Wall clock time and date at job start Mon Mar 30 2020 06:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 S 1.70380 * 124.48848 * 2 1 4 4 C 1.75353 * 92.52537 * 179.97438 * 3 2 1 5 5 C 1.32629 * 111.21584 * 359.97438 * 4 3 2 6 6 C 1.35942 * 124.49079 * 180.02562 * 2 1 3 7 7 C 1.48296 * 126.73364 * 0.18509 * 6 2 1 8 8 O 1.21345 * 122.45056 * 348.27745 * 7 6 2 9 9 C 1.51841 * 115.10058 * 168.01196 * 7 6 2 10 10 H 1.09008 * 109.60177 * 284.52146 * 9 7 6 11 11 N 1.46493 * 109.60461 * 164.19253 * 9 7 6 12 12 C 1.46500 * 120.00273 * 299.99561 * 11 9 7 13 13 C 1.36939 * 120.00156 * 119.99568 * 11 9 7 14 14 H 1.07999 * 119.99673 * 23.20086 * 13 11 9 15 15 C 1.38814 * 119.99926 * 203.20179 * 13 11 9 16 16 N 1.31621 * 120.00305 * 13.51808 * 15 13 11 17 17 Si 1.86802 * 119.99771 * 193.51718 * 15 13 11 18 18 H 1.48504 * 109.47160 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47125 * 120.00198 * 17 15 13 20 20 H 1.48506 * 109.47252 * 240.00096 * 17 15 13 21 21 C 1.53047 * 108.66011 * 44.27178 * 9 7 6 22 22 C 1.51961 * 125.80434 * 180.13477 * 5 4 3 23 23 H 1.08998 * 109.47458 * 359.96898 * 1 2 3 24 24 H 1.08996 * 109.47286 * 119.97527 * 1 2 3 25 25 H 1.09007 * 109.46702 * 239.97503 * 1 2 3 26 26 H 1.07995 * 124.39189 * 179.97438 * 4 3 2 27 27 H 1.09005 * 109.47112 * 95.14532 * 12 11 9 28 28 H 1.09000 * 109.47588 * 215.15369 * 12 11 9 29 29 H 1.09009 * 109.46792 * 335.15282 * 12 11 9 30 30 H 0.96991 * 119.99855 * 180.02562 * 16 15 13 31 31 H 1.08999 * 109.21840 * 52.59594 * 21 9 7 32 32 H 1.08998 * 109.21975 * 171.93894 * 21 9 7 33 33 H 1.09001 * 109.54346 * 39.26712 * 22 5 4 34 34 H 1.09004 * 109.54205 * 278.99601 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4718 1.4043 0.0000 4 6 3.9594 0.4761 0.0008 5 6 3.7121 -0.8270 0.0016 6 6 2.2768 -1.1205 -0.0005 7 6 1.7995 -2.5245 -0.0050 8 8 0.6401 -2.8187 0.1993 9 6 2.8664 -3.5666 -0.2901 10 1 3.1067 -3.5625 -1.3534 11 7 2.3757 -4.8913 0.0978 12 6 1.9917 -5.1522 1.4873 13 6 2.2760 -5.8857 -0.8383 14 1 2.8779 -5.8463 -1.7341 15 6 1.4013 -6.9444 -0.6358 16 7 0.4836 -6.8693 0.3047 17 14 1.5267 -8.4758 -1.6981 18 1 2.6325 -8.3111 -2.6755 19 1 1.7982 -9.6548 -0.8369 20 1 0.2488 -8.6789 -2.4268 21 6 4.1177 -3.2209 0.5206 22 6 4.7572 -1.9302 0.0053 23 1 -0.3634 1.0276 0.0006 24 1 -0.3634 -0.5134 -0.8902 25 1 -0.3633 -0.5143 0.8898 26 1 4.9487 0.9092 0.0006 27 1 0.9168 -5.0103 1.6000 28 1 2.2523 -6.1775 1.7500 29 1 2.5201 -4.4628 2.1459 30 1 -0.1273 -7.6092 0.4464 31 1 3.8428 -3.0929 1.5675 32 1 4.8365 -4.0359 0.4360 33 1 5.5837 -1.6473 0.6572 34 1 5.1270 -2.0855 -1.0082 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259824195.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:15 Heat of formation + Delta-G solvation = 12.857379 kcal Electronic energy + Delta-G solvation = -18231.439124 eV Core-core repulsion = 15449.524237 eV Total energy + Delta-G solvation = -2781.914887 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.49729 -36.79790 -35.68673 -33.38828 -31.70062 -30.21376 -28.02806 -26.00912 -25.57011 -23.90042 -22.30056 -20.29756 -19.93003 -17.45683 -17.04429 -16.53368 -15.44503 -14.98322 -14.81485 -14.09147 -13.69834 -13.67397 -13.40765 -13.19528 -12.75123 -12.61998 -12.35544 -12.01544 -11.82664 -11.55248 -11.37297 -11.14100 -10.82164 -10.70352 -10.52472 -10.43702 -10.36890 -9.90707 -9.84853 -8.83743 -8.55200 -8.46842 -8.13389 -6.70158 -5.67139 -3.15713 1.00063 1.66618 2.02425 2.12937 3.40163 3.46390 3.49069 3.52563 4.48687 4.70837 4.80144 5.02899 5.25246 5.35133 5.40288 5.42597 5.55254 5.59331 5.74072 5.82919 5.91567 6.09121 6.17026 6.19177 6.21961 6.42070 6.54860 6.68246 6.72826 6.84897 7.40940 7.81250 7.90202 8.31599 8.50001 9.25059 9.87214 10.36389 11.36288 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.032580 B = 0.005749 C = 0.005272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.225727 B = 4869.287430 C = 5309.427115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.152 4.152 3 S 0.139 5.861 4 C -0.248 4.248 5 C -0.056 4.056 6 C -0.190 4.190 7 C 0.387 3.613 8 O -0.422 6.422 9 C 0.142 3.858 10 H 0.094 0.906 11 N -0.578 5.578 12 C 0.161 3.839 13 C -0.262 4.262 14 H 0.070 0.930 15 C 0.007 3.993 16 N -0.896 5.896 17 Si 0.904 3.096 18 H -0.277 1.277 19 H -0.289 1.289 20 H -0.290 1.290 21 C -0.124 4.124 22 C -0.056 4.056 23 H 0.062 0.938 24 H 0.081 0.919 25 H 0.085 0.915 26 H 0.162 0.838 27 H 0.039 0.961 28 H 0.041 0.959 29 H -0.004 1.004 30 H 0.252 0.748 31 H 0.060 0.940 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.128 15.392 0.178 16.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.271 4.271 3 S 0.406 5.594 4 C -0.382 4.382 5 C -0.068 4.068 6 C -0.205 4.205 7 C 0.257 3.743 8 O -0.293 6.293 9 C 0.031 3.969 10 H 0.111 0.889 11 N -0.298 5.298 12 C 0.017 3.983 13 C -0.392 4.392 14 H 0.088 0.912 15 C -0.193 4.193 16 N -0.539 5.539 17 Si 0.734 3.266 18 H -0.202 1.202 19 H -0.216 1.216 20 H -0.217 1.217 21 C -0.164 4.164 22 C -0.096 4.096 23 H 0.081 0.919 24 H 0.100 0.900 25 H 0.104 0.896 26 H 0.180 0.820 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.015 0.985 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 6.043 16.619 0.358 17.687 hybrid contribution 0.287 -2.158 -0.528 2.240 sum 6.330 14.462 -0.170 15.787 Atomic orbital electron populations 1.20378 0.87259 1.01878 1.04499 1.24454 1.01323 0.96936 1.04369 1.82751 0.95495 1.08253 1.72882 1.24909 1.01680 0.96650 1.14927 1.20876 0.93423 0.93956 0.98498 1.22146 0.92557 0.96625 1.09208 1.24232 0.90411 0.87182 0.72468 1.90518 1.20079 1.83985 1.34759 1.21005 0.91219 0.85699 0.98959 0.88860 1.43823 1.75369 1.04610 1.05981 1.20825 0.98273 0.97020 0.82196 1.19243 1.18066 0.99697 1.02187 0.91176 1.25091 0.95590 0.99977 0.98615 1.70125 1.18573 1.30973 1.34251 0.86197 0.77369 0.83249 0.79762 1.20242 1.21571 1.21734 1.21954 0.98012 0.96025 1.00413 1.20556 0.94908 0.92000 1.02183 0.91870 0.90024 0.89607 0.82041 0.94254 0.94011 0.98526 0.93783 0.92079 0.90206 0.90496 0.89963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.17 9.15 36.01 0.33 -0.84 16 2 C -0.15 -2.33 6.33 -35.13 -0.22 -2.55 16 3 S 0.14 1.66 22.93 -107.50 -2.47 -0.80 16 4 C -0.25 -3.00 10.96 28.83 0.32 -2.68 16 5 C -0.06 -0.81 5.92 -102.57 -0.61 -1.42 16 6 C -0.19 -3.29 6.00 -103.26 -0.62 -3.91 16 7 C 0.39 8.23 6.56 -29.61 -0.19 8.04 16 8 O -0.42 -10.51 15.41 5.50 0.08 -10.43 16 9 C 0.14 2.97 2.74 -68.50 -0.19 2.79 16 10 H 0.09 1.91 7.87 -51.92 -0.41 1.50 16 11 N -0.58 -14.83 2.60 -174.13 -0.45 -15.28 16 12 C 0.16 4.17 7.93 59.85 0.47 4.64 16 13 C -0.26 -7.30 9.58 -15.06 -0.14 -7.45 16 14 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 15 C 0.01 0.19 5.09 -17.43 -0.09 0.11 16 16 N -0.90 -27.03 10.75 55.49 0.60 -26.43 16 17 Si 0.90 22.06 29.57 -169.99 -5.03 17.04 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 20 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 21 C -0.12 -2.06 4.88 -26.72 -0.13 -2.19 16 22 C -0.06 -0.73 6.19 -27.27 -0.17 -0.90 16 23 H 0.06 0.70 8.11 -51.93 -0.42 0.28 16 24 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 25 H 0.09 1.33 7.93 -51.93 -0.41 0.91 16 26 H 0.16 1.49 8.06 -52.49 -0.42 1.07 16 27 H 0.04 1.14 7.06 -51.93 -0.37 0.78 16 28 H 0.04 1.13 7.37 -51.93 -0.38 0.75 16 29 H 0.00 -0.09 6.56 -51.92 -0.34 -0.43 16 30 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 31 H 0.06 1.05 6.92 -51.93 -0.36 0.69 16 32 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 292.51 15.07 4.41 4.41 Total: -1.00 -32.34 292.51 -8.45 -40.79 By element: Atomic # 1 Polarization: 1.43 SS G_CDS: -4.35 Total: -2.92 kcal Atomic # 6 Polarization: -5.12 SS G_CDS: -1.24 Total: -6.37 kcal Atomic # 7 Polarization: -41.86 SS G_CDS: 0.14 Total: -41.72 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.08 Total: -10.43 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.03 Total: 17.04 kcal Atomic # 16 Polarization: 1.66 SS G_CDS: -2.47 Total: -0.80 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -32.34 -8.45 -40.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259824195.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.652 kcal (2) G-P(sol) polarization free energy of solvation -32.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds