Wall clock time and date at job start Mon Mar 30 2020 06:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 S 1.70383 * 124.48424 * 2 1 4 4 C 1.75355 * 92.52081 * 180.02562 * 3 2 1 5 5 C 1.32630 * 111.21671 * 0.02562 * 4 3 2 6 6 C 1.35932 * 124.48949 * 179.97438 * 2 1 3 7 7 C 1.48397 * 126.69085 * 359.46812 * 6 2 1 8 8 O 1.21359 * 122.51286 * 12.12792 * 7 6 2 9 9 C 1.51835 * 115.04170 * 191.92114 * 7 6 2 10 10 H 1.08999 * 109.60591 * 75.84819 * 9 7 6 11 11 N 1.46503 * 109.60701 * 196.18246 * 9 7 6 12 12 C 1.46496 * 120.00027 * 59.66511 * 11 9 7 13 13 C 1.36935 * 119.99926 * 239.66676 * 11 9 7 14 14 H 1.08004 * 119.99942 * 41.45927 * 13 11 9 15 15 C 1.38812 * 120.00025 * 221.46700 * 13 11 9 16 16 N 1.31615 * 119.99823 * 203.22290 * 15 13 11 17 17 Si 1.86804 * 120.00050 * 23.22355 * 15 13 11 18 18 H 1.48497 * 109.46796 * 264.84453 * 17 15 13 19 19 H 1.48495 * 109.47090 * 24.84404 * 17 15 13 20 20 H 1.48497 * 109.47050 * 144.84402 * 17 15 13 21 21 C 1.53057 * 108.78789 * 316.01463 * 9 7 6 22 22 C 1.51960 * 125.79658 * 179.87426 * 5 4 3 23 23 H 1.08995 * 109.47193 * 0.03080 * 1 2 3 24 24 H 1.09005 * 109.46558 * 120.03253 * 1 2 3 25 25 H 1.08999 * 109.47125 * 240.02243 * 1 2 3 26 26 H 1.08003 * 124.38579 * 179.97438 * 4 3 2 27 27 H 1.09001 * 109.47218 * 274.16215 * 12 11 9 28 28 H 1.09000 * 109.47419 * 34.16907 * 12 11 9 29 29 H 1.09003 * 109.47277 * 154.16680 * 12 11 9 30 30 H 0.97003 * 120.00009 * 179.97438 * 16 15 13 31 31 H 1.09005 * 109.21619 * 188.00457 * 21 9 7 32 32 H 1.08996 * 109.22338 * 307.33890 * 21 9 7 33 33 H 1.08995 * 109.54547 * 80.89134 * 22 5 4 34 34 H 1.09004 * 109.54514 * 320.62312 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4717 1.4044 0.0000 4 6 3.9594 0.4761 -0.0008 5 6 3.7121 -0.8269 -0.0016 6 6 2.2768 -1.1204 0.0005 7 6 1.7981 -2.5250 0.0122 8 8 0.6390 -2.8208 -0.1923 9 6 2.8669 -3.5659 0.2941 10 1 3.1091 -3.5629 1.3568 11 7 2.3775 -4.8909 -0.0948 12 6 1.9845 -5.1483 -1.4824 13 6 2.2874 -5.8886 0.8387 14 1 1.9165 -5.6696 1.8291 15 6 2.6731 -7.1815 0.5121 16 7 2.1898 -8.2027 1.1873 17 14 3.8779 -7.4720 -0.8856 18 1 3.1274 -7.7633 -2.1334 19 1 4.7112 -6.2585 -1.0810 20 1 4.7527 -8.6250 -0.5534 21 6 4.1172 -3.2212 -0.5187 22 6 4.7573 -1.9300 -0.0051 23 1 -0.3633 1.0276 -0.0006 24 1 -0.3632 -0.5144 -0.8898 25 1 -0.3633 -0.5135 0.8902 26 1 4.9487 0.9094 -0.0014 27 1 0.9457 -4.8517 -1.6268 28 1 2.6231 -4.5739 -2.1535 29 1 2.0924 -6.2111 -1.6994 30 1 2.4590 -9.1062 0.9589 31 1 4.8362 -4.0362 -0.4339 32 1 3.8412 -3.0948 -1.5655 33 1 5.1284 -2.0839 1.0081 34 1 5.5830 -1.6478 -0.6584 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259824193.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:14 Heat of formation + Delta-G solvation = 13.117708 kcal Electronic energy + Delta-G solvation = -18269.309845 eV Core-core repulsion = 15487.406247 eV Total energy + Delta-G solvation = -2781.903598 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.67786 -36.97809 -35.92450 -33.43559 -31.85130 -30.81942 -28.28850 -26.31535 -25.68532 -24.03896 -22.41302 -20.41203 -20.02312 -17.61162 -17.14144 -16.64849 -15.66305 -15.40579 -14.73670 -14.46048 -13.98717 -13.65289 -13.47707 -13.33185 -13.00237 -12.81815 -12.50190 -12.23462 -12.08538 -11.99933 -11.63296 -11.43153 -11.14895 -10.90019 -10.71219 -10.51247 -10.34933 -10.05542 -9.66342 -9.14248 -8.65730 -8.43824 -8.23827 -6.74799 -6.01629 -3.46600 0.87257 1.56155 1.92175 1.99322 3.32364 3.33209 3.45426 3.50476 4.51859 4.58184 4.59680 4.94113 4.96970 5.20976 5.28162 5.29533 5.36287 5.46346 5.61774 5.68375 5.79070 6.00434 6.05134 6.05953 6.12573 6.30711 6.32989 6.44579 6.56094 6.60228 6.75418 6.90300 8.00112 8.14936 8.42055 8.95763 9.67690 10.09466 11.13294 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.033454 B = 0.006134 C = 0.005546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.760605 B = 4563.870956 C = 5047.409986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.150 4.150 3 S 0.147 5.853 4 C -0.247 4.247 5 C -0.055 4.055 6 C -0.192 4.192 7 C 0.398 3.602 8 O -0.433 6.433 9 C 0.141 3.859 10 H 0.105 0.895 11 N -0.589 5.589 12 C 0.110 3.890 13 C -0.273 4.273 14 H 0.076 0.924 15 C 0.042 3.958 16 N -0.895 5.895 17 Si 0.878 3.122 18 H -0.286 1.286 19 H -0.266 1.266 20 H -0.300 1.300 21 C -0.131 4.131 22 C -0.057 4.057 23 H 0.064 0.936 24 H 0.085 0.915 25 H 0.082 0.918 26 H 0.163 0.837 27 H 0.023 0.977 28 H 0.024 0.976 29 H 0.049 0.951 30 H 0.264 0.736 31 H 0.083 0.917 32 H 0.059 0.941 33 H 0.085 0.915 34 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.204 18.759 -3.442 19.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.269 4.269 3 S 0.414 5.586 4 C -0.381 4.381 5 C -0.066 4.066 6 C -0.207 4.207 7 C 0.269 3.731 8 O -0.306 6.306 9 C 0.031 3.969 10 H 0.123 0.877 11 N -0.311 5.311 12 C -0.035 4.035 13 C -0.401 4.401 14 H 0.093 0.907 15 C -0.159 4.159 16 N -0.535 5.535 17 Si 0.707 3.293 18 H -0.214 1.214 19 H -0.190 1.190 20 H -0.228 1.228 21 C -0.170 4.170 22 C -0.097 4.097 23 H 0.083 0.917 24 H 0.104 0.896 25 H 0.101 0.899 26 H 0.181 0.819 27 H 0.042 0.958 28 H 0.043 0.957 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.101 0.899 32 H 0.078 0.922 33 H 0.103 0.897 34 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.248 19.940 -3.521 20.507 hybrid contribution 1.091 -1.693 -0.790 2.164 sum 4.339 18.247 -4.311 19.245 Atomic orbital electron populations 1.20392 0.87175 1.02062 1.04455 1.24455 1.01370 0.97064 1.03968 1.82799 0.95350 1.07939 1.72474 1.24935 1.01806 0.96625 1.14749 1.20873 0.93309 0.94022 0.98405 1.21935 0.92634 0.96152 1.10002 1.23850 0.89943 0.87532 0.71747 1.90475 1.20318 1.84176 1.35596 1.21062 0.90133 0.85700 0.99955 0.87728 1.43786 1.73793 1.07086 1.06440 1.21356 0.97419 0.99320 0.85364 1.18721 1.38736 0.87032 0.95627 0.90652 1.25540 0.97450 0.95664 0.97282 1.69897 1.42455 0.98510 1.42628 0.86896 0.82786 0.77319 0.82279 1.21397 1.19036 1.22799 1.22069 0.98321 0.96451 1.00202 1.20574 0.94917 0.91790 1.02466 0.91732 0.89632 0.89935 0.81908 0.95826 0.95709 0.93225 0.92617 0.89883 0.92232 0.89651 0.90425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.05 9.15 36.01 0.33 -0.73 16 2 C -0.15 -2.11 6.33 -35.13 -0.22 -2.33 16 3 S 0.15 1.63 22.93 -107.50 -2.47 -0.84 16 4 C -0.25 -2.82 10.96 28.83 0.32 -2.51 16 5 C -0.06 -0.76 5.92 -102.57 -0.61 -1.36 16 6 C -0.19 -3.09 6.00 -103.21 -0.62 -3.71 16 7 C 0.40 7.78 6.57 -29.57 -0.19 7.58 16 8 O -0.43 -9.64 15.15 5.49 0.08 -9.55 16 9 C 0.14 2.84 2.75 -68.49 -0.19 2.65 16 10 H 0.11 2.10 7.90 -51.93 -0.41 1.69 16 11 N -0.59 -14.40 2.07 -174.13 -0.36 -14.76 16 12 C 0.11 2.55 8.54 59.84 0.51 3.07 16 13 C -0.27 -7.72 9.77 -15.06 -0.15 -7.87 16 14 H 0.08 2.31 8.06 -52.48 -0.42 1.89 16 15 C 0.04 1.21 5.22 -17.43 -0.09 1.12 16 16 N -0.89 -27.37 13.97 55.49 0.78 -26.59 16 17 Si 0.88 21.94 25.34 -169.99 -4.31 17.63 16 18 H -0.29 -7.08 6.71 56.52 0.38 -6.70 16 19 H -0.27 -6.30 6.80 56.52 0.38 -5.91 16 20 H -0.30 -7.57 7.11 56.52 0.40 -7.17 16 21 C -0.13 -2.17 4.84 -26.70 -0.13 -2.30 16 22 C -0.06 -0.74 6.19 -27.26 -0.17 -0.91 16 23 H 0.06 0.64 8.11 -51.93 -0.42 0.22 16 24 H 0.09 1.17 7.94 -51.93 -0.41 0.76 16 25 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 26 H 0.16 1.42 8.06 -52.48 -0.42 0.99 16 27 H 0.02 0.56 7.49 -51.93 -0.39 0.17 16 28 H 0.02 0.50 6.59 -51.93 -0.34 0.16 16 29 H 0.05 1.21 4.09 -51.93 -0.21 1.00 16 30 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 31 H 0.08 1.46 7.83 -51.93 -0.41 1.06 16 32 H 0.06 0.99 6.99 -51.93 -0.36 0.63 16 33 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 288.12 15.07 4.34 4.34 Total: -1.00 -31.96 288.12 -7.39 -39.35 By element: Atomic # 1 Polarization: 1.97 SS G_CDS: -4.25 Total: -2.28 kcal Atomic # 6 Polarization: -6.09 SS G_CDS: -1.21 Total: -7.30 kcal Atomic # 7 Polarization: -41.77 SS G_CDS: 0.41 Total: -41.36 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: 0.08 Total: -9.55 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.31 Total: 17.63 kcal Atomic # 16 Polarization: 1.63 SS G_CDS: -2.47 Total: -0.84 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -31.96 -7.39 -39.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259824193.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.472 kcal (2) G-P(sol) polarization free energy of solvation -31.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds