Wall clock time and date at job start Mon Mar 30 2020 06:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.60517 * 58.86615 * 9 7 2 11 11 C 1.55156 * 109.60164 * 298.54096 * 9 7 2 12 12 S 1.83993 * 100.91037 * 198.63337 * 11 9 7 13 13 C 1.83400 * 95.85066 * 35.34961 * 12 11 9 14 14 H 1.09000 * 110.33874 * 99.12801 * 13 12 11 15 15 C 1.50698 * 110.33867 * 221.37636 * 13 12 11 16 16 C 1.38165 * 120.02766 * 213.27095 * 15 13 12 17 17 C 1.38242 * 120.05508 * 179.79747 * 16 15 13 18 18 C 1.38287 * 120.11060 * 0.46260 * 17 16 15 19 19 C 1.38116 * 120.05956 * 359.79101 * 18 17 16 20 20 C 1.38709 * 120.02573 * 33.55443 * 15 13 12 21 21 O 1.35899 * 120.05907 * 359.94643 * 20 15 13 22 22 C 1.52938 * 109.60531 * 179.00888 * 9 7 2 23 23 H 1.09006 * 108.88873 * 29.23141 * 22 9 7 24 24 N 1.46908 * 108.88564 * 270.82402 * 22 9 7 25 25 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 26 26 H 1.09004 * 111.13228 * 316.54025 * 11 9 7 27 27 H 1.09000 * 111.12960 * 80.67384 * 11 9 7 28 28 H 1.08000 * 119.96960 * 0.02562 * 16 15 13 29 29 H 1.08006 * 119.94325 * 180.25299 * 17 16 15 30 30 H 1.08005 * 119.96793 * 179.77346 * 18 17 16 31 31 H 1.07994 * 120.03389 * 180.02562 * 19 18 17 32 32 H 0.96698 * 113.99679 * 90.00747 * 21 20 15 33 33 H 1.00897 * 111.00077 * 179.97438 * 24 22 9 34 34 H 1.00894 * 110.99864 * 303.94922 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6088 -2.5506 -0.8786 11 6 0.3855 -2.6005 1.2842 12 16 0.0619 -4.4107 1.3440 13 6 1.6967 -4.9149 0.6832 14 1 2.3596 -5.2097 1.4967 15 6 1.5380 -6.0453 -0.3006 16 6 2.5186 -7.0129 -0.4061 17 6 2.3717 -8.0525 -1.3054 18 6 1.2480 -8.1215 -2.1084 19 6 0.2673 -7.1539 -2.0106 20 6 0.4101 -6.1120 -1.1053 21 8 -0.5536 -5.1590 -1.0068 22 6 2.2421 -3.6638 -0.0237 23 1 3.1635 -3.3534 0.4691 24 7 2.5451 -4.0012 -1.4211 25 1 -0.4850 -0.8401 -0.0004 26 1 0.9433 -2.2719 2.1612 27 1 -0.5420 -2.0380 1.1781 28 1 3.3989 -6.9591 0.2173 29 1 3.1375 -8.8101 -1.3834 30 1 1.1373 -8.9327 -2.8128 31 1 -0.6103 -7.2085 -2.6375 32 1 -0.4209 -4.4032 -1.5952 33 1 3.1987 -4.7681 -1.4743 34 1 1.7015 -4.2085 -1.9341 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259787722.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:15 Heat of formation + Delta-G solvation = -27.197432 kcal Electronic energy + Delta-G solvation = -18491.501755 eV Core-core repulsion = 15707.849961 eV Total energy + Delta-G solvation = -2783.651794 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.21282 -38.37615 -37.44381 -35.38672 -32.52868 -31.59721 -30.74636 -28.24244 -27.29082 -24.47443 -23.57976 -22.77104 -20.83401 -19.59365 -18.93557 -17.47051 -17.26172 -16.46460 -16.39022 -16.18665 -15.91268 -15.62881 -15.31307 -14.82678 -14.45601 -14.08069 -13.65847 -13.37673 -13.22991 -12.91041 -12.79107 -12.67516 -12.44600 -12.18585 -11.92386 -11.69528 -11.43408 -11.30174 -10.55080 -10.31813 -9.83281 -9.58667 -9.46448 -8.54467 -8.18745 -6.29247 0.18861 0.33461 1.06646 1.47388 1.56882 1.64111 1.82128 2.59216 2.68053 3.19234 3.37425 3.46867 3.73488 3.83053 3.94521 4.07748 4.19314 4.29157 4.47650 4.52607 4.54219 4.59909 4.69126 4.87603 4.99873 5.09442 5.41048 5.42773 5.51662 5.52851 5.90506 6.02824 6.20047 6.23301 6.54156 6.66882 6.85528 7.46748 8.82014 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.032318 B = 0.006352 C = 0.006031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.185063 B = 4407.098136 C = 4641.581393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.025 4.025 3 Si 1.111 2.889 4 H -0.288 1.288 5 H -0.275 1.275 6 H -0.273 1.273 7 C -0.589 4.589 8 H 0.046 0.954 9 C 0.054 3.946 10 H 0.014 0.986 11 C -0.052 4.052 12 S -0.295 6.295 13 C -0.027 4.027 14 H 0.099 0.901 15 C -0.116 4.116 16 C -0.103 4.103 17 C -0.125 4.125 18 C -0.099 4.099 19 C -0.158 4.158 20 C 0.105 3.895 21 O -0.481 6.481 22 C 0.118 3.882 23 H 0.070 0.930 24 N -0.822 5.822 25 H 0.263 0.737 26 H 0.062 0.938 27 H 0.079 0.921 28 H 0.140 0.860 29 H 0.157 0.843 30 H 0.155 0.845 31 H 0.137 0.863 32 H 0.378 0.622 33 H 0.344 0.656 34 H 0.332 0.668 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.150 -15.446 -3.667 16.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.224 4.224 3 Si 0.934 3.066 4 H -0.213 1.213 5 H -0.201 1.201 6 H -0.198 1.198 7 C -0.628 4.628 8 H 0.064 0.936 9 C 0.033 3.967 10 H 0.032 0.968 11 C -0.201 4.201 12 S -0.064 6.064 13 C -0.158 4.158 14 H 0.117 0.883 15 C -0.118 4.118 16 C -0.122 4.122 17 C -0.142 4.142 18 C -0.117 4.117 19 C -0.176 4.176 20 C 0.058 3.942 21 O -0.292 6.292 22 C 0.004 3.996 23 H 0.088 0.912 24 N -0.352 5.352 25 H 0.075 0.925 26 H 0.080 0.920 27 H 0.097 0.903 28 H 0.157 0.843 29 H 0.174 0.826 30 H 0.173 0.827 31 H 0.155 0.845 32 H 0.236 0.764 33 H 0.158 0.842 34 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 4.016 -14.060 -2.904 14.907 hybrid contribution 0.492 -1.229 -0.134 1.331 sum 4.508 -15.288 -3.039 16.226 Atomic orbital electron populations 1.70955 1.07725 1.30587 1.48216 1.27035 0.96558 1.05932 0.92877 0.82984 0.74128 0.71890 0.77615 1.21326 1.20069 1.19849 1.22171 0.94003 0.91964 1.54674 0.93560 1.19414 0.92267 0.93687 0.91321 0.96760 1.24648 1.02603 0.90479 1.02337 1.87518 1.24907 1.09362 1.84660 1.23516 0.95387 0.97507 0.99422 0.88289 1.19870 0.95901 0.97075 0.98965 1.21174 0.98114 0.93528 0.99430 1.21453 0.98894 0.98305 0.95597 1.21426 0.92945 0.98288 0.99043 1.21725 1.01108 0.95838 0.98975 1.18676 0.88178 0.91974 0.95356 1.85362 1.46721 1.32296 1.64805 1.21819 0.98585 0.90311 0.88863 0.91179 1.58806 1.18018 1.47294 1.11105 0.92460 0.91963 0.90294 0.84256 0.82575 0.82709 0.84497 0.76449 0.84165 0.85431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.78 13.36 21.45 0.29 -54.49 16 2 C -0.02 -1.36 5.31 84.65 0.45 -0.91 16 3 Si 1.11 49.29 29.90 68.60 2.05 51.34 16 4 H -0.29 -12.90 7.11 99.48 0.71 -12.20 16 5 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 6 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 7 C -0.59 -31.49 8.43 25.60 0.22 -31.28 16 8 H 0.05 2.50 7.53 -2.91 -0.02 2.48 16 9 C 0.05 2.52 1.77 -10.82 -0.02 2.50 16 10 H 0.01 0.73 7.03 -2.39 -0.02 0.71 16 11 C -0.05 -2.41 6.13 72.72 0.45 -1.97 16 12 S -0.29 -11.93 19.41 -56.49 -1.10 -13.03 16 13 C -0.03 -0.94 3.46 30.08 0.10 -0.84 16 14 H 0.10 3.20 8.08 -2.39 -0.02 3.18 16 15 C -0.12 -3.35 3.35 -19.77 -0.07 -3.41 16 16 C -0.10 -2.30 8.94 22.25 0.20 -2.10 16 17 C -0.12 -2.20 10.04 22.28 0.22 -1.98 16 18 C -0.10 -1.79 10.04 22.25 0.22 -1.57 16 19 C -0.16 -3.71 9.99 22.37 0.22 -3.49 16 20 C 0.10 3.08 5.21 22.51 0.12 3.20 16 21 O -0.48 -16.30 10.08 -92.41 -0.93 -17.23 16 22 C 0.12 4.55 3.21 45.13 0.15 4.70 16 23 H 0.07 2.89 7.62 -2.38 -0.02 2.87 16 24 N -0.82 -28.24 8.57 -167.76 -1.44 -29.68 16 25 H 0.26 15.37 5.15 -92.71 -0.48 14.89 16 26 H 0.06 3.00 8.10 -2.39 -0.02 2.98 16 27 H 0.08 4.02 6.13 -2.39 -0.01 4.01 16 28 H 0.14 2.62 8.06 -2.91 -0.02 2.60 16 29 H 0.16 1.74 8.06 -2.91 -0.02 1.72 16 30 H 0.16 1.81 8.06 -2.91 -0.02 1.79 16 31 H 0.14 2.85 8.06 -2.91 -0.02 2.83 16 32 H 0.38 12.12 7.70 -74.06 -0.57 11.55 16 33 H 0.34 10.00 7.47 -89.70 -0.67 9.33 16 34 H 0.33 11.11 6.20 -89.70 -0.56 10.55 16 Total: -1.00 -63.22 281.78 0.78 -62.44 By element: Atomic # 1 Polarization: 38.16 SS G_CDS: -0.36 Total: 37.80 kcal Atomic # 6 Polarization: -39.41 SS G_CDS: 2.26 Total: -37.15 kcal Atomic # 7 Polarization: -83.02 SS G_CDS: -1.15 Total: -84.17 kcal Atomic # 8 Polarization: -16.30 SS G_CDS: -0.93 Total: -17.23 kcal Atomic # 14 Polarization: 49.29 SS G_CDS: 2.05 Total: 51.34 kcal Atomic # 16 Polarization: -11.93 SS G_CDS: -1.10 Total: -13.03 kcal Total: -63.22 0.78 -62.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259787722.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.247 kcal (2) G-P(sol) polarization free energy of solvation -63.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds