Wall clock time and date at job start Mon Mar 30 2020 06:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 S 1.70380 * 124.48848 * 2 1 4 4 C 1.75353 * 92.52537 * 179.97438 * 3 2 1 5 5 C 1.32629 * 111.21584 * 359.97438 * 4 3 2 6 6 C 1.35942 * 124.49079 * 180.02562 * 2 1 3 7 7 C 1.48296 * 126.73364 * 0.18509 * 6 2 1 8 8 O 1.21345 * 122.45056 * 348.27745 * 7 6 2 9 9 C 1.51841 * 115.10058 * 168.01196 * 7 6 2 10 10 H 1.09008 * 109.60177 * 284.52146 * 9 7 6 11 11 N 1.46493 * 109.60461 * 164.19253 * 9 7 6 12 12 C 1.46500 * 120.00273 * 299.99561 * 11 9 7 13 13 C 1.36939 * 120.00156 * 119.99568 * 11 9 7 14 14 H 1.07999 * 119.99673 * 23.20086 * 13 11 9 15 15 C 1.38814 * 119.99926 * 203.20179 * 13 11 9 16 16 N 1.31621 * 120.00305 * 13.51808 * 15 13 11 17 17 Si 1.86802 * 119.99771 * 193.51718 * 15 13 11 18 18 H 1.48504 * 109.47160 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47125 * 120.00198 * 17 15 13 20 20 H 1.48506 * 109.47252 * 240.00096 * 17 15 13 21 21 C 1.53047 * 108.66011 * 44.27178 * 9 7 6 22 22 C 1.51961 * 125.80434 * 180.13477 * 5 4 3 23 23 H 1.08998 * 109.47458 * 359.96898 * 1 2 3 24 24 H 1.08996 * 109.47286 * 119.97527 * 1 2 3 25 25 H 1.09007 * 109.46702 * 239.97503 * 1 2 3 26 26 H 1.07995 * 124.39189 * 179.97438 * 4 3 2 27 27 H 1.09005 * 109.47112 * 95.14532 * 12 11 9 28 28 H 1.09000 * 109.47588 * 215.15369 * 12 11 9 29 29 H 1.09009 * 109.46792 * 335.15282 * 12 11 9 30 30 H 0.96991 * 119.99855 * 180.02562 * 16 15 13 31 31 H 1.08999 * 109.21840 * 52.59594 * 21 9 7 32 32 H 1.08998 * 109.21975 * 171.93894 * 21 9 7 33 33 H 1.09001 * 109.54346 * 39.26712 * 22 5 4 34 34 H 1.09004 * 109.54205 * 278.99601 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4718 1.4043 0.0000 4 6 3.9594 0.4761 0.0008 5 6 3.7121 -0.8270 0.0016 6 6 2.2768 -1.1205 -0.0005 7 6 1.7995 -2.5245 -0.0050 8 8 0.6401 -2.8187 0.1993 9 6 2.8664 -3.5666 -0.2901 10 1 3.1067 -3.5625 -1.3534 11 7 2.3757 -4.8913 0.0978 12 6 1.9917 -5.1522 1.4873 13 6 2.2760 -5.8857 -0.8383 14 1 2.8779 -5.8463 -1.7341 15 6 1.4013 -6.9444 -0.6358 16 7 0.4836 -6.8693 0.3047 17 14 1.5267 -8.4758 -1.6981 18 1 2.6325 -8.3111 -2.6755 19 1 1.7982 -9.6548 -0.8369 20 1 0.2488 -8.6789 -2.4268 21 6 4.1177 -3.2209 0.5206 22 6 4.7572 -1.9302 0.0053 23 1 -0.3634 1.0276 0.0006 24 1 -0.3634 -0.5134 -0.8902 25 1 -0.3633 -0.5143 0.8898 26 1 4.9487 0.9092 0.0006 27 1 0.9168 -5.0103 1.6000 28 1 2.2523 -6.1775 1.7500 29 1 2.5201 -4.4628 2.1459 30 1 -0.1273 -7.6092 0.4464 31 1 3.8428 -3.0929 1.5675 32 1 4.8365 -4.0359 0.4360 33 1 5.5837 -1.6473 0.6572 34 1 5.1270 -2.0855 -1.0082 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259824195.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:15 Heat of formation + Delta-G solvation = -6.778542 kcal Electronic energy + Delta-G solvation = -18232.290602 eV Core-core repulsion = 15449.524237 eV Total energy + Delta-G solvation = -2782.766364 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.96588 -38.20013 -37.48001 -34.93174 -33.22939 -31.86500 -29.41846 -28.06026 -27.07594 -25.20854 -24.07561 -21.68329 -21.25984 -19.05072 -18.67789 -17.92937 -17.01559 -16.68322 -16.32693 -15.73319 -15.29865 -15.17408 -14.66555 -14.51337 -14.31347 -14.09385 -13.78709 -13.66153 -13.11676 -13.08473 -12.83918 -12.66145 -12.55828 -12.40477 -12.23039 -12.12145 -11.82379 -11.71145 -11.60426 -10.72609 -10.37760 -9.64508 -9.16506 -8.76945 -7.82218 -5.33959 -0.21863 0.62229 0.90081 1.00219 1.45599 1.46243 1.57790 2.07701 2.49313 3.21003 3.43372 3.54236 3.67194 3.96138 4.09660 4.23471 4.31453 4.37834 4.51831 4.52955 4.65569 4.73337 4.81660 4.98852 5.00190 5.05128 5.19928 5.27388 5.33820 5.41166 5.49756 5.61847 5.70588 6.27741 6.81029 7.11763 7.81645 8.26945 9.20792 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.032580 B = 0.005749 C = 0.005272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.225727 B = 4869.287430 C = 5309.427115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.171 4.171 3 S 0.223 5.777 4 C -0.234 4.234 5 C -0.075 4.075 6 C -0.225 4.225 7 C 0.384 3.616 8 O -0.479 6.479 9 C 0.130 3.870 10 H 0.094 0.906 11 N -0.596 5.596 12 C 0.184 3.816 13 C -0.269 4.269 14 H 0.080 0.920 15 C -0.056 4.056 16 N -0.937 5.937 17 Si 0.974 3.026 18 H -0.259 1.259 19 H -0.289 1.289 20 H -0.296 1.296 21 C -0.112 4.112 22 C -0.046 4.046 23 H 0.097 0.903 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.202 0.798 27 H -0.003 1.003 28 H 0.019 0.981 29 H 0.023 0.977 30 H 0.246 0.754 31 H 0.050 0.950 32 H 0.082 0.918 33 H 0.112 0.888 34 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.064 18.230 -0.640 20.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.290 4.290 3 S 0.491 5.509 4 C -0.369 4.369 5 C -0.085 4.085 6 C -0.241 4.241 7 C 0.258 3.742 8 O -0.356 6.356 9 C 0.021 3.979 10 H 0.112 0.888 11 N -0.316 5.316 12 C 0.039 3.961 13 C -0.399 4.399 14 H 0.097 0.903 15 C -0.251 4.251 16 N -0.583 5.583 17 Si 0.802 3.198 18 H -0.183 1.183 19 H -0.215 1.215 20 H -0.224 1.224 21 C -0.151 4.151 22 C -0.086 4.086 23 H 0.116 0.884 24 H 0.082 0.918 25 H 0.083 0.917 26 H 0.219 0.781 27 H 0.015 0.985 28 H 0.038 0.962 29 H 0.042 0.958 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.101 0.899 33 H 0.131 0.869 34 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 9.042 19.512 -0.482 21.510 hybrid contribution -0.606 -2.805 -0.287 2.884 sum 8.436 16.707 -0.769 18.732 Atomic orbital electron populations 1.20364 0.87459 1.03482 1.02720 1.24766 1.02070 0.98834 1.03341 1.82508 0.93699 1.04726 1.70009 1.25389 1.03655 0.95776 1.12045 1.20876 0.91807 0.95418 1.00372 1.21882 0.94817 0.94584 1.12840 1.24366 0.89367 0.89717 0.70743 1.90497 1.22001 1.85259 1.37796 1.21356 0.92878 0.83769 0.99869 0.88794 1.43997 1.75657 1.06561 1.05434 1.20417 0.95922 0.96264 0.83518 1.19686 1.17417 1.00357 1.02430 0.90252 1.25968 0.95539 1.03266 1.00312 1.70334 1.19832 1.31625 1.36534 0.85100 0.77352 0.79154 0.78189 1.18254 1.21524 1.22385 1.21797 0.95764 0.98558 0.98991 1.20560 0.95018 0.89206 1.03768 0.88423 0.91759 0.91681 0.78088 0.98489 0.96219 0.95837 0.94450 0.93103 0.89907 0.86930 0.88319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.35 9.15 71.24 0.65 -1.70 16 2 C -0.17 -4.99 6.33 25.15 0.16 -4.83 16 3 S 0.22 4.32 22.93 -56.49 -1.30 3.03 16 4 C -0.23 -4.42 10.96 66.66 0.73 -3.69 16 5 C -0.07 -1.89 5.92 -18.47 -0.11 -2.00 16 6 C -0.23 -7.62 6.00 -18.98 -0.11 -7.74 16 7 C 0.38 16.90 6.56 28.73 0.19 17.08 16 8 O -0.48 -25.59 15.41 -3.23 -0.05 -25.64 16 9 C 0.13 5.53 2.74 44.63 0.12 5.66 16 10 H 0.09 3.90 7.87 -2.38 -0.02 3.88 16 11 N -0.60 -31.67 2.60 -704.82 -1.83 -33.50 16 12 C 0.18 10.02 7.93 127.77 1.01 11.04 16 13 C -0.27 -15.35 9.58 84.03 0.81 -14.55 16 14 H 0.08 4.27 7.83 -2.91 -0.02 4.25 16 15 C -0.06 -3.27 5.09 84.86 0.43 -2.84 16 16 N -0.94 -59.57 10.75 21.65 0.23 -59.34 16 17 Si 0.97 46.59 29.57 68.60 2.03 48.62 16 18 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 19 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 20 H -0.30 -14.35 7.11 99.48 0.71 -13.65 16 21 C -0.11 -3.55 4.88 30.60 0.15 -3.40 16 22 C -0.05 -1.02 6.19 30.25 0.19 -0.83 16 23 H 0.10 2.01 8.11 -2.39 -0.02 1.99 16 24 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 25 H 0.06 2.12 7.93 -2.38 -0.02 2.10 16 26 H 0.20 2.22 8.06 -2.91 -0.02 2.20 16 27 H 0.00 -0.20 7.06 -2.38 -0.02 -0.22 16 28 H 0.02 1.11 7.37 -2.39 -0.02 1.09 16 29 H 0.02 1.11 6.56 -2.38 -0.02 1.09 16 30 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 31 H 0.05 1.70 6.92 -2.39 -0.02 1.69 16 32 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 33 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -75.74 292.51 4.40 -71.34 By element: Atomic # 1 Polarization: 2.19 SS G_CDS: 1.10 Total: 3.29 kcal Atomic # 6 Polarization: -12.01 SS G_CDS: 4.22 Total: -7.80 kcal Atomic # 7 Polarization: -91.24 SS G_CDS: -1.60 Total: -92.84 kcal Atomic # 8 Polarization: -25.59 SS G_CDS: -0.05 Total: -25.64 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 2.03 Total: 48.62 kcal Atomic # 16 Polarization: 4.32 SS G_CDS: -1.30 Total: 3.03 kcal Total: -75.74 4.40 -71.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259824195.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.558 kcal (2) G-P(sol) polarization free energy of solvation -75.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds