Wall clock time and date at job start Mon Mar 30 2020 06:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 S 1.70383 * 124.48424 * 2 1 4 4 C 1.75355 * 92.52081 * 180.02562 * 3 2 1 5 5 C 1.32630 * 111.21671 * 0.02562 * 4 3 2 6 6 C 1.35932 * 124.48949 * 179.97438 * 2 1 3 7 7 C 1.48397 * 126.69085 * 359.46812 * 6 2 1 8 8 O 1.21359 * 122.51286 * 12.12792 * 7 6 2 9 9 C 1.51835 * 115.04170 * 191.92114 * 7 6 2 10 10 H 1.08999 * 109.60591 * 75.84819 * 9 7 6 11 11 N 1.46503 * 109.60701 * 196.18246 * 9 7 6 12 12 C 1.46496 * 120.00027 * 59.66511 * 11 9 7 13 13 C 1.36935 * 119.99926 * 239.66676 * 11 9 7 14 14 H 1.08004 * 119.99942 * 41.45927 * 13 11 9 15 15 C 1.38812 * 120.00025 * 221.46700 * 13 11 9 16 16 N 1.31615 * 119.99823 * 203.22290 * 15 13 11 17 17 Si 1.86804 * 120.00050 * 23.22355 * 15 13 11 18 18 H 1.48497 * 109.46796 * 264.84453 * 17 15 13 19 19 H 1.48495 * 109.47090 * 24.84404 * 17 15 13 20 20 H 1.48497 * 109.47050 * 144.84402 * 17 15 13 21 21 C 1.53057 * 108.78789 * 316.01463 * 9 7 6 22 22 C 1.51960 * 125.79658 * 179.87426 * 5 4 3 23 23 H 1.08995 * 109.47193 * 0.03080 * 1 2 3 24 24 H 1.09005 * 109.46558 * 120.03253 * 1 2 3 25 25 H 1.08999 * 109.47125 * 240.02243 * 1 2 3 26 26 H 1.08003 * 124.38579 * 179.97438 * 4 3 2 27 27 H 1.09001 * 109.47218 * 274.16215 * 12 11 9 28 28 H 1.09000 * 109.47419 * 34.16907 * 12 11 9 29 29 H 1.09003 * 109.47277 * 154.16680 * 12 11 9 30 30 H 0.97003 * 120.00009 * 179.97438 * 16 15 13 31 31 H 1.09005 * 109.21619 * 188.00457 * 21 9 7 32 32 H 1.08996 * 109.22338 * 307.33890 * 21 9 7 33 33 H 1.08995 * 109.54547 * 80.89134 * 22 5 4 34 34 H 1.09004 * 109.54514 * 320.62312 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4717 1.4044 0.0000 4 6 3.9594 0.4761 -0.0008 5 6 3.7121 -0.8269 -0.0016 6 6 2.2768 -1.1204 0.0005 7 6 1.7981 -2.5250 0.0122 8 8 0.6390 -2.8208 -0.1923 9 6 2.8669 -3.5659 0.2941 10 1 3.1091 -3.5629 1.3568 11 7 2.3775 -4.8909 -0.0948 12 6 1.9845 -5.1483 -1.4824 13 6 2.2874 -5.8886 0.8387 14 1 1.9165 -5.6696 1.8291 15 6 2.6731 -7.1815 0.5121 16 7 2.1898 -8.2027 1.1873 17 14 3.8779 -7.4720 -0.8856 18 1 3.1274 -7.7633 -2.1334 19 1 4.7112 -6.2585 -1.0810 20 1 4.7527 -8.6250 -0.5534 21 6 4.1172 -3.2212 -0.5187 22 6 4.7573 -1.9300 -0.0051 23 1 -0.3633 1.0276 -0.0006 24 1 -0.3632 -0.5144 -0.8898 25 1 -0.3633 -0.5135 0.8902 26 1 4.9487 0.9094 -0.0014 27 1 0.9457 -4.8517 -1.6268 28 1 2.6231 -4.5739 -2.1535 29 1 2.0924 -6.2111 -1.6994 30 1 2.4590 -9.1062 0.9589 31 1 4.8362 -4.0362 -0.4339 32 1 3.8412 -3.0948 -1.5655 33 1 5.1284 -2.0839 1.0081 34 1 5.5830 -1.6478 -0.6584 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259824193.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:13 Heat of formation + Delta-G solvation = -6.792998 kcal Electronic energy + Delta-G solvation = -18270.173238 eV Core-core repulsion = 15487.406247 eV Total energy + Delta-G solvation = -2782.766991 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.05648 -38.25918 -37.64462 -34.92490 -33.56337 -32.29156 -29.56973 -28.09096 -27.25328 -25.25773 -24.11863 -21.70511 -21.30856 -19.10043 -18.85710 -17.96414 -17.33727 -16.82487 -16.27224 -16.01452 -15.38413 -15.06688 -14.82871 -14.68115 -14.37993 -14.31226 -14.15243 -13.78987 -13.56142 -13.23709 -13.01751 -12.70856 -12.63053 -12.39798 -12.15722 -12.14570 -11.94428 -11.65898 -11.56477 -10.89846 -10.39197 -9.66622 -9.19180 -8.72272 -8.24634 -5.68829 -0.25588 0.60449 0.84613 0.97624 1.33505 1.40867 1.54951 2.00755 2.42087 2.94897 3.18945 3.33948 3.61938 3.91912 4.02927 4.20200 4.27202 4.34546 4.44921 4.53001 4.54848 4.61677 4.70394 4.79222 4.94638 4.96450 4.99280 5.04720 5.22147 5.29294 5.35699 5.45173 5.88359 6.11834 6.64463 6.94335 7.53104 7.98138 8.94400 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.033454 B = 0.006134 C = 0.005546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.760605 B = 4563.870956 C = 5047.409986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.165 4.165 3 S 0.228 5.772 4 C -0.236 4.236 5 C -0.074 4.074 6 C -0.225 4.225 7 C 0.396 3.604 8 O -0.478 6.478 9 C 0.131 3.869 10 H 0.095 0.905 11 N -0.602 5.602 12 C 0.113 3.887 13 C -0.271 4.271 14 H 0.030 0.970 15 C -0.012 4.012 16 N -0.945 5.945 17 Si 0.947 3.053 18 H -0.280 1.280 19 H -0.241 1.241 20 H -0.301 1.301 21 C -0.120 4.120 22 C -0.048 4.048 23 H 0.096 0.904 24 H 0.070 0.930 25 H 0.066 0.934 26 H 0.200 0.800 27 H 0.009 0.991 28 H 0.057 0.943 29 H 0.036 0.964 30 H 0.266 0.734 31 H 0.075 0.925 32 H 0.060 0.940 33 H 0.095 0.905 34 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.845 22.238 -5.000 23.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.285 4.285 3 S 0.495 5.505 4 C -0.370 4.370 5 C -0.084 4.084 6 C -0.241 4.241 7 C 0.272 3.728 8 O -0.355 6.355 9 C 0.023 3.977 10 H 0.112 0.888 11 N -0.325 5.325 12 C -0.031 4.031 13 C -0.401 4.401 14 H 0.048 0.952 15 C -0.210 4.210 16 N -0.587 5.587 17 Si 0.774 3.226 18 H -0.207 1.207 19 H -0.164 1.164 20 H -0.229 1.229 21 C -0.160 4.160 22 C -0.088 4.088 23 H 0.115 0.885 24 H 0.089 0.911 25 H 0.085 0.915 26 H 0.217 0.783 27 H 0.028 0.972 28 H 0.075 0.925 29 H 0.055 0.945 30 H 0.075 0.925 31 H 0.094 0.906 32 H 0.079 0.921 33 H 0.114 0.886 34 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 5.920 23.482 -5.084 24.745 hybrid contribution 0.146 -2.584 -0.214 2.597 sum 6.067 20.898 -5.298 22.397 Atomic orbital electron populations 1.20401 0.87081 1.03665 1.03006 1.24786 1.02232 0.98658 1.02806 1.82582 0.93534 1.04667 1.69684 1.25385 1.03778 0.95825 1.12012 1.20831 0.91879 0.95279 1.00380 1.21702 0.94591 0.94327 1.13515 1.23913 0.88919 0.89550 0.70437 1.90450 1.21695 1.85205 1.38140 1.21314 0.92348 0.83825 1.00234 0.88754 1.43813 1.74700 1.07890 1.06116 1.21328 0.97430 0.98907 0.85449 1.18538 1.38151 0.88592 0.94806 0.95248 1.26209 0.98949 0.95094 1.00737 1.70032 1.44133 0.99061 1.45499 0.85786 0.80157 0.77918 0.78779 1.20702 1.16368 1.22921 1.21908 0.96017 0.98524 0.99505 1.20554 0.95220 0.89304 1.03699 0.88502 0.91124 0.91521 0.78286 0.97241 0.92470 0.94515 0.92518 0.90643 0.92133 0.88635 0.86977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.08 9.15 71.24 0.65 -1.43 16 2 C -0.17 -4.34 6.33 25.15 0.16 -4.19 16 3 S 0.23 3.98 22.93 -56.49 -1.30 2.69 16 4 C -0.24 -4.16 10.96 66.66 0.73 -3.43 16 5 C -0.07 -1.76 5.92 -18.47 -0.11 -1.87 16 6 C -0.23 -7.00 6.00 -18.95 -0.11 -7.11 16 7 C 0.40 15.88 6.57 28.76 0.19 16.07 16 8 O -0.48 -22.43 15.15 -3.28 -0.05 -22.48 16 9 C 0.13 5.34 2.75 44.63 0.12 5.47 16 10 H 0.09 3.96 7.90 -2.39 -0.02 3.94 16 11 N -0.60 -30.22 2.07 -704.83 -1.46 -31.68 16 12 C 0.11 5.29 8.54 127.77 1.09 6.39 16 13 C -0.27 -16.13 9.77 84.03 0.82 -15.31 16 14 H 0.03 1.97 8.06 -2.91 -0.02 1.95 16 15 C -0.01 -0.74 5.22 84.86 0.44 -0.30 16 16 N -0.94 -60.20 13.97 21.65 0.30 -59.90 16 17 Si 0.95 45.79 25.34 68.60 1.74 47.52 16 18 H -0.28 -13.18 6.71 99.48 0.67 -12.52 16 19 H -0.24 -10.55 6.80 99.48 0.68 -9.87 16 20 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 21 C -0.12 -3.77 4.84 30.61 0.15 -3.62 16 22 C -0.05 -1.06 6.19 30.25 0.19 -0.87 16 23 H 0.10 1.70 8.11 -2.39 -0.02 1.68 16 24 H 0.07 1.97 7.94 -2.38 -0.02 1.95 16 25 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 26 H 0.20 2.07 8.06 -2.91 -0.02 2.05 16 27 H 0.01 0.46 7.49 -2.39 -0.02 0.44 16 28 H 0.06 2.27 6.59 -2.39 -0.02 2.25 16 29 H 0.04 1.79 4.09 -2.39 -0.01 1.78 16 30 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 31 H 0.07 2.48 7.83 -2.38 -0.02 2.46 16 32 H 0.06 1.87 6.99 -2.39 -0.02 1.86 16 33 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.11 1.76 8.14 -2.38 -0.02 1.74 16 Total: -1.00 -73.92 288.12 4.60 -69.32 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: 1.04 Total: 4.73 kcal Atomic # 6 Polarization: -14.53 SS G_CDS: 4.32 Total: -10.21 kcal Atomic # 7 Polarization: -90.42 SS G_CDS: -1.16 Total: -91.57 kcal Atomic # 8 Polarization: -22.43 SS G_CDS: -0.05 Total: -22.48 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 1.74 Total: 47.52 kcal Atomic # 16 Polarization: 3.98 SS G_CDS: -1.30 Total: 2.69 kcal Total: -73.92 4.60 -69.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259824193.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.528 kcal (2) G-P(sol) polarization free energy of solvation -73.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds