Wall clock time and date at job start Mon Mar 30 2020 06:30:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35218 * 126.68828 * 2 1 4 4 C 1.42078 * 103.95579 * 180.13020 * 3 2 1 5 5 N 1.39261 * 126.90260 * 179.85430 * 4 3 2 6 6 C 1.38171 * 120.00118 * 185.23371 * 5 4 3 7 7 N 1.29608 * 125.01794 * 174.75057 * 6 5 4 8 8 C 1.33714 * 115.85949 * 180.02562 * 7 6 5 9 9 C 1.41053 * 122.83520 * 180.02562 * 8 7 6 10 10 H 1.08004 * 119.99627 * 179.97438 * 9 8 7 11 11 C 1.39623 * 119.99965 * 359.96556 * 9 8 7 12 12 N 1.31075 * 120.00103 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99750 * 180.02562 * 11 9 8 14 14 H 1.48505 * 109.46871 * 60.00239 * 13 11 9 15 15 H 1.48497 * 109.47245 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47206 * 300.00340 * 13 11 9 17 17 C 1.37744 * 114.32661 * 359.97438 * 8 7 6 18 18 C 1.50695 * 125.51450 * 180.02562 * 17 8 7 19 19 S 1.70969 * 108.97601 * 0.27040 * 17 8 7 20 20 N 1.30788 * 106.19730 * 359.59056 * 4 3 2 21 21 O 1.20916 * 111.45625 * 0.26867 * 20 4 3 22 22 H 1.08994 * 109.47476 * 180.30049 * 1 2 3 23 23 H 1.09001 * 109.46853 * 300.30403 * 1 2 3 24 24 H 1.09004 * 109.47066 * 60.30127 * 1 2 3 25 25 H 1.08000 * 128.02305 * 359.97438 * 3 2 1 26 26 H 0.96998 * 119.99382 * 5.23559 * 5 4 3 27 27 H 0.97005 * 120.00196 * 179.97438 * 12 11 9 28 28 H 1.08999 * 109.47189 * 90.00498 * 18 17 8 29 29 H 1.08998 * 109.47134 * 330.00602 * 18 17 8 30 30 H 1.09003 * 109.47620 * 210.00323 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3149 1.0843 0.0000 4 6 3.6253 0.5353 -0.0031 5 7 4.8268 1.2393 -0.0072 6 6 6.0250 0.5603 -0.1190 7 7 7.1891 1.1192 -0.2301 8 6 8.2296 0.2852 -0.3273 9 6 9.5607 0.7344 -0.4535 10 1 10.3670 0.0197 -0.5283 11 6 9.8359 2.1030 -0.4818 12 7 8.8574 2.9703 -0.3907 13 14 11.5987 2.6979 -0.6497 14 1 12.1736 2.1899 -1.9212 15 1 11.6218 4.1827 -0.6538 16 1 12.4022 2.1939 0.4930 17 6 7.8920 -1.0498 -0.2927 18 6 8.8610 -2.2005 -0.3819 19 16 6.1950 -1.1902 -0.1390 20 7 3.4764 -0.7641 0.0043 21 8 2.3081 -1.0754 0.0061 22 1 -0.3634 -1.0276 0.0054 23 1 -0.3633 0.5186 0.8873 24 1 -0.3633 0.5092 -0.8927 25 1 2.0301 2.1261 -0.0004 26 1 4.8225 2.2063 0.0685 27 1 9.0486 3.9211 -0.4101 28 1 9.1912 -2.4759 0.6197 29 1 9.7227 -1.9042 -0.9800 30 1 8.3699 -3.0537 -0.8499 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259824423.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:55 Heat of formation + Delta-G solvation = 83.504329 kcal Electronic energy + Delta-G solvation = -17097.419113 eV Core-core repulsion = 14215.027365 eV Total energy + Delta-G solvation = -2882.391749 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.063 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -45.81439 -39.94611 -37.78818 -35.05461 -34.48713 -33.24835 -31.95748 -29.11793 -28.62439 -25.82086 -24.45096 -24.15667 -22.00778 -20.81705 -19.46261 -18.63742 -17.93784 -17.67132 -17.07051 -16.85082 -16.33230 -15.52373 -14.92063 -14.67199 -14.31935 -14.04259 -13.81501 -13.58073 -13.29959 -13.23869 -13.11600 -13.05901 -12.62817 -12.34847 -12.24927 -11.99495 -11.18528 -11.12082 -10.37390 -10.19531 -9.98088 -9.51859 -8.51978 -8.42613 -6.31340 0.34781 0.66669 0.70382 1.34343 1.37580 1.48054 1.51330 1.55197 2.02353 2.25358 2.42364 2.46609 3.32184 3.51079 3.89721 4.07727 4.38241 4.61099 4.72479 4.84442 4.88245 4.91028 4.95172 4.97919 5.26971 5.32578 5.42018 5.63504 5.83646 6.05427 6.31021 6.63397 6.92923 7.51202 7.70064 8.47052 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.034664 B = 0.005264 C = 0.004589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.569784 B = 5317.807924 C = 6100.475871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.001 4.001 3 C -0.256 4.256 4 C 0.243 3.757 5 N -0.590 5.590 6 C 0.265 3.735 7 N -0.486 5.486 8 C 0.220 3.780 9 C -0.465 4.465 10 H 0.089 0.911 11 C 0.026 3.974 12 N -0.788 5.788 13 Si 0.989 3.011 14 H -0.260 1.260 15 H -0.268 1.268 16 H -0.260 1.260 17 C -0.495 4.495 18 C -0.011 4.011 19 S 0.082 5.918 20 N -0.426 5.426 21 O 0.086 5.914 22 H 0.094 0.906 23 H 0.112 0.888 24 H 0.111 0.889 25 H 0.204 0.796 26 H 0.433 0.567 27 H 0.278 0.722 28 H 0.041 0.959 29 H 0.052 0.948 30 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.127 -0.762 0.638 15.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.065 4.065 3 C -0.280 4.280 4 C -0.007 4.007 5 N -0.230 5.230 6 C -0.107 4.107 7 N -0.210 5.210 8 C 0.096 3.904 9 C -0.500 4.500 10 H 0.107 0.893 11 C -0.192 4.192 12 N -0.413 5.413 13 Si 0.810 3.190 14 H -0.184 1.184 15 H -0.193 1.193 16 H -0.184 1.184 17 C -0.616 4.616 18 C -0.071 4.071 19 S 0.326 5.674 20 N -0.146 5.146 21 O 0.030 5.970 22 H 0.113 0.887 23 H 0.131 0.869 24 H 0.129 0.871 25 H 0.221 0.779 26 H 0.275 0.725 27 H 0.088 0.912 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -15.061 -1.900 0.696 15.196 hybrid contribution 1.625 1.935 -0.092 2.528 sum -13.437 0.035 0.604 13.450 Atomic orbital electron populations 1.20629 0.79917 1.06146 1.06013 1.25202 0.98155 0.84620 0.98557 1.22319 0.87137 1.03194 1.15372 1.20899 0.87818 0.89752 1.02262 1.39791 0.97804 1.08579 1.76837 1.24753 0.90031 0.92953 1.03003 1.67533 0.96275 1.35594 1.21563 1.17944 0.92701 0.86283 0.93429 1.19236 0.91213 0.93090 1.46419 0.89334 1.26911 1.03655 0.96537 0.92100 1.70238 1.34816 1.02824 1.33373 0.85160 0.76378 0.77546 0.79957 1.18380 1.19258 1.18399 1.24705 0.97735 0.98678 1.40459 1.19396 0.95413 0.92636 0.99627 1.82916 1.02565 1.04309 1.77625 1.74046 0.98071 1.13938 1.28569 1.84804 1.10081 1.33317 1.68824 0.88673 0.86941 0.87051 0.77896 0.72517 0.91218 0.94032 0.92915 0.93150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.58 10.45 71.24 0.74 0.17 16 2 C 0.00 -0.02 7.47 24.99 0.19 0.16 16 3 C -0.26 -6.10 11.11 22.53 0.25 -5.85 16 4 C 0.24 8.62 7.93 134.18 1.06 9.68 16 5 N -0.59 -24.25 5.55 -193.42 -1.07 -25.32 16 6 C 0.26 13.54 8.34 179.49 1.50 15.04 16 7 N -0.49 -28.28 8.50 -190.95 -1.62 -29.90 16 8 C 0.22 13.06 6.47 39.43 0.25 13.32 16 9 C -0.47 -26.94 8.89 23.30 0.21 -26.73 16 10 H 0.09 4.85 6.75 -2.91 -0.02 4.83 16 11 C 0.03 1.42 5.49 85.14 0.47 1.89 16 12 N -0.79 -44.23 11.68 21.78 0.25 -43.97 16 13 Si 0.99 40.32 29.56 68.60 2.03 42.35 16 14 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 15 H -0.27 -10.31 7.11 99.48 0.71 -9.60 16 16 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 17 C -0.49 -26.75 6.47 25.57 0.17 -26.59 16 18 C -0.01 -0.52 9.99 71.23 0.71 0.19 16 19 S 0.08 4.05 20.50 -56.49 -1.16 2.89 16 20 N -0.43 -15.97 9.50 -56.33 -0.54 -16.50 16 21 O 0.09 2.56 11.19 71.05 0.79 3.36 16 22 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 23 H 0.11 0.50 8.14 -2.39 -0.02 0.49 16 24 H 0.11 0.53 8.14 -2.38 -0.02 0.51 16 25 H 0.20 3.28 8.06 -2.91 -0.02 3.25 16 26 H 0.43 15.93 8.94 -92.71 -0.83 15.10 16 27 H 0.28 14.11 8.30 -92.70 -0.77 13.34 16 28 H 0.04 1.78 8.14 -2.39 -0.02 1.77 16 29 H 0.05 2.37 7.07 -2.39 -0.02 2.35 16 30 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -74.81 280.24 4.60 -70.21 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: 0.36 Total: 15.61 kcal Atomic # 6 Polarization: -24.26 SS G_CDS: 5.55 Total: -18.71 kcal Atomic # 7 Polarization: -112.72 SS G_CDS: -2.98 Total: -115.70 kcal Atomic # 8 Polarization: 2.56 SS G_CDS: 0.79 Total: 3.36 kcal Atomic # 14 Polarization: 40.32 SS G_CDS: 2.03 Total: 42.35 kcal Atomic # 16 Polarization: 4.05 SS G_CDS: -1.16 Total: 2.89 kcal Total: -74.81 4.60 -70.21 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259824423.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.710 kcal (2) G-P(sol) polarization free energy of solvation -74.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds