Wall clock time and date at job start Mon Mar 30 2020 06:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34551 * 126.07767 * 2 1 4 4 O 1.34761 * 107.27759 * 180.02562 * 3 2 1 5 5 C 1.34440 * 107.68630 * 359.97438 * 4 3 2 6 6 C 1.47836 * 125.72404 * 179.97438 * 5 4 3 7 7 N 1.31197 * 121.32210 * 180.02562 * 6 5 4 8 8 S 1.69941 * 105.61864 * 179.78880 * 7 6 5 9 9 C 1.72238 * 94.69256 * 0.29846 * 8 7 6 10 10 C 1.50706 * 127.34291 * 179.97438 * 9 8 7 11 11 C 1.53000 * 109.47116 * 269.68127 * 10 9 8 12 12 C 1.50696 * 109.47110 * 179.97438 * 11 10 9 13 13 H 1.07997 * 120.00016 * 0.02562 * 12 11 10 14 14 C 1.37877 * 119.99838 * 180.02562 * 12 11 10 15 15 N 1.31516 * 120.00069 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00113 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47254 * 59.99074 * 16 14 12 18 18 H 1.48495 * 109.47558 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.46814 * 299.99935 * 16 14 12 20 20 N 1.30618 * 105.31934 * 359.69863 * 9 8 7 21 21 N 1.31217 * 108.54795 * 0.24520 * 5 4 3 22 22 H 1.08996 * 109.47464 * 90.00168 * 1 2 3 23 23 H 1.09003 * 109.46865 * 210.00059 * 1 2 3 24 24 H 1.08999 * 109.47385 * 329.99386 * 1 2 3 25 25 H 1.08000 * 126.36119 * 0.02562 * 3 2 1 26 26 H 1.09000 * 109.46646 * 29.67541 * 10 9 8 27 27 H 1.09000 * 109.47248 * 149.68258 * 10 9 8 28 28 H 1.09000 * 109.47214 * 300.00167 * 11 10 9 29 29 H 1.09008 * 109.47142 * 59.99333 * 11 10 9 30 30 H 0.97000 * 119.99667 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2993 1.0875 0.0000 4 8 3.5750 0.6532 -0.0006 5 6 3.5489 -0.6910 -0.0003 6 6 4.7321 -1.5773 -0.0013 7 7 4.6060 -2.8832 -0.0015 8 16 6.1911 -3.4960 -0.0088 9 6 6.9415 -1.9456 -0.0022 10 6 8.4182 -1.6448 -0.0037 11 6 8.9193 -1.5426 1.4383 12 6 10.3961 -1.2424 1.4368 13 1 10.9243 -1.1348 0.5010 14 6 11.0728 -1.1052 2.6302 15 7 10.4295 -1.2358 3.7698 16 14 12.9032 -0.7323 2.6284 17 1 13.1456 0.5547 1.9283 18 1 13.3897 -0.6333 4.0279 19 1 13.6295 -1.8215 1.9273 20 7 5.9579 -1.0862 -0.0018 21 7 2.2970 -1.0841 -0.0050 22 1 -0.3634 0.0000 -1.0276 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3634 0.8899 0.5139 25 1 1.9735 2.1171 0.0004 26 1 8.9513 -2.4445 -0.5178 27 1 8.5961 -0.7003 -0.5179 28 1 8.3861 -0.7430 1.9525 29 1 8.7413 -2.4872 1.9526 30 1 10.9056 -1.1388 4.6093 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259816420.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:37 Heat of formation + Delta-G solvation = 68.826558 kcal Electronic energy + Delta-G solvation = -16454.548881 eV Core-core repulsion = 13571.520657 eV Total energy + Delta-G solvation = -2883.028225 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.063 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.46408 -40.06072 -35.39431 -34.66464 -32.82695 -31.63823 -30.59086 -28.13199 -26.55427 -25.00855 -22.60024 -21.60316 -20.94312 -19.73488 -18.58620 -17.34006 -16.93720 -16.54236 -15.69983 -15.03786 -14.67687 -14.51103 -13.90891 -13.52567 -13.41128 -13.19541 -12.45801 -12.36908 -12.12954 -11.66726 -11.48335 -11.19702 -10.97419 -10.82941 -10.72577 -10.33948 -10.14396 -9.78216 -9.66566 -9.46565 -9.29994 -8.53825 -8.47029 -6.11923 -4.16991 0.26411 1.20609 1.23395 1.43633 2.18456 2.72333 3.02557 3.25347 3.28178 3.33369 3.35061 4.32893 4.41820 4.60478 4.71963 5.16825 5.24506 5.33753 5.37197 5.47643 5.57047 5.68758 5.73220 5.99919 6.04917 6.18723 6.57776 7.37279 7.43875 7.53106 7.65987 7.83177 8.18784 8.87957 9.48131 10.99125 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.031588 B = 0.003945 C = 0.003665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.192945 B = 7095.562679 C = 7638.306282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.019 4.019 3 C -0.059 4.059 4 O -0.172 6.172 5 C 0.270 3.730 6 C 0.340 3.660 7 N -0.444 5.444 8 S 0.255 5.745 9 C 0.135 3.865 10 C -0.044 4.044 11 C 0.031 3.969 12 C -0.527 4.527 13 H 0.061 0.939 14 C 0.060 3.940 15 N -0.891 5.891 16 Si 0.897 3.103 17 H -0.275 1.275 18 H -0.287 1.287 19 H -0.275 1.275 20 N -0.505 5.505 21 N -0.434 5.434 22 H 0.076 0.924 23 H 0.077 0.923 24 H 0.076 0.924 25 H 0.223 0.777 26 H 0.090 0.910 27 H 0.095 0.905 28 H 0.027 0.973 29 H 0.023 0.977 30 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.792 1.684 -8.340 17.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.142 4.142 3 C -0.132 4.132 4 O -0.055 6.055 5 C 0.062 3.938 6 C 0.052 3.948 7 N -0.279 5.279 8 S 0.398 5.602 9 C -0.151 4.151 10 C -0.085 4.085 11 C -0.008 4.008 12 C -0.566 4.566 13 H 0.079 0.921 14 C -0.142 4.142 15 N -0.529 5.529 16 Si 0.725 3.275 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.201 1.201 20 N -0.228 5.228 21 N -0.167 5.167 22 H 0.094 0.906 23 H 0.096 0.904 24 H 0.095 0.905 25 H 0.239 0.761 26 H 0.108 0.892 27 H 0.113 0.887 28 H 0.045 0.955 29 H 0.041 0.959 30 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -15.449 -0.059 -8.165 17.474 hybrid contribution 1.178 1.986 0.226 2.320 sum -14.271 1.927 -7.939 16.444 Atomic orbital electron populations 1.20113 0.85917 1.03611 1.03042 1.21939 0.98477 0.87877 1.05884 1.25091 0.79871 1.01302 1.06922 1.84628 1.30152 1.22376 1.68324 1.21543 0.90181 0.78268 1.03813 1.19351 0.87755 0.86428 1.01238 1.77639 1.14815 1.09895 1.25523 1.85008 0.94971 1.16574 1.63621 1.29730 1.01833 0.92076 0.91456 1.20879 0.80074 1.03438 1.04124 1.19175 0.96473 0.98351 0.86801 1.21040 0.93011 1.49760 0.92746 0.92085 1.25012 0.98655 0.95029 0.95501 1.69954 1.36390 1.49153 0.97434 0.86570 0.84837 0.79012 0.77090 1.20084 1.21239 1.20060 1.67281 0.97080 1.36926 1.21468 1.70616 0.99140 1.30864 1.16031 0.90556 0.90366 0.90468 0.76101 0.89189 0.88674 0.95501 0.95864 0.92653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.55 10.42 36.00 0.38 -0.17 16 2 C -0.02 -0.24 7.10 -82.89 -0.59 -0.83 16 3 C -0.06 -0.66 12.08 29.43 0.36 -0.31 16 4 O -0.17 -2.72 10.80 4.07 0.04 -2.67 16 5 C 0.27 4.76 8.15 -13.89 -0.11 4.64 16 6 C 0.34 6.42 7.51 -158.83 -1.19 5.23 16 7 N -0.44 -8.14 12.19 29.55 0.36 -7.78 16 8 S 0.26 4.14 23.80 -107.50 -2.56 1.58 16 9 C 0.14 2.46 7.03 -12.79 -0.09 2.37 16 10 C -0.04 -0.82 5.78 -27.88 -0.16 -0.98 16 11 C 0.03 0.75 4.95 -27.89 -0.14 0.62 16 12 C -0.53 -13.89 9.11 -34.44 -0.31 -14.20 16 13 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 14 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 15 N -0.89 -25.85 13.29 55.43 0.74 -25.12 16 16 Si 0.90 20.69 29.54 -169.99 -5.02 15.67 16 17 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 18 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 20 N -0.51 -9.84 10.58 -11.28 -0.12 -9.96 16 21 N -0.43 -7.15 11.30 -7.97 -0.09 -7.24 16 22 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 23 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.22 1.33 8.06 -52.49 -0.42 0.90 16 26 H 0.09 1.47 8.14 -51.93 -0.42 1.04 16 27 H 0.09 1.73 8.14 -51.93 -0.42 1.31 16 28 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.02 0.58 8.14 -51.92 -0.42 0.16 16 30 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 291.52 15.07 4.39 4.39 Total: -1.00 -31.87 291.52 -7.14 -39.01 By element: Atomic # 1 Polarization: -2.90 SS G_CDS: -2.92 Total: -5.82 kcal Atomic # 6 Polarization: -0.11 SS G_CDS: -1.96 Total: -2.07 kcal Atomic # 7 Polarization: -50.99 SS G_CDS: 0.89 Total: -50.10 kcal Atomic # 8 Polarization: -2.72 SS G_CDS: 0.04 Total: -2.67 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Atomic # 16 Polarization: 4.14 SS G_CDS: -2.56 Total: 1.58 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -31.87 -7.14 -39.01 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259816420.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.839 kcal (2) G-P(sol) polarization free energy of solvation -31.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds