Wall clock time and date at job start Mon Mar 30 2020 06:42:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86792 * 119.99808 * 2 1 4 4 H 1.48501 * 109.46932 * 180.02562 * 3 2 1 5 5 H 1.48490 * 109.47602 * 300.00226 * 3 2 1 6 6 H 1.48499 * 109.47142 * 60.00557 * 3 2 1 7 7 C 1.37874 * 119.99701 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99979 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00171 * 359.97438 * 7 2 1 10 10 H 1.08990 * 108.85239 * 333.72891 * 9 7 2 11 11 C 1.53712 * 108.88924 * 215.14818 * 9 7 2 12 12 S 1.83386 * 104.97164 * 236.52327 * 11 9 7 13 13 C 1.83985 * 95.85435 * 340.25102 * 12 11 9 14 14 H 1.09003 * 111.13325 * 277.40074 * 13 12 11 15 15 C 1.50697 * 111.13484 * 153.26183 * 13 12 11 16 16 C 1.38175 * 120.02745 * 340.19374 * 15 13 12 17 17 C 1.38241 * 120.05565 * 180.25702 * 16 15 13 18 18 C 1.38294 * 120.11106 * 359.76176 * 17 16 15 19 19 C 1.38116 * 120.05391 * 359.95791 * 18 17 16 20 20 C 1.38709 * 120.03276 * 159.91745 * 15 13 12 21 21 O 1.35908 * 120.05087 * 359.97438 * 20 15 13 22 22 C 1.52979 * 108.79324 * 92.19986 * 9 7 2 23 23 H 1.09000 * 109.65253 * 270.71686 * 22 9 7 24 24 N 1.46900 * 109.58001 * 30.86761 * 22 9 7 25 25 H 0.97002 * 119.99904 * 359.97438 * 1 2 3 26 26 H 1.09002 * 110.33648 * 117.64494 * 11 9 7 27 27 H 1.09001 * 110.33626 * 355.39930 * 11 9 7 28 28 H 1.07999 * 119.97323 * 359.97438 * 16 15 13 29 29 H 1.07999 * 119.94443 * 179.74516 * 17 16 15 30 30 H 1.08004 * 119.97103 * 179.97438 * 18 17 16 31 31 H 1.08010 * 120.02783 * 180.02562 * 19 18 17 32 32 H 0.96702 * 113.99544 * 269.72819 * 21 20 15 33 33 H 1.00900 * 111.00619 * 174.51033 * 24 22 9 34 34 H 1.00897 * 111.00332 * 298.46837 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.2741 -2.3418 0.4564 11 6 2.0323 -3.5249 0.8362 12 16 2.3230 -4.9375 -0.2966 13 6 0.9871 -4.5032 -1.4848 14 1 0.0192 -4.8642 -1.1370 15 6 1.2949 -5.0271 -2.8638 16 6 2.5927 -5.3575 -3.2041 17 6 2.8766 -5.8331 -4.4707 18 6 1.8623 -5.9842 -5.3986 19 6 0.5626 -5.6608 -5.0614 20 6 0.2749 -5.1835 -3.7907 21 8 -1.0033 -4.8650 -3.4563 22 6 1.0522 -2.9534 -1.4477 23 1 0.1225 -2.5390 -1.8376 24 7 2.1776 -2.4877 -2.2689 25 1 -0.4850 0.8401 0.0004 26 1 1.4407 -3.8430 1.6946 27 1 2.9813 -3.1014 1.1651 28 1 3.3867 -5.2397 -2.4815 29 1 3.8922 -6.0869 -4.7361 30 1 2.0867 -6.3556 -6.3876 31 1 -0.2293 -5.7793 -5.7862 32 1 -1.5059 -5.6001 -3.0793 33 1 2.1144 -2.8505 -3.2083 34 1 2.2295 -1.4801 -2.2733 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259787718.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:13 Heat of formation + Delta-G solvation = -36.747870 kcal Electronic energy + Delta-G solvation = -18217.583443 eV Core-core repulsion = 15433.517511 eV Total energy + Delta-G solvation = -2784.065932 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.90216 -38.24522 -37.50454 -34.66926 -32.80882 -31.69387 -30.75587 -28.46782 -27.03671 -24.68111 -23.49724 -22.37509 -20.53300 -19.24532 -18.46512 -17.76563 -16.98522 -16.82302 -16.53030 -16.05035 -15.93220 -15.54045 -14.84000 -14.73049 -14.50471 -13.99120 -13.55726 -13.11278 -12.96489 -12.91698 -12.83746 -12.61699 -12.49720 -12.36721 -12.07668 -11.67986 -11.36115 -11.11834 -10.65604 -10.50900 -9.70420 -9.49732 -9.16912 -8.39105 -8.16212 -6.21695 0.30810 0.45077 1.12506 1.38704 1.43417 1.53941 1.58094 2.42035 2.77725 3.16146 3.35195 3.68122 3.84349 4.06923 4.15853 4.26475 4.38945 4.42387 4.51708 4.58554 4.71243 4.81457 4.95756 4.97839 5.16955 5.43275 5.49175 5.54088 5.61726 5.68067 5.74941 6.01120 6.19895 6.61915 6.82847 6.85954 6.97166 7.42637 8.92969 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.024202 B = 0.006603 C = 0.006211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.647377 B = 4239.784054 C = 4507.263767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.011 3.989 3 Si 0.954 3.046 4 H -0.265 1.265 5 H -0.284 1.284 6 H -0.286 1.286 7 C -0.486 4.486 8 H 0.058 0.942 9 C 0.030 3.970 10 H 0.026 0.974 11 C -0.044 4.044 12 S -0.291 6.291 13 C 0.018 3.982 14 H 0.090 0.910 15 C -0.103 4.103 16 C -0.088 4.088 17 C -0.131 4.131 18 C -0.099 4.099 19 C -0.152 4.152 20 C 0.097 3.903 21 O -0.511 6.511 22 C 0.127 3.873 23 H 0.004 0.996 24 N -0.811 5.811 25 H 0.260 0.740 26 H 0.073 0.927 27 H 0.083 0.917 28 H 0.130 0.870 29 H 0.147 0.853 30 H 0.157 0.843 31 H 0.145 0.855 32 H 0.403 0.597 33 H 0.320 0.680 34 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.771 -12.046 -9.290 15.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.187 4.187 3 Si 0.781 3.219 4 H -0.189 1.189 5 H -0.210 1.210 6 H -0.212 1.212 7 C -0.525 4.525 8 H 0.076 0.924 9 C 0.010 3.990 10 H 0.045 0.955 11 C -0.192 4.192 12 S -0.062 6.062 13 C -0.111 4.111 14 H 0.108 0.892 15 C -0.105 4.105 16 C -0.107 4.107 17 C -0.149 4.149 18 C -0.117 4.117 19 C -0.171 4.171 20 C 0.051 3.949 21 O -0.323 6.323 22 C 0.014 3.986 23 H 0.022 0.978 24 N -0.343 5.343 25 H 0.069 0.931 26 H 0.091 0.909 27 H 0.102 0.898 28 H 0.148 0.852 29 H 0.165 0.835 30 H 0.175 0.825 31 H 0.163 0.837 32 H 0.262 0.738 33 H 0.132 0.868 34 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 3.047 -12.669 -8.870 15.763 hybrid contribution -1.775 2.224 0.042 2.846 sum 1.272 -10.446 -8.828 13.735 Atomic orbital electron populations 1.70065 1.07361 1.27249 1.52196 1.25731 0.95474 1.02381 0.95125 0.85546 0.79287 0.79847 0.77238 1.18898 1.21047 1.21179 1.21159 0.92843 0.89948 1.48556 0.92368 1.19306 0.95821 0.93875 0.90014 0.95520 1.24065 1.03157 0.93932 0.98088 1.86770 1.50436 1.39164 1.29818 1.22880 0.97528 0.97244 0.93447 0.89160 1.19684 0.94962 1.02273 0.93563 1.21291 0.95367 0.96351 0.97668 1.21467 1.00847 0.99905 0.92681 1.21389 0.91502 0.98322 1.00528 1.21570 0.98884 1.00948 0.95651 1.18507 0.84054 0.99117 0.93242 1.84837 1.21841 1.41329 1.84299 1.21785 0.90936 0.89557 0.96362 0.97829 1.58783 1.45454 1.15571 1.14442 0.93082 0.90854 0.89820 0.85198 0.83477 0.82510 0.83691 0.73842 0.86769 0.84239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.13 12.79 21.45 0.27 -52.86 16 2 C 0.01 0.60 5.46 84.65 0.46 1.06 16 3 Si 0.95 42.94 29.54 68.60 2.03 44.96 16 4 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 6 H -0.29 -12.81 7.11 99.48 0.71 -12.11 16 7 C -0.49 -25.40 5.93 25.60 0.15 -25.25 16 8 H 0.06 3.09 7.67 -2.91 -0.02 3.07 16 9 C 0.03 1.48 2.64 -11.31 -0.03 1.45 16 10 H 0.03 1.48 7.30 -2.39 -0.02 1.47 16 11 C -0.04 -1.90 6.98 72.22 0.50 -1.40 16 12 S -0.29 -11.12 20.51 -56.49 -1.16 -12.28 16 13 C 0.02 0.68 3.13 30.59 0.10 0.78 16 14 H 0.09 3.35 7.79 -2.39 -0.02 3.34 16 15 C -0.10 -3.33 3.87 -19.77 -0.08 -3.41 16 16 C -0.09 -2.62 8.20 22.26 0.18 -2.44 16 17 C -0.13 -3.00 10.04 22.28 0.22 -2.78 16 18 C -0.10 -1.99 10.04 22.25 0.22 -1.76 16 19 C -0.15 -3.50 9.99 22.36 0.22 -3.28 16 20 C 0.10 2.80 6.68 22.50 0.15 2.95 16 21 O -0.51 -14.61 12.70 -92.51 -1.17 -15.78 16 22 C 0.13 5.71 3.31 45.65 0.15 5.86 16 23 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 24 N -0.81 -34.28 8.23 -165.64 -1.36 -35.65 16 25 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 26 H 0.07 2.95 8.14 -2.39 -0.02 2.93 16 27 H 0.08 3.66 7.54 -2.39 -0.02 3.64 16 28 H 0.13 4.29 6.41 -2.91 -0.02 4.27 16 29 H 0.15 2.58 8.06 -2.91 -0.02 2.56 16 30 H 0.16 2.02 8.06 -2.91 -0.02 2.00 16 31 H 0.15 2.68 8.06 -2.91 -0.02 2.65 16 32 H 0.40 7.57 9.06 -74.06 -0.67 6.89 16 33 H 0.32 12.44 6.95 -89.69 -0.62 11.82 16 34 H 0.34 15.66 7.50 -89.70 -0.67 14.99 16 Total: -1.00 -61.50 290.34 0.04 -61.45 By element: Atomic # 1 Polarization: 39.19 SS G_CDS: -0.82 Total: 38.37 kcal Atomic # 6 Polarization: -30.49 SS G_CDS: 2.26 Total: -28.23 kcal Atomic # 7 Polarization: -87.42 SS G_CDS: -1.09 Total: -88.50 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: -1.17 Total: -15.78 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.96 kcal Atomic # 16 Polarization: -11.12 SS G_CDS: -1.16 Total: -12.28 kcal Total: -61.50 0.04 -61.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259787718.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.707 kcal (2) G-P(sol) polarization free energy of solvation -61.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds