Wall clock time and date at job start Mon Mar 30 2020 06:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34551 * 126.07767 * 2 1 4 4 O 1.34761 * 107.27759 * 180.02562 * 3 2 1 5 5 C 1.34440 * 107.68630 * 359.97438 * 4 3 2 6 6 C 1.47836 * 125.72404 * 179.97438 * 5 4 3 7 7 N 1.31197 * 121.32210 * 180.02562 * 6 5 4 8 8 S 1.69941 * 105.61864 * 179.78880 * 7 6 5 9 9 C 1.72238 * 94.69256 * 0.29846 * 8 7 6 10 10 C 1.50706 * 127.34291 * 179.97438 * 9 8 7 11 11 C 1.53000 * 109.47116 * 269.68127 * 10 9 8 12 12 C 1.50696 * 109.47110 * 179.97438 * 11 10 9 13 13 H 1.07997 * 120.00016 * 0.02562 * 12 11 10 14 14 C 1.37877 * 119.99838 * 180.02562 * 12 11 10 15 15 N 1.31516 * 120.00069 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00113 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47254 * 59.99074 * 16 14 12 18 18 H 1.48495 * 109.47558 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.46814 * 299.99935 * 16 14 12 20 20 N 1.30618 * 105.31934 * 359.69863 * 9 8 7 21 21 N 1.31217 * 108.54795 * 0.24520 * 5 4 3 22 22 H 1.08996 * 109.47464 * 90.00168 * 1 2 3 23 23 H 1.09003 * 109.46865 * 210.00059 * 1 2 3 24 24 H 1.08999 * 109.47385 * 329.99386 * 1 2 3 25 25 H 1.08000 * 126.36119 * 0.02562 * 3 2 1 26 26 H 1.09000 * 109.46646 * 29.67541 * 10 9 8 27 27 H 1.09000 * 109.47248 * 149.68258 * 10 9 8 28 28 H 1.09000 * 109.47214 * 300.00167 * 11 10 9 29 29 H 1.09008 * 109.47142 * 59.99333 * 11 10 9 30 30 H 0.97000 * 119.99667 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2993 1.0875 0.0000 4 8 3.5750 0.6532 -0.0006 5 6 3.5489 -0.6910 -0.0003 6 6 4.7321 -1.5773 -0.0013 7 7 4.6060 -2.8832 -0.0015 8 16 6.1911 -3.4960 -0.0088 9 6 6.9415 -1.9456 -0.0022 10 6 8.4182 -1.6448 -0.0037 11 6 8.9193 -1.5426 1.4383 12 6 10.3961 -1.2424 1.4368 13 1 10.9243 -1.1348 0.5010 14 6 11.0728 -1.1052 2.6302 15 7 10.4295 -1.2358 3.7698 16 14 12.9032 -0.7323 2.6284 17 1 13.1456 0.5547 1.9283 18 1 13.3897 -0.6333 4.0279 19 1 13.6295 -1.8215 1.9273 20 7 5.9579 -1.0862 -0.0018 21 7 2.2970 -1.0841 -0.0050 22 1 -0.3634 0.0000 -1.0276 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3634 0.8899 0.5139 25 1 1.9735 2.1171 0.0004 26 1 8.9513 -2.4445 -0.5178 27 1 8.5961 -0.7003 -0.5179 28 1 8.3861 -0.7430 1.9525 29 1 8.7413 -2.4872 1.9526 30 1 10.9056 -1.1388 4.6093 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259816420.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:36 Heat of formation + Delta-G solvation = 45.728454 kcal Electronic energy + Delta-G solvation = -16455.550490 eV Core-core repulsion = 13571.520657 eV Total energy + Delta-G solvation = -2884.029834 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.063 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -44.54469 -41.45579 -36.52784 -36.29681 -34.53391 -32.83616 -32.13646 -29.18892 -28.08808 -26.38730 -24.24327 -22.67312 -22.43076 -21.13178 -19.91327 -18.57588 -18.43722 -18.06910 -16.86422 -16.63106 -16.25195 -15.71580 -15.35522 -15.02469 -14.30539 -14.19468 -14.04224 -13.49316 -13.44070 -13.12127 -13.06632 -12.74461 -12.58722 -12.30153 -12.02578 -11.85967 -11.81944 -11.38655 -11.32863 -11.04086 -10.73905 -10.54508 -9.64479 -8.19350 -6.31287 -1.09066 -0.11756 0.02550 0.09474 1.08967 1.46451 1.48877 1.56281 1.57466 1.75011 2.11953 2.44019 3.15901 3.18903 3.65267 3.80277 3.98122 4.11353 4.44343 4.49939 4.55540 4.67131 4.78838 4.80942 4.90551 4.93196 5.32203 5.44759 5.53441 5.78625 6.11604 6.15020 6.48130 6.84218 7.38846 8.92574 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.031588 B = 0.003945 C = 0.003665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.192945 B = 7095.562679 C = 7638.306282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.037 4.037 3 C -0.034 4.034 4 O -0.190 6.190 5 C 0.225 3.775 6 C 0.334 3.666 7 N -0.466 5.466 8 S 0.313 5.687 9 C 0.116 3.884 10 C -0.030 4.030 11 C 0.036 3.964 12 C -0.539 4.539 13 H 0.077 0.923 14 C 0.001 3.999 15 N -0.935 5.935 16 Si 0.968 3.032 17 H -0.267 1.267 18 H -0.290 1.290 19 H -0.261 1.261 20 N -0.525 5.525 21 N -0.450 5.450 22 H 0.090 0.910 23 H 0.069 0.931 24 H 0.110 0.890 25 H 0.276 0.724 26 H 0.119 0.881 27 H 0.100 0.900 28 H -0.011 1.011 29 H 0.004 0.996 30 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.198 2.469 -9.478 18.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.160 4.160 3 C -0.106 4.106 4 O -0.073 6.073 5 C 0.019 3.981 6 C 0.046 3.954 7 N -0.302 5.302 8 S 0.456 5.544 9 C -0.170 4.170 10 C -0.071 4.071 11 C -0.003 4.003 12 C -0.577 4.577 13 H 0.095 0.905 14 C -0.197 4.197 15 N -0.574 5.574 16 Si 0.792 3.208 17 H -0.192 1.192 18 H -0.215 1.215 19 H -0.186 1.186 20 N -0.249 5.249 21 N -0.185 5.185 22 H 0.109 0.891 23 H 0.088 0.912 24 H 0.128 0.872 25 H 0.291 0.709 26 H 0.137 0.863 27 H 0.118 0.882 28 H 0.008 0.992 29 H 0.023 0.977 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -15.833 0.717 -9.328 18.390 hybrid contribution 1.117 1.775 0.576 2.175 sum -14.716 2.492 -8.752 17.302 Atomic orbital electron populations 1.20290 0.82754 1.04872 1.04355 1.22731 1.00353 0.87085 1.05864 1.26235 0.78048 1.03240 1.03119 1.84618 1.32498 1.21808 1.68346 1.21437 0.90198 0.78922 1.07584 1.19544 0.88073 0.86815 1.00924 1.77527 1.16405 1.10068 1.26203 1.84687 0.93363 1.14186 1.62164 1.29586 1.01558 0.93450 0.92361 1.20629 0.80686 1.05040 1.00762 1.18968 0.95646 0.95857 0.89830 1.21556 0.94147 1.48670 0.93360 0.90489 1.25980 1.03617 0.94951 0.95176 1.70105 1.38381 1.50821 0.98133 0.85458 0.79001 0.79365 0.76984 1.19169 1.21533 1.18599 1.67290 0.97624 1.38031 1.21906 1.70576 0.99334 1.32979 1.15598 0.89122 0.91165 0.87154 0.70861 0.86284 0.88153 0.99227 0.97727 0.92781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.85 10.42 71.24 0.74 -0.11 16 2 C -0.04 -0.86 7.10 41.36 0.29 -0.56 16 3 C -0.03 -0.69 12.08 66.98 0.81 0.12 16 4 O -0.19 -5.93 10.80 -8.36 -0.09 -6.02 16 5 C 0.23 8.05 8.15 87.33 0.71 8.76 16 6 C 0.33 12.91 7.51 137.98 1.04 13.94 16 7 N -0.47 -17.35 12.19 -60.43 -0.74 -18.08 16 8 S 0.31 10.05 23.80 -56.49 -1.34 8.71 16 9 C 0.12 4.25 7.03 88.29 0.62 4.87 16 10 C -0.03 -1.13 5.78 29.85 0.17 -0.96 16 11 C 0.04 1.79 4.95 29.85 0.15 1.94 16 12 C -0.54 -28.38 9.11 25.60 0.23 -28.15 16 13 H 0.08 3.71 7.74 -2.91 -0.02 3.69 16 14 C 0.00 0.05 5.46 84.65 0.46 0.51 16 15 N -0.93 -55.43 13.29 21.45 0.28 -55.14 16 16 Si 0.97 42.19 29.54 68.60 2.03 44.22 16 17 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 18 H -0.29 -12.64 7.11 99.48 0.71 -11.94 16 19 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 20 N -0.53 -20.93 10.58 -189.60 -2.01 -22.93 16 21 N -0.45 -14.81 11.30 -293.18 -3.31 -18.12 16 22 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 23 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.28 2.01 8.06 -2.91 -0.02 1.99 16 26 H 0.12 3.68 8.14 -2.39 -0.02 3.66 16 27 H 0.10 3.60 8.14 -2.39 -0.02 3.58 16 28 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 29 H 0.00 0.23 8.14 -2.38 -0.02 0.21 16 30 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 Total: -1.00 -71.52 291.52 1.22 -70.30 By element: Atomic # 1 Polarization: -4.47 SS G_CDS: 1.17 Total: -3.30 kcal Atomic # 6 Polarization: -4.86 SS G_CDS: 5.23 Total: 0.37 kcal Atomic # 7 Polarization: -108.51 SS G_CDS: -5.77 Total: -114.28 kcal Atomic # 8 Polarization: -5.93 SS G_CDS: -0.09 Total: -6.02 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Atomic # 16 Polarization: 10.05 SS G_CDS: -1.34 Total: 8.71 kcal Total: -71.52 1.22 -70.30 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259816420.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.025 kcal (2) G-P(sol) polarization free energy of solvation -71.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds