Wall clock time and date at job start Mon Mar 30 2020 06:30:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35218 * 126.68828 * 2 1 4 4 C 1.42078 * 103.95579 * 180.13020 * 3 2 1 5 5 N 1.39261 * 126.90260 * 179.85430 * 4 3 2 6 6 C 1.38171 * 120.00118 * 185.23371 * 5 4 3 7 7 N 1.29608 * 125.01794 * 174.75057 * 6 5 4 8 8 C 1.33714 * 115.85949 * 180.02562 * 7 6 5 9 9 C 1.41053 * 122.83520 * 180.02562 * 8 7 6 10 10 H 1.08004 * 119.99627 * 179.97438 * 9 8 7 11 11 C 1.39623 * 119.99965 * 359.96556 * 9 8 7 12 12 N 1.31075 * 120.00103 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99750 * 180.02562 * 11 9 8 14 14 H 1.48505 * 109.46871 * 60.00239 * 13 11 9 15 15 H 1.48497 * 109.47245 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47206 * 300.00340 * 13 11 9 17 17 C 1.37744 * 114.32661 * 359.97438 * 8 7 6 18 18 C 1.50695 * 125.51450 * 180.02562 * 17 8 7 19 19 S 1.70969 * 108.97601 * 0.27040 * 17 8 7 20 20 N 1.30788 * 106.19730 * 359.59056 * 4 3 2 21 21 O 1.20916 * 111.45625 * 0.26867 * 20 4 3 22 22 H 1.08994 * 109.47476 * 180.30049 * 1 2 3 23 23 H 1.09001 * 109.46853 * 300.30403 * 1 2 3 24 24 H 1.09004 * 109.47066 * 60.30127 * 1 2 3 25 25 H 1.08000 * 128.02305 * 359.97438 * 3 2 1 26 26 H 0.96998 * 119.99382 * 5.23559 * 5 4 3 27 27 H 0.97005 * 120.00196 * 179.97438 * 12 11 9 28 28 H 1.08999 * 109.47189 * 90.00498 * 18 17 8 29 29 H 1.08998 * 109.47134 * 330.00602 * 18 17 8 30 30 H 1.09003 * 109.47620 * 210.00323 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3149 1.0843 0.0000 4 6 3.6253 0.5353 -0.0031 5 7 4.8268 1.2393 -0.0072 6 6 6.0250 0.5603 -0.1190 7 7 7.1891 1.1192 -0.2301 8 6 8.2296 0.2852 -0.3273 9 6 9.5607 0.7344 -0.4535 10 1 10.3670 0.0197 -0.5283 11 6 9.8359 2.1030 -0.4818 12 7 8.8574 2.9703 -0.3907 13 14 11.5987 2.6979 -0.6497 14 1 12.1736 2.1899 -1.9212 15 1 11.6218 4.1827 -0.6538 16 1 12.4022 2.1939 0.4930 17 6 7.8920 -1.0498 -0.2927 18 6 8.8610 -2.2005 -0.3819 19 16 6.1950 -1.1902 -0.1390 20 7 3.4764 -0.7641 0.0043 21 8 2.3081 -1.0754 0.0061 22 1 -0.3634 -1.0276 0.0054 23 1 -0.3633 0.5186 0.8873 24 1 -0.3633 0.5092 -0.8927 25 1 2.0301 2.1261 -0.0004 26 1 4.8225 2.2063 0.0685 27 1 9.0486 3.9211 -0.4101 28 1 9.1912 -2.4759 0.6197 29 1 9.7227 -1.9042 -0.9800 30 1 8.3699 -3.0537 -0.8499 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259824423.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:55 Heat of formation + Delta-G solvation = 103.760772 kcal Electronic energy + Delta-G solvation = -17096.540728 eV Core-core repulsion = 14215.027365 eV Total energy + Delta-G solvation = -2881.513363 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.063 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -44.55322 -38.05121 -36.18042 -33.60032 -33.03468 -31.68303 -30.25049 -27.79750 -27.12129 -23.96466 -23.13267 -22.40528 -20.45919 -19.07358 -17.85932 -17.37679 -16.48384 -16.00852 -15.32063 -15.12864 -14.52624 -13.73966 -13.65250 -13.57209 -13.32962 -12.97271 -12.44096 -12.26270 -11.69344 -11.42737 -11.36936 -11.31454 -10.97687 -10.84872 -10.46915 -10.30989 -9.42767 -9.22032 -9.20710 -8.57749 -8.00432 -7.58072 -6.66431 -6.47569 -4.25777 1.64299 2.19054 2.56430 2.85870 3.08605 3.11890 3.15015 3.16180 3.41021 3.88005 4.07079 4.37997 4.48614 4.95026 5.16610 5.24235 5.26387 5.52632 5.56273 5.67732 5.99946 6.43467 6.52288 6.76942 6.78894 7.17071 7.25947 7.33707 7.65859 7.80314 8.26334 8.64431 8.72468 8.96827 9.67039 10.39947 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.034664 B = 0.005264 C = 0.004589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.569784 B = 5317.807924 C = 6100.475871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.020 4.020 3 C -0.259 4.259 4 C 0.276 3.724 5 N -0.592 5.592 6 C 0.264 3.736 7 N -0.446 5.446 8 C 0.253 3.747 9 C -0.429 4.429 10 H 0.086 0.914 11 C 0.072 3.928 12 N -0.755 5.755 13 Si 0.910 3.090 14 H -0.266 1.266 15 H -0.279 1.279 16 H -0.266 1.266 17 C -0.466 4.466 18 C -0.015 4.015 19 S 0.059 5.941 20 N -0.387 5.387 21 O 0.090 5.910 22 H 0.081 0.919 23 H 0.088 0.912 24 H 0.088 0.912 25 H 0.170 0.830 26 H 0.426 0.574 27 H 0.271 0.729 28 H 0.032 0.968 29 H 0.053 0.947 30 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.529 -1.124 0.658 13.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.085 4.085 3 C -0.283 4.283 4 C 0.023 3.977 5 N -0.231 5.231 6 C -0.108 4.108 7 N -0.168 5.168 8 C 0.130 3.870 9 C -0.463 4.463 10 H 0.104 0.896 11 C -0.149 4.149 12 N -0.378 5.378 13 Si 0.734 3.266 14 H -0.190 1.190 15 H -0.205 1.205 16 H -0.190 1.190 17 C -0.588 4.588 18 C -0.075 4.075 19 S 0.302 5.698 20 N -0.109 5.109 21 O 0.035 5.965 22 H 0.100 0.900 23 H 0.106 0.894 24 H 0.106 0.894 25 H 0.188 0.812 26 H 0.266 0.734 27 H 0.082 0.918 28 H 0.051 0.949 29 H 0.072 0.928 30 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -13.410 -2.244 0.711 13.615 hybrid contribution 1.441 2.116 -0.118 2.563 sum -11.968 -0.128 0.593 11.984 Atomic orbital electron populations 1.20299 0.84308 1.04501 1.03833 1.24203 0.96177 0.86411 1.01681 1.21905 0.89604 1.01149 1.15686 1.20405 0.87267 0.89228 1.00771 1.39798 0.98314 1.08200 1.76784 1.24375 0.89278 0.92252 1.04870 1.67542 0.95431 1.34825 1.18987 1.17473 0.91823 0.85087 0.92587 1.18888 0.91002 0.91778 1.44649 0.89577 1.25974 0.98810 0.97041 0.93120 1.70138 1.32394 1.02326 1.32983 0.86357 0.82612 0.77772 0.79831 1.19029 1.20455 1.19025 1.24133 0.95760 0.98199 1.40667 1.19373 0.95961 0.93185 0.98959 1.83155 1.04153 1.04662 1.77782 1.74107 0.96066 1.12961 1.27763 1.84870 1.10650 1.31998 1.69009 0.89957 0.89378 0.89375 0.81214 0.73380 0.91812 0.94878 0.92814 0.94968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.46 10.45 36.00 0.38 -0.08 16 2 C -0.02 -0.24 7.47 -35.38 -0.26 -0.50 16 3 C -0.26 -3.40 11.11 -39.19 -0.44 -3.83 16 4 C 0.28 4.96 7.93 -154.98 -1.23 3.73 16 5 N -0.59 -11.99 5.55 -12.17 -0.07 -12.06 16 6 C 0.26 6.56 8.34 -88.17 -0.74 5.83 16 7 N -0.45 -12.52 8.50 -11.71 -0.10 -12.62 16 8 C 0.25 7.28 6.47 -86.16 -0.56 6.73 16 9 C -0.43 -12.05 8.89 -38.00 -0.34 -12.38 16 10 H 0.09 2.29 6.75 -52.48 -0.35 1.93 16 11 C 0.07 1.92 5.49 -17.36 -0.10 1.82 16 12 N -0.75 -20.68 11.68 55.53 0.65 -20.03 16 13 Si 0.91 19.49 29.56 -169.99 -5.02 14.46 16 14 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 15 H -0.28 -5.82 7.11 56.52 0.40 -5.41 16 16 H -0.27 -5.61 7.11 56.52 0.40 -5.20 16 17 C -0.47 -12.32 6.47 -34.49 -0.22 -12.54 16 18 C -0.02 -0.35 9.99 36.00 0.36 0.01 16 19 S 0.06 1.43 20.50 -107.50 -2.20 -0.78 16 20 N -0.39 -7.34 9.50 31.18 0.30 -7.04 16 21 O 0.09 1.40 11.19 17.01 0.19 1.59 16 22 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 24 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.17 1.67 8.06 -52.49 -0.42 1.25 16 26 H 0.43 7.69 8.94 -40.82 -0.37 7.32 16 27 H 0.27 6.78 8.30 -40.82 -0.34 6.45 16 28 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.05 1.19 7.07 -51.93 -0.37 0.82 16 30 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 280.24 15.07 4.22 4.22 Total: -1.00 -33.03 280.24 -7.94 -40.97 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -2.76 Total: 2.50 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: -3.14 Total: -11.23 kcal Atomic # 7 Polarization: -52.53 SS G_CDS: 0.78 Total: -51.75 kcal Atomic # 8 Polarization: 1.40 SS G_CDS: 0.19 Total: 1.59 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.02 Total: 14.46 kcal Atomic # 16 Polarization: 1.43 SS G_CDS: -2.20 Total: -0.78 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -33.03 -7.94 -40.97 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259824423.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.730 kcal (2) G-P(sol) polarization free energy of solvation -33.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds