Wall clock time and date at job start Mon Mar 30 2020 06:42:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.60517 * 58.86615 * 9 7 2 11 11 C 1.55156 * 109.60164 * 298.54096 * 9 7 2 12 12 S 1.83993 * 100.91037 * 198.63337 * 11 9 7 13 13 C 1.83400 * 95.85066 * 35.34961 * 12 11 9 14 14 H 1.09000 * 110.33874 * 99.12801 * 13 12 11 15 15 C 1.50698 * 110.33867 * 221.37636 * 13 12 11 16 16 C 1.38165 * 120.02766 * 213.27095 * 15 13 12 17 17 C 1.38242 * 120.05508 * 179.79747 * 16 15 13 18 18 C 1.38287 * 120.11060 * 0.46260 * 17 16 15 19 19 C 1.38116 * 120.05956 * 359.79101 * 18 17 16 20 20 C 1.38709 * 120.02573 * 33.55443 * 15 13 12 21 21 O 1.35899 * 120.05907 * 359.94643 * 20 15 13 22 22 C 1.52938 * 109.60531 * 179.00888 * 9 7 2 23 23 H 1.09006 * 108.88873 * 29.23141 * 22 9 7 24 24 N 1.46908 * 108.88564 * 270.82402 * 22 9 7 25 25 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 26 26 H 1.09004 * 111.13228 * 316.54025 * 11 9 7 27 27 H 1.09000 * 111.12960 * 80.67384 * 11 9 7 28 28 H 1.08000 * 119.96960 * 0.02562 * 16 15 13 29 29 H 1.08006 * 119.94325 * 180.25299 * 17 16 15 30 30 H 1.08005 * 119.96793 * 179.77346 * 18 17 16 31 31 H 1.07994 * 120.03389 * 180.02562 * 19 18 17 32 32 H 0.96698 * 113.99679 * 90.00747 * 21 20 15 33 33 H 1.00897 * 111.00077 * 179.97438 * 24 22 9 34 34 H 1.00894 * 110.99864 * 303.94922 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6088 -2.5506 -0.8786 11 6 0.3855 -2.6005 1.2842 12 16 0.0619 -4.4107 1.3440 13 6 1.6967 -4.9149 0.6832 14 1 2.3596 -5.2097 1.4967 15 6 1.5380 -6.0453 -0.3006 16 6 2.5186 -7.0129 -0.4061 17 6 2.3717 -8.0525 -1.3054 18 6 1.2480 -8.1215 -2.1084 19 6 0.2673 -7.1539 -2.0106 20 6 0.4101 -6.1120 -1.1053 21 8 -0.5536 -5.1590 -1.0068 22 6 2.2421 -3.6638 -0.0237 23 1 3.1635 -3.3534 0.4691 24 7 2.5451 -4.0012 -1.4211 25 1 -0.4850 -0.8401 -0.0004 26 1 0.9433 -2.2719 2.1612 27 1 -0.5420 -2.0380 1.1781 28 1 3.3989 -6.9591 0.2173 29 1 3.1375 -8.8101 -1.3834 30 1 1.1373 -8.9327 -2.8128 31 1 -0.6103 -7.2085 -2.6375 32 1 -0.4209 -4.4032 -1.5952 33 1 3.1987 -4.7681 -1.4743 34 1 1.7015 -4.2085 -1.9341 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259787722.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:16 Heat of formation + Delta-G solvation = -8.146800 kcal Electronic energy + Delta-G solvation = -18490.675657 eV Core-core repulsion = 15707.849961 eV Total energy + Delta-G solvation = -2782.825696 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.07666 -36.82514 -36.30355 -33.61835 -31.21981 -29.90040 -29.70683 -26.88973 -25.31316 -22.93354 -22.52594 -21.38923 -19.29363 -18.15074 -17.36372 -16.22221 -15.89201 -15.24706 -14.95128 -14.83310 -14.32171 -13.99281 -13.78547 -13.63398 -13.18345 -12.55997 -12.26453 -11.84163 -11.78611 -11.55652 -11.36800 -10.98631 -10.83723 -10.67811 -10.28280 -10.09851 -9.88422 -9.61389 -8.82317 -8.57046 -8.39903 -8.37182 -8.11965 -6.61662 -6.39839 -4.15349 1.24316 1.31869 2.57078 3.17296 3.41713 3.43971 3.61705 3.67864 4.47400 4.48256 4.68084 4.91643 4.99012 5.08053 5.30940 5.33675 5.38090 5.50937 5.59236 5.86479 5.94092 6.04419 6.29183 6.34572 6.37588 6.38838 6.45902 6.56761 6.83782 6.89790 7.26676 7.66809 7.85975 8.02055 8.05989 8.35700 8.77286 9.53403 10.94466 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.032318 B = 0.006352 C = 0.006031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.185063 B = 4407.098136 C = 4641.581393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.021 3.979 3 Si 1.069 2.931 4 H -0.283 1.283 5 H -0.287 1.287 6 H -0.288 1.288 7 C -0.579 4.579 8 H 0.054 0.946 9 C 0.050 3.950 10 H 0.034 0.966 11 C -0.055 4.055 12 S -0.295 6.295 13 C -0.042 4.042 14 H 0.089 0.911 15 C -0.094 4.094 16 C -0.102 4.102 17 C -0.133 4.133 18 C -0.108 4.108 19 C -0.152 4.152 20 C 0.129 3.871 21 O -0.462 6.462 22 C 0.107 3.893 23 H 0.083 0.917 24 N -0.821 5.821 25 H 0.271 0.729 26 H 0.075 0.925 27 H 0.102 0.898 28 H 0.123 0.877 29 H 0.122 0.878 30 H 0.122 0.878 31 H 0.127 0.873 32 H 0.378 0.622 33 H 0.329 0.671 34 H 0.327 0.673 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.508 -13.154 -2.832 13.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.183 4.183 3 Si 0.897 3.103 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.215 1.215 7 C -0.619 4.619 8 H 0.072 0.928 9 C 0.030 3.970 10 H 0.052 0.948 11 C -0.204 4.204 12 S -0.064 6.064 13 C -0.173 4.173 14 H 0.108 0.892 15 C -0.096 4.096 16 C -0.122 4.122 17 C -0.151 4.151 18 C -0.127 4.127 19 C -0.170 4.170 20 C 0.082 3.918 21 O -0.273 6.273 22 C -0.005 4.005 23 H 0.101 0.899 24 N -0.349 5.349 25 H 0.084 0.916 26 H 0.094 0.906 27 H 0.120 0.880 28 H 0.141 0.859 29 H 0.140 0.860 30 H 0.140 0.860 31 H 0.145 0.855 32 H 0.237 0.763 33 H 0.142 0.858 34 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 2.358 -11.731 -2.067 12.143 hybrid contribution 0.973 -1.775 -0.338 2.052 sum 3.331 -13.506 -2.404 14.117 Atomic orbital electron populations 1.70871 1.06847 1.30883 1.46121 1.25814 0.96472 1.02636 0.93426 0.83530 0.74894 0.75298 0.76578 1.20833 1.21390 1.21483 1.21860 0.94174 0.90333 1.55520 0.92765 1.19537 0.92121 0.93306 0.92080 0.94838 1.25041 1.03952 0.88230 1.03177 1.87558 1.22444 1.12287 1.84159 1.23564 0.97523 0.97442 0.98788 0.89245 1.19986 0.94463 0.96671 0.98510 1.20931 0.98402 0.93926 0.98950 1.21043 0.98359 0.98614 0.97123 1.20995 0.93962 0.98488 0.99249 1.21538 1.00028 0.96109 0.99373 1.18420 0.88008 0.91421 0.93953 1.85410 1.45819 1.31765 1.64330 1.22185 1.00368 0.90442 0.87551 0.89897 1.58887 1.17391 1.46367 1.12291 0.91604 0.90603 0.88014 0.85876 0.86005 0.86007 0.85528 0.76349 0.85821 0.85944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.80 13.36 55.43 0.74 -25.05 16 2 C 0.02 0.57 5.31 -17.82 -0.09 0.48 16 3 Si 1.07 24.29 29.90 -169.99 -5.08 19.21 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.58 -15.16 8.43 -34.44 -0.29 -15.45 16 8 H 0.05 1.45 7.53 -52.48 -0.40 1.05 16 9 C 0.05 1.14 1.77 -90.66 -0.16 0.98 16 10 H 0.03 0.82 7.03 -51.93 -0.37 0.45 16 11 C -0.06 -1.24 6.13 38.30 0.23 -1.00 16 12 S -0.30 -5.88 19.41 -107.50 -2.09 -7.97 16 13 C -0.04 -0.74 3.46 -27.52 -0.10 -0.83 16 14 H 0.09 1.51 8.08 -51.93 -0.42 1.09 16 15 C -0.09 -1.44 3.35 -104.48 -0.35 -1.79 16 16 C -0.10 -1.32 8.94 -39.61 -0.35 -1.67 16 17 C -0.13 -1.49 10.04 -39.56 -0.40 -1.89 16 18 C -0.11 -1.22 10.04 -39.61 -0.40 -1.62 16 19 C -0.15 -1.97 9.99 -39.43 -0.39 -2.37 16 20 C 0.13 1.98 5.21 -39.21 -0.20 1.77 16 21 O -0.46 -7.73 10.08 -19.42 -0.20 -7.93 16 22 C 0.11 2.08 3.21 -67.37 -0.22 1.86 16 23 H 0.08 1.71 7.62 -51.93 -0.40 1.32 16 24 N -0.82 -14.41 8.57 -4.38 -0.04 -14.44 16 25 H 0.27 7.54 5.15 -40.82 -0.21 7.33 16 26 H 0.08 1.75 8.10 -51.93 -0.42 1.33 16 27 H 0.10 2.44 6.13 -51.93 -0.32 2.12 16 28 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 29 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 30 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 31 H 0.13 1.46 8.06 -52.49 -0.42 1.03 16 32 H 0.38 5.80 7.70 45.56 0.35 6.15 16 33 H 0.33 5.09 7.47 -39.29 -0.29 4.80 16 34 H 0.33 5.53 6.20 -39.29 -0.24 5.29 16 LS Contribution 281.78 15.07 4.25 4.25 Total: -1.00 -28.90 281.78 -8.33 -37.23 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: -3.20 Total: 16.25 kcal Atomic # 6 Polarization: -18.82 SS G_CDS: -2.72 Total: -21.54 kcal Atomic # 7 Polarization: -40.20 SS G_CDS: 0.70 Total: -39.50 kcal Atomic # 8 Polarization: -7.73 SS G_CDS: -0.20 Total: -7.93 kcal Atomic # 14 Polarization: 24.29 SS G_CDS: -5.08 Total: 19.21 kcal Atomic # 16 Polarization: -5.88 SS G_CDS: -2.09 Total: -7.97 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -28.90 -8.33 -37.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259787722.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.086 kcal (2) G-P(sol) polarization free energy of solvation -28.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds