 -29.64823 -26.98320 -25.11444 -23.07706 -22.39786 -21.00990 -18.81648 -18.10618 -16.49855 -16.31799 -15.74636 -15.46273 -14.74984 -14.62103 -14.49340 -13.99574 -13.54375 -13.23799 -12.78982 -12.47619 -12.12607 -11.78782 -11.64709 -11.32153 -11.22645 -11.01430 -10.79329 -10.60730 -10.36780 -10.15840 -9.91212 -9.19435 -8.83457 -8.61691 -8.53107 -8.31617 -7.42478 -6.81500 -6.12910 -4.13167 1.40744 1.54248 2.67758 3.19675 3.26657 3.33881 3.39254 3.85423 4.36165 4.39366 4.94755 5.12227 5.20216 5.25420 5.46962 5.54646 5.70786 5.81975 5.99541 6.11987 6.16920 6.24661 6.31243 6.49641 6.56261 6.68647 6.80790 6.83018 7.05034 7.28031 7.53256 7.81819 7.82194 8.13466 8.46840 8.64046 8.96141 9.48354 10.96189 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.024202 B = 0.006603 C = 0.006211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.647377 B = 4239.784054 C = 4507.263767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.270 1.270 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.487 4.487 8 H 0.065 0.935 9 C 0.032 3.968 10 H 0.062 0.938 11 C -0.040 4.040 12 S -0.317 6.317 13 C 0.009 3.991 14 H 0.091 0.909 15 C -0.077 4.077 16 C -0.075 4.075 17 C -0.133 4.133 18 C -0.113 4.113 19 C -0.152 4.152 20 C 0.105 3.895 21 O -0.493 6.493 22 C 0.118 3.882 23 H 0.040 0.960 24 N -0.820 5.820 25 H 0.261 0.739 26 H 0.063 0.937 27 H 0.089 0.911 28 H 0.147 0.853 29 H 0.121 0.879 30 H 0.120 0.880 31 H 0.123 0.877 32 H 0.385 0.615 33 H 0.309 0.691 34 H 0.353 0.647 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.704 -10.822 -7.374 13.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.195 1.195 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.526 4.526 8 H 0.083 0.917 9 C 0.012 3.988 10 H 0.080 0.920 11 C -0.187 4.187 12 S -0.088 6.088 13 C -0.120 4.120 14 H 0.109 0.891 15 C -0.079 4.079 16 C -0.094 4.094 17 C -0.151 4.151 18 C -0.132 4.132 19 C -0.171 4.171 20 C 0.059 3.941 21 O -0.303 6.303 22 C 0.005 3.995 23 H 0.058 0.942 24 N -0.352 5.352 25 H 0.071 0.929 26 H 0.082 0.918 27 H 0.108 0.892 28 H 0.165 0.835 29 H 0.139 0.861 30 H 0.138 0.862 31 H 0.141 0.859 32 H 0.240 0.760 33 H 0.121 0.879 34 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 1.973 -11.415 -6.955 13.512 hybrid contribution -1.424 1.947 -0.485 2.460 sum 0.549 -9.468 -7.439 12.053 Atomic orbital electron populations 1.69938 1.05978 1.26731 1.50626 1.25077 0.94894 0.99412 0.95153 0.86511 0.80335 0.83567 0.77526 1.19480 1.21171 1.21116 1.21035 0.93233 0.88977 1.49401 0.91687 1.19373 0.97507 0.93322 0.88572 0.91970 1.24253 1.03711 0.93253 0.97529 1.86906 1.50296 1.40992 1.30632 1.23011 0.97593 0.99764 0.91639 0.89103 1.19793 0.93792 0.99824 0.94526 1.21367 0.96349 0.95139 0.96554 1.21181 0.99127 1.01031 0.93801 1.20959 0.92480 1.00385 0.99340 1.21273 0.97556 1.01892 0.96367 1.18321 0.84285 0.98928 0.92544 1.84890 1.21697 1.39668 1.84012 1.22082 0.92391 0.87167 0.97868 0.94224 1.58825 1.46193 1.16459 1.13744 0.92896 0.91820 0.89242 0.83542 0.86055 0.86202 0.85917 0.76017 0.87941 0.83058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.82 12.79 55.43 0.71 -24.11 16 2 C 0.06 1.48 5.46 -17.82 -0.10 1.39 16 3 Si 0.89 20.64 29.54 -169.99 -5.02 15.61 16 4 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.49 -12.46 5.93 -34.44 -0.20 -12.67 16 8 H 0.06 1.71 7.67 -52.49 -0.40 1.31 16 9 C 0.03 0.77 2.64 -91.41 -0.24 0.53 16 10 H 0.06 1.65 7.30 -51.93 -0.38 1.27 16 11 C -0.04 -0.84 6.98 37.53 0.26 -0.57 16 12 S -0.32 -6.12 20.51 -107.50 -2.21 -8.33 16 13 C 0.01 0.17 3.13 -26.74 -0.08 0.08 16 14 H 0.09 1.66 7.79 -51.93 -0.40 1.26 16 15 C -0.08 -1.29 3.87 -104.47 -0.40 -1.69 16 16 C -0.08 -1.19 8.20 -39.60 -0.32 -1.51 16 17 C -0.13 -1.75 10.04 -39.56 -0.40 -2.15 16 18 C -0.11 -1.38 10.04 -39.61 -0.40 -1.78 16 19 C -0.15 -2.00 9.99 -39.44 -0.39 -2.40 16 20 C 0.11 1.60 6.68 -39.22 -0.26 1.34 16 21 O -0.49 -7.24 12.70 -19.45 -0.25 -7.49 16 22 C 0.12 2.58 3.31 -66.58 -0.22 2.36 16 23 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 24 N -0.82 -17.18 8.23 -3.71 -0.03 -17.21 16 25 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 26 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 27 H 0.09 1.94 7.54 -51.93 -0.39 1.55 16 28 H 0.15 2.50 6.41 -52.49 -0.34 2.17 16 29 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 30 H 0.12 1.13 8.06 -52.48 -0.42 0.70 16 31 H 0.12 1.38 8.06 -52.48 -0.42 0.95 16 32 H 0.38 3.77 9.06 45.56 0.41 4.18 16 33 H 0.31 6.06 6.95 -39.29 -0.27 5.78 16 34 H 0.35 7.94 7.50 -39.29 -0.29 7.65 16 LS Contribution 290.34 15.07 4.38 4.38 Total: -1.00 -28.24 290.34 -8.50 -36.74 By element: Atomic # 1 Polarization: 20.79 SS G_CDS: -3.32 Total: 17.47 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: -2.76 Total: -17.07 kcal Atomic # 7 Polarization: -41.99 SS G_CDS: 0.68 Total: -41.31 kcal Atomic # 8 Polarization: -7.24 SS G_CDS: -0.25 Total: -7.49 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.61 kcal Atomic # 16 Polarization: -6.12 SS G_CDS: -2.21 Total: -8.33 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -28.24 -8.50 -36.74 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259787718.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.911 kcal (2) G-P(sol) polarization free energy of solvation -28.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds