Wall clock time and date at job start Mon Mar 30 2020 06:42:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99889 * 2 1 4 4 H 1.48502 * 109.47292 * 240.00343 * 3 2 1 5 5 H 1.48507 * 109.47051 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47215 * 120.00234 * 3 2 1 7 7 C 1.37878 * 120.00283 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00116 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99721 * 359.97438 * 7 2 1 10 10 H 1.08994 * 108.83160 * 57.07873 * 9 7 2 11 11 C 1.54262 * 108.86874 * 298.54669 * 9 7 2 12 12 S 1.83953 * 102.57904 * 263.71048 * 11 9 7 13 13 C 1.83949 * 94.81027 * 325.50765 * 12 11 9 14 14 H 1.09006 * 110.78529 * 276.03198 * 13 12 11 15 15 C 1.50699 * 110.79174 * 152.76797 * 13 12 11 16 16 C 1.38171 * 120.02521 * 336.45552 * 15 13 12 17 17 C 1.38244 * 120.05436 * 180.27947 * 16 15 13 18 18 C 1.38293 * 120.11190 * 359.48377 * 17 16 15 19 19 C 1.38125 * 120.05080 * 0.51384 * 18 17 16 20 20 C 1.38706 * 120.03061 * 156.47318 * 15 13 12 21 21 O 1.35900 * 120.05761 * 0.02562 * 20 15 13 22 22 C 1.52337 * 108.86839 * 175.47174 * 9 7 2 23 23 H 1.09004 * 108.86395 * 359.97438 * 22 9 7 24 24 N 1.46891 * 108.86745 * 241.63921 * 22 9 7 25 25 H 0.96992 * 120.00570 * 359.97438 * 1 2 3 26 26 H 1.08994 * 110.78620 * 145.44135 * 11 9 7 27 27 H 1.08995 * 110.78674 * 21.98303 * 11 9 7 28 28 H 1.08002 * 119.96962 * 359.97438 * 16 15 13 29 29 H 1.08001 * 119.94456 * 179.72259 * 17 16 15 30 30 H 1.07993 * 119.97129 * 180.23595 * 18 17 16 31 31 H 1.08006 * 120.02426 * 179.76910 * 19 18 17 32 32 H 0.96698 * 114.00174 * 89.99595 * 21 20 15 33 33 H 1.00898 * 111.00298 * 175.46367 * 24 22 9 34 34 H 1.00900 * 111.00399 * 299.42180 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.5893 -2.5233 -0.8662 11 6 0.3980 -2.5827 1.2820 12 16 1.4677 -3.5648 2.4113 13 6 2.1727 -4.6185 1.0785 14 1 1.5108 -5.4557 0.8564 15 6 3.5460 -5.1109 1.4560 16 6 4.3003 -4.4143 2.3805 17 6 5.5626 -4.8622 2.7229 18 6 6.0693 -6.0141 2.1493 19 6 5.3191 -6.7140 1.2245 20 6 4.0541 -6.2635 0.8752 21 8 3.3145 -6.9500 -0.0351 22 6 2.2492 -3.6443 -0.1150 23 1 3.2561 -3.2302 -0.1684 24 7 1.9796 -4.3875 -1.3530 25 1 -0.4850 0.8399 0.0004 26 1 -0.5405 -3.1022 1.0892 27 1 0.2146 -1.5888 1.6900 28 1 3.9054 -3.5164 2.8324 29 1 6.1524 -4.3139 3.4425 30 1 7.0541 -6.3640 2.4212 31 1 5.7167 -7.6115 0.7740 32 1 3.4526 -6.6657 -0.9489 33 1 2.6692 -5.1095 -1.4989 34 1 1.0474 -4.7736 -1.3473 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259787719.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:14 Heat of formation + Delta-G solvation = -18.986714 kcal Electronic energy + Delta-G solvation = -18137.988837 eV Core-core repulsion = 15354.693087 eV Total energy + Delta-G solvation = -2783.295750 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.88875 -36.73676 -36.59276 -33.21038 -31.57501 -30.06611 -29.74946 -26.65475 -25.40611 -23.20376 -22.46405 -21.28194 -19.18870 -18.22159 -16.96740 -16.33575 -15.89091 -15.31789 -15.02133 -14.71456 -14.39621 -14.20730 -13.74031 -13.42794 -12.90658 -12.47770 -12.23276 -11.94447 -11.84219 -11.55327 -11.25718 -10.96051 -10.81444 -10.65242 -10.30900 -10.24754 -9.87700 -9.29147 -9.12696 -8.79049 -8.60616 -8.37513 -7.98184 -6.85516 -6.10755 -4.14034 1.29623 1.44428 2.61240 3.28076 3.32409 3.34500 3.37477 3.72686 4.25486 4.38240 4.80318 5.02486 5.09548 5.17275 5.26148 5.40242 5.49138 5.57609 5.73986 5.91922 6.11186 6.20090 6.37366 6.43101 6.52069 6.59942 6.66854 6.78628 6.93242 7.30403 7.42676 7.63405 7.79941 7.84189 7.91235 8.25884 8.85843 9.49716 10.97558 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.023829 B = 0.006642 C = 0.006231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.754461 B = 4214.408402 C = 4492.326367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.498 4.498 8 H 0.058 0.942 9 C 0.046 3.954 10 H 0.055 0.945 11 C -0.025 4.025 12 S -0.327 6.327 13 C -0.031 4.031 14 H 0.093 0.907 15 C -0.080 4.080 16 C -0.087 4.087 17 C -0.127 4.127 18 C -0.113 4.113 19 C -0.148 4.148 20 C 0.104 3.896 21 O -0.497 6.497 22 C 0.108 3.892 23 H 0.087 0.913 24 N -0.828 5.828 25 H 0.263 0.737 26 H 0.053 0.947 27 H 0.119 0.881 28 H 0.147 0.853 29 H 0.124 0.876 30 H 0.122 0.878 31 H 0.125 0.875 32 H 0.383 0.617 33 H 0.318 0.682 34 H 0.336 0.664 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.722 -10.829 1.580 13.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.141 4.141 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.537 4.537 8 H 0.076 0.924 9 C 0.026 3.974 10 H 0.073 0.927 11 C -0.173 4.173 12 S -0.100 6.100 13 C -0.162 4.162 14 H 0.112 0.888 15 C -0.082 4.082 16 C -0.106 4.106 17 C -0.146 4.146 18 C -0.131 4.131 19 C -0.167 4.167 20 C 0.058 3.942 21 O -0.307 6.307 22 C -0.005 4.005 23 H 0.105 0.895 24 N -0.358 5.358 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.137 0.863 28 H 0.165 0.835 29 H 0.142 0.858 30 H 0.140 0.860 31 H 0.143 0.857 32 H 0.239 0.761 33 H 0.130 0.870 34 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 7.594 -10.229 2.903 13.066 hybrid contribution 0.259 0.238 -0.940 1.003 sum 7.854 -9.991 1.964 12.859 Atomic orbital electron populations 1.69900 1.05872 1.27002 1.50364 1.24952 0.94910 0.99224 0.95048 0.86613 0.79619 0.82880 0.78728 1.20216 1.21300 1.20142 1.21098 0.92708 0.89552 1.50293 0.92419 1.19128 0.92684 0.92111 0.93499 0.92744 1.24519 0.95980 1.00727 0.96063 1.87394 1.57953 1.45402 1.19221 1.23675 0.94595 0.99860 0.98062 0.88846 1.19856 0.95723 0.94072 0.98533 1.21436 0.93426 1.00025 0.95730 1.21207 0.95951 0.96832 1.00566 1.20991 0.99595 0.95554 0.96958 1.21286 0.93631 1.01093 1.00671 1.18252 0.90418 0.91236 0.94276 1.84822 1.66049 1.60984 1.18829 1.22520 1.02833 0.91773 0.83337 0.89496 1.59161 1.06727 1.31611 1.38267 0.92719 0.92790 0.86307 0.83519 0.85803 0.85959 0.85703 0.76056 0.87004 0.85109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.48 11.83 55.43 0.66 -23.82 16 2 C 0.06 1.60 5.03 -17.82 -0.09 1.51 16 3 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.50 -13.03 8.39 -34.44 -0.29 -13.32 16 8 H 0.06 1.52 7.20 -52.49 -0.38 1.14 16 9 C 0.05 1.07 2.31 -91.45 -0.21 0.86 16 10 H 0.05 1.40 7.77 -51.93 -0.40 1.00 16 11 C -0.02 -0.57 6.46 37.82 0.24 -0.32 16 12 S -0.33 -6.72 20.73 -107.50 -2.23 -8.95 16 13 C -0.03 -0.56 2.88 -27.23 -0.08 -0.64 16 14 H 0.09 1.67 7.57 -51.93 -0.39 1.27 16 15 C -0.08 -1.33 4.92 -104.47 -0.51 -1.84 16 16 C -0.09 -1.42 9.16 -39.60 -0.36 -1.78 16 17 C -0.13 -1.71 10.04 -39.56 -0.40 -2.11 16 18 C -0.11 -1.36 10.04 -39.60 -0.40 -1.75 16 19 C -0.15 -1.88 9.99 -39.43 -0.39 -2.27 16 20 C 0.10 1.51 6.68 -39.22 -0.26 1.25 16 21 O -0.50 -6.44 12.36 -19.42 -0.24 -6.68 16 22 C 0.11 2.10 2.96 -67.40 -0.20 1.90 16 23 H 0.09 1.86 6.78 -51.93 -0.35 1.51 16 24 N -0.83 -13.68 8.93 -4.40 -0.04 -13.71 16 25 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 26 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 27 H 0.12 3.05 6.35 -51.93 -0.33 2.72 16 28 H 0.15 2.59 6.52 -52.49 -0.34 2.25 16 29 H 0.12 1.38 8.06 -52.49 -0.42 0.95 16 30 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 31 H 0.13 1.30 8.06 -52.48 -0.42 0.88 16 32 H 0.38 3.58 7.08 45.56 0.32 3.90 16 33 H 0.32 4.24 6.70 -39.29 -0.26 3.98 16 34 H 0.34 5.24 8.95 -39.29 -0.35 4.88 16 LS Contribution 289.11 15.07 4.36 4.36 Total: -1.00 -28.46 289.11 -8.78 -37.24 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: -3.32 Total: 14.20 kcal Atomic # 6 Polarization: -15.57 SS G_CDS: -2.95 Total: -18.52 kcal Atomic # 7 Polarization: -38.15 SS G_CDS: 0.62 Total: -37.54 kcal Atomic # 8 Polarization: -6.44 SS G_CDS: -0.24 Total: -6.68 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 16 Polarization: -6.72 SS G_CDS: -2.23 Total: -8.95 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -28.46 -8.78 -37.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259787719.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.258 kcal (2) G-P(sol) polarization free energy of solvation -28.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds