Wall clock time and date at job start Mon Mar 30 2020 06:42:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99889 * 2 1 4 4 H 1.48502 * 109.47292 * 240.00343 * 3 2 1 5 5 H 1.48507 * 109.47051 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47215 * 120.00234 * 3 2 1 7 7 C 1.37878 * 120.00283 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00116 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99721 * 359.97438 * 7 2 1 10 10 H 1.08994 * 108.83160 * 57.07873 * 9 7 2 11 11 C 1.54262 * 108.86874 * 298.54669 * 9 7 2 12 12 S 1.83953 * 102.57904 * 263.71048 * 11 9 7 13 13 C 1.83949 * 94.81027 * 325.50765 * 12 11 9 14 14 H 1.09006 * 110.78529 * 276.03198 * 13 12 11 15 15 C 1.50699 * 110.79174 * 152.76797 * 13 12 11 16 16 C 1.38171 * 120.02521 * 336.45552 * 15 13 12 17 17 C 1.38244 * 120.05436 * 180.27947 * 16 15 13 18 18 C 1.38293 * 120.11190 * 359.48377 * 17 16 15 19 19 C 1.38125 * 120.05080 * 0.51384 * 18 17 16 20 20 C 1.38706 * 120.03061 * 156.47318 * 15 13 12 21 21 O 1.35900 * 120.05761 * 0.02562 * 20 15 13 22 22 C 1.52337 * 108.86839 * 175.47174 * 9 7 2 23 23 H 1.09004 * 108.86395 * 359.97438 * 22 9 7 24 24 N 1.46891 * 108.86745 * 241.63921 * 22 9 7 25 25 H 0.96992 * 120.00570 * 359.97438 * 1 2 3 26 26 H 1.08994 * 110.78620 * 145.44135 * 11 9 7 27 27 H 1.08995 * 110.78674 * 21.98303 * 11 9 7 28 28 H 1.08002 * 119.96962 * 359.97438 * 16 15 13 29 29 H 1.08001 * 119.94456 * 179.72259 * 17 16 15 30 30 H 1.07993 * 119.97129 * 180.23595 * 18 17 16 31 31 H 1.08006 * 120.02426 * 179.76910 * 19 18 17 32 32 H 0.96698 * 114.00174 * 89.99595 * 21 20 15 33 33 H 1.00898 * 111.00298 * 175.46367 * 24 22 9 34 34 H 1.00900 * 111.00399 * 299.42180 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.5893 -2.5233 -0.8662 11 6 0.3980 -2.5827 1.2820 12 16 1.4677 -3.5648 2.4113 13 6 2.1727 -4.6185 1.0785 14 1 1.5108 -5.4557 0.8564 15 6 3.5460 -5.1109 1.4560 16 6 4.3003 -4.4143 2.3805 17 6 5.5626 -4.8622 2.7229 18 6 6.0693 -6.0141 2.1493 19 6 5.3191 -6.7140 1.2245 20 6 4.0541 -6.2635 0.8752 21 8 3.3145 -6.9500 -0.0351 22 6 2.2492 -3.6443 -0.1150 23 1 3.2561 -3.2302 -0.1684 24 7 1.9796 -4.3875 -1.3530 25 1 -0.4850 0.8399 0.0004 26 1 -0.5405 -3.1022 1.0892 27 1 0.2146 -1.5888 1.6900 28 1 3.9054 -3.5164 2.8324 29 1 6.1524 -4.3139 3.4425 30 1 7.0541 -6.3640 2.4212 31 1 5.7167 -7.6115 0.7740 32 1 3.4526 -6.6657 -0.9489 33 1 2.6692 -5.1095 -1.4989 34 1 1.0474 -4.7736 -1.3473 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259787719.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:14 Heat of formation + Delta-G solvation = -38.113347 kcal Electronic energy + Delta-G solvation = -18138.818230 eV Core-core repulsion = 15354.693087 eV Total energy + Delta-G solvation = -2784.125143 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.00061 -38.33326 -37.61195 -35.03971 -32.85458 -31.83979 -30.81653 -28.03608 -27.33828 -24.84117 -23.54981 -22.56068 -20.83336 -19.27849 -18.75739 -17.80187 -17.20177 -16.67585 -16.44404 -16.12636 -15.99170 -15.69474 -14.85532 -14.84741 -14.50831 -14.10847 -13.83431 -13.26077 -13.06988 -12.95785 -12.82536 -12.59670 -12.50492 -12.39914 -12.05055 -11.68904 -11.44867 -11.11109 -10.96178 -10.44908 -9.94286 -9.69706 -9.30982 -8.51903 -8.15386 -6.24335 0.21280 0.36562 1.08326 1.41658 1.42507 1.49674 1.56303 2.42087 2.67624 3.14777 3.23743 3.54590 3.76409 3.91032 4.00940 4.12382 4.25264 4.46712 4.49222 4.55907 4.64509 4.73625 4.88480 4.96450 5.08173 5.40345 5.49284 5.53198 5.53796 5.60210 5.79345 5.90872 6.26617 6.26817 6.57846 6.78510 6.80743 7.42112 8.91943 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.023829 B = 0.006642 C = 0.006231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.754461 B = 4214.408402 C = 4492.326367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.016 3.984 3 Si 0.949 3.051 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.512 4.512 8 H 0.050 0.950 9 C 0.048 3.952 10 H 0.027 0.973 11 C -0.023 4.023 12 S -0.335 6.335 13 C -0.009 4.009 14 H 0.098 0.902 15 C -0.109 4.109 16 C -0.110 4.110 17 C -0.130 4.130 18 C -0.100 4.100 19 C -0.146 4.146 20 C 0.103 3.897 21 O -0.501 6.501 22 C 0.122 3.878 23 H 0.068 0.932 24 N -0.829 5.829 25 H 0.262 0.738 26 H 0.057 0.943 27 H 0.087 0.913 28 H 0.123 0.877 29 H 0.145 0.855 30 H 0.160 0.840 31 H 0.154 0.846 32 H 0.399 0.601 33 H 0.339 0.661 34 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.984 -12.582 1.442 16.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.183 4.183 3 Si 0.775 3.225 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.550 4.550 8 H 0.068 0.932 9 C 0.027 3.973 10 H 0.045 0.955 11 C -0.172 4.172 12 S -0.107 6.107 13 C -0.139 4.139 14 H 0.116 0.884 15 C -0.111 4.111 16 C -0.130 4.130 17 C -0.148 4.148 18 C -0.118 4.118 19 C -0.164 4.164 20 C 0.057 3.943 21 O -0.313 6.313 22 C 0.009 3.991 23 H 0.086 0.914 24 N -0.361 5.361 25 H 0.071 0.929 26 H 0.076 0.924 27 H 0.106 0.894 28 H 0.140 0.860 29 H 0.163 0.837 30 H 0.178 0.822 31 H 0.172 0.828 32 H 0.258 0.742 33 H 0.154 0.846 34 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 9.866 -11.998 2.748 15.774 hybrid contribution -0.374 0.685 -0.907 1.197 sum 9.491 -11.312 1.841 14.881 Atomic orbital electron populations 1.70010 1.06952 1.27494 1.51137 1.25628 0.95642 1.02114 0.94920 0.85743 0.78544 0.79489 0.78743 1.19735 1.20954 1.19878 1.21378 0.92548 0.91068 1.50041 0.93185 1.19059 0.92752 0.92924 0.92523 0.95527 1.24187 0.96688 0.99735 0.96557 1.87361 1.57622 1.45688 1.19995 1.23575 0.95973 0.98725 0.95662 0.88398 1.19816 0.95002 0.95849 1.00421 1.21369 0.95063 0.99799 0.96731 1.21468 0.94896 0.97583 1.00870 1.21434 1.00813 0.94206 0.95349 1.21650 0.92656 1.01789 1.00302 1.18345 0.91161 0.90422 0.94390 1.84784 1.66118 1.60666 1.19759 1.22046 1.00262 0.91481 0.85315 0.91382 1.59001 1.07922 1.32605 1.36539 0.92851 0.92421 0.89446 0.85958 0.83726 0.82209 0.82827 0.74231 0.84641 0.84267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.74 11.83 21.45 0.25 -51.48 16 2 C 0.02 0.87 5.03 84.65 0.43 1.29 16 3 Si 0.95 43.49 29.54 68.60 2.03 45.52 16 4 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 5 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 6 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 7 C -0.51 -27.56 8.39 25.60 0.21 -27.34 16 8 H 0.05 2.71 7.20 -2.92 -0.02 2.69 16 9 C 0.05 2.30 2.31 -11.33 -0.03 2.27 16 10 H 0.03 1.43 7.77 -2.39 -0.02 1.41 16 11 C -0.02 -1.10 6.46 72.41 0.47 -0.63 16 12 S -0.33 -14.04 20.73 -56.49 -1.17 -15.21 16 13 C -0.01 -0.31 2.88 30.27 0.09 -0.22 16 14 H 0.10 3.40 7.57 -2.38 -0.02 3.38 16 15 C -0.11 -3.50 4.92 -19.77 -0.10 -3.60 16 16 C -0.11 -3.53 9.16 22.26 0.20 -3.32 16 17 C -0.13 -3.18 10.04 22.28 0.22 -2.95 16 18 C -0.10 -1.99 10.04 22.26 0.22 -1.76 16 19 C -0.15 -3.10 9.99 22.37 0.22 -2.88 16 20 C 0.10 2.71 6.68 22.50 0.15 2.86 16 21 O -0.50 -11.56 12.36 -92.42 -1.14 -12.70 16 22 C 0.12 4.80 2.96 45.12 0.13 4.93 16 23 H 0.07 2.95 6.78 -2.38 -0.02 2.94 16 24 N -0.83 -26.74 8.93 -167.84 -1.50 -28.24 16 25 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 26 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 27 H 0.09 4.71 6.35 -2.39 -0.02 4.69 16 28 H 0.12 4.43 6.52 -2.91 -0.02 4.42 16 29 H 0.14 2.82 8.06 -2.91 -0.02 2.80 16 30 H 0.16 2.00 8.06 -2.91 -0.02 1.98 16 31 H 0.15 2.40 8.06 -2.91 -0.02 2.37 16 32 H 0.40 6.24 7.08 -74.06 -0.52 5.72 16 33 H 0.34 8.44 6.70 -89.70 -0.60 7.84 16 34 H 0.34 10.43 8.95 -89.69 -0.80 9.63 16 Total: -1.00 -62.69 289.11 -0.08 -62.76 By element: Atomic # 1 Polarization: 31.49 SS G_CDS: -0.77 Total: 30.71 kcal Atomic # 6 Polarization: -33.59 SS G_CDS: 2.23 Total: -31.36 kcal Atomic # 7 Polarization: -78.48 SS G_CDS: -1.25 Total: -79.73 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: -1.14 Total: -12.70 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Atomic # 16 Polarization: -14.04 SS G_CDS: -1.17 Total: -15.21 kcal Total: -62.69 -0.08 -62.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259787719.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.651 kcal (2) G-P(sol) polarization free energy of solvation -62.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds