Wall clock time and date at job start Mon Mar 30 2020 06:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38061 * 120.02492 * 2 1 4 4 C 1.38613 * 120.71445 * 179.97438 * 3 2 1 5 5 C 1.38057 * 120.37239 * 0.11083 * 4 3 2 6 6 Cl 1.73605 * 120.21207 * 179.97438 * 5 4 3 7 7 C 1.39760 * 119.57253 * 359.97212 * 5 4 3 8 8 C 1.38922 * 120.02677 * 180.02562 * 2 1 3 9 9 N 1.38454 * 120.53851 * 359.81175 * 8 2 1 10 10 C 1.36735 * 120.04011 * 341.20907 * 9 8 2 11 11 H 1.08006 * 120.00293 * 322.24931 * 10 9 8 12 12 C 1.38912 * 120.00282 * 141.97068 * 10 9 8 13 13 N 1.31494 * 119.99656 * 351.43299 * 12 10 9 14 14 Si 1.86803 * 120.00287 * 171.43742 * 12 10 9 15 15 H 1.48497 * 109.46990 * 90.00168 * 14 12 10 16 16 H 1.48500 * 109.46875 * 209.99872 * 14 12 10 17 17 H 1.48491 * 109.46865 * 330.00136 * 14 12 10 18 18 C 1.46778 * 119.91982 * 161.48406 * 9 8 2 19 19 C 1.53128 * 109.07471 * 47.95309 * 18 9 8 20 20 C 1.46935 * 120.85935 * 179.79451 * 7 5 4 21 21 O 1.21339 * 121.25431 * 345.67765 * 20 7 5 22 22 H 1.08996 * 109.47276 * 262.82901 * 1 2 3 23 23 H 1.09001 * 109.47476 * 22.83427 * 1 2 3 24 24 H 1.09006 * 109.47229 * 142.82843 * 1 2 3 25 25 H 1.08003 * 119.64524 * 359.97438 * 3 2 1 26 26 H 1.07994 * 119.81256 * 180.08704 * 4 3 2 27 27 H 0.97003 * 120.00514 * 179.97438 * 13 12 10 28 28 H 1.09002 * 109.57363 * 167.85115 * 18 9 8 29 29 H 1.08997 * 109.58028 * 288.23962 * 18 9 8 30 30 H 1.08999 * 109.87224 * 183.49337 * 19 18 9 31 31 H 1.09003 * 109.62711 * 62.69636 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1953 0.0000 4 6 3.5838 1.2120 0.0005 5 6 4.2961 0.0294 -0.0012 6 17 6.0320 0.0552 -0.0012 7 6 3.6108 -1.1886 -0.0030 8 6 2.2021 -1.2028 -0.0005 9 7 1.5217 -2.4086 0.0028 10 6 0.2105 -2.4536 0.3879 11 1 -0.1355 -1.8314 1.2001 12 6 -0.6780 -3.2953 -0.2693 13 7 -0.3038 -3.9206 -1.3638 14 14 -2.4042 -3.5386 0.4017 15 1 -3.3132 -2.5249 -0.1910 16 1 -2.8844 -4.8994 0.0509 17 1 -2.3874 -3.3851 1.8786 18 6 2.2114 -3.6395 -0.4016 19 6 3.5583 -3.7195 0.3224 20 6 4.3405 -2.4640 -0.0094 21 8 5.5246 -2.5105 -0.2699 22 1 -0.3633 -0.1283 1.0196 23 1 -0.3634 0.9471 -0.3988 24 1 -0.3634 -0.8189 -0.6209 25 1 1.6524 2.1275 -0.0004 26 1 4.1094 2.1554 0.0019 27 1 -0.9240 -4.5087 -1.8226 28 1 1.6026 -4.5036 -0.1354 29 1 2.3798 -3.6269 -1.4785 30 1 4.1088 -4.5976 -0.0152 31 1 3.3928 -3.7777 1.3982 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259849361.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:50 Heat of formation + Delta-G solvation = -14.428722 kcal Electronic energy + Delta-G solvation = -18182.601722 eV Core-core repulsion = 15261.626820 eV Total energy + Delta-G solvation = -2920.974902 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.43503 -39.24722 -38.07087 -36.95721 -34.64031 -33.48988 -31.66918 -30.66574 -28.24822 -26.09369 -24.65477 -24.11845 -21.94223 -19.97431 -19.37207 -18.03894 -17.09237 -17.02530 -16.55489 -15.79252 -15.41785 -15.37382 -15.14706 -14.71172 -14.50596 -13.96091 -13.68037 -13.49849 -13.16394 -13.08779 -12.78018 -12.66894 -12.51293 -12.19333 -12.02906 -11.97088 -11.92595 -11.75117 -10.82465 -10.45606 -10.21890 -9.47700 -8.53395 -8.22471 -5.85605 -0.09368 0.70861 1.31020 1.47814 1.49577 1.58623 1.59200 2.24938 2.81567 2.94297 3.13465 3.31261 4.03185 4.14211 4.22161 4.34228 4.37235 4.57424 4.67093 4.86639 4.91949 4.98100 5.04645 5.09481 5.18713 5.37262 5.43832 5.52234 5.63899 5.83052 5.94505 6.23808 6.61678 6.73522 7.21276 7.60347 8.66748 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.027682 B = 0.007642 C = 0.006204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.241239 B = 3663.065777 C = 4512.006135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.174 4.174 3 C -0.037 4.037 4 C -0.218 4.218 5 C 0.052 3.948 6 Cl -0.070 7.070 7 C -0.318 4.318 8 C 0.243 3.757 9 N -0.439 5.439 10 C -0.317 4.317 11 H 0.106 0.894 12 C -0.002 4.002 13 N -0.894 5.894 14 Si 0.980 3.020 15 H -0.269 1.269 16 H -0.285 1.285 17 H -0.260 1.260 18 C 0.155 3.845 19 C -0.174 4.174 20 C 0.396 3.604 21 O -0.494 6.494 22 H 0.062 0.938 23 H 0.061 0.939 24 H 0.071 0.929 25 H 0.156 0.844 26 H 0.144 0.856 27 H 0.274 0.726 28 H 0.088 0.912 29 H 0.037 0.963 30 H 0.110 0.890 31 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.166 5.103 3.403 6.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.178 4.178 3 C -0.057 4.057 4 C -0.239 4.239 5 C 0.024 3.976 6 Cl -0.041 7.041 7 C -0.326 4.326 8 C 0.122 3.878 9 N -0.125 5.125 10 C -0.445 4.445 11 H 0.124 0.876 12 C -0.205 4.205 13 N -0.529 5.529 14 Si 0.804 3.196 15 H -0.195 1.195 16 H -0.210 1.210 17 H -0.184 1.184 18 C 0.032 3.968 19 C -0.213 4.213 20 C 0.279 3.721 21 O -0.373 6.373 22 H 0.080 0.920 23 H 0.080 0.920 24 H 0.090 0.910 25 H 0.174 0.826 26 H 0.162 0.838 27 H 0.084 0.916 28 H 0.106 0.894 29 H 0.056 0.944 30 H 0.128 0.872 31 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 0.661 4.596 3.112 5.589 hybrid contribution -0.530 -0.492 -0.043 0.724 sum 0.131 4.104 3.068 5.126 Atomic orbital electron populations 1.20963 0.90052 1.01832 1.01908 1.19740 0.97295 0.91213 1.09560 1.21093 0.92864 0.97415 0.94325 1.20721 0.94171 0.96023 1.13017 1.20875 0.83695 0.94217 0.98782 1.98324 1.10478 1.98834 1.96453 1.19462 0.92555 0.94247 1.26382 1.18216 0.89194 0.87847 0.92497 1.42590 1.09764 1.02301 1.57801 1.19938 0.83691 1.26005 1.14833 0.87643 1.26240 1.02941 0.96845 0.94477 1.70033 1.38052 1.28366 1.16454 0.85089 0.77678 0.77657 0.79203 1.19476 1.21046 1.18362 1.21146 0.90216 0.88874 0.96607 1.22650 0.97416 0.97634 1.03560 1.22434 0.87378 0.90552 0.71719 1.90479 1.17716 1.89262 1.39876 0.91957 0.91971 0.91048 0.82621 0.83775 0.91645 0.89357 0.94420 0.87207 0.87743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.22 8.14 71.23 0.58 -2.64 16 2 C -0.17 -6.65 5.86 -19.74 -0.12 -6.77 16 3 C -0.04 -1.19 9.64 22.32 0.22 -0.98 16 4 C -0.22 -7.27 9.82 22.32 0.22 -7.05 16 5 C 0.05 2.02 6.35 22.59 0.14 2.17 16 6 Cl -0.07 -2.59 26.34 -2.72 -0.07 -2.66 16 7 C -0.32 -13.62 5.85 -19.99 -0.12 -13.73 16 8 C 0.24 10.53 6.32 38.91 0.25 10.78 16 9 N -0.44 -19.78 2.88 -510.16 -1.47 -21.25 16 10 C -0.32 -14.17 5.86 84.09 0.49 -13.68 16 11 H 0.11 4.53 5.65 -2.91 -0.02 4.51 16 12 C 0.00 -0.07 4.74 84.90 0.40 0.34 16 13 N -0.89 -43.07 11.55 21.66 0.25 -42.82 16 14 Si 0.98 35.72 29.56 68.60 2.03 37.75 16 15 H -0.27 -9.64 7.11 99.48 0.71 -8.93 16 16 H -0.28 -10.53 7.11 99.48 0.71 -9.83 16 17 H -0.26 -9.09 7.11 99.48 0.71 -8.38 16 18 C 0.16 6.65 4.94 86.37 0.43 7.07 16 19 C -0.17 -6.53 6.35 30.18 0.19 -6.34 16 20 C 0.40 16.86 6.84 28.25 0.19 17.06 16 21 O -0.49 -22.24 15.23 -3.21 -0.05 -22.29 16 22 H 0.06 2.09 6.76 -2.39 -0.02 2.08 16 23 H 0.06 1.81 8.03 -2.39 -0.02 1.79 16 24 H 0.07 2.98 5.53 -2.38 -0.01 2.96 16 25 H 0.16 3.78 8.05 -2.91 -0.02 3.75 16 26 H 0.14 3.96 8.06 -2.91 -0.02 3.94 16 27 H 0.27 12.62 8.31 -92.71 -0.77 11.85 16 28 H 0.09 3.89 6.84 -2.39 -0.02 3.87 16 29 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.11 3.63 8.14 -2.39 -0.02 3.61 16 31 H 0.10 3.67 8.14 -2.39 -0.02 3.65 16 Total: -1.00 -53.16 269.26 4.73 -48.43 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: 1.16 Total: 16.62 kcal Atomic # 6 Polarization: -16.65 SS G_CDS: 2.88 Total: -13.78 kcal Atomic # 7 Polarization: -62.85 SS G_CDS: -1.22 Total: -64.07 kcal Atomic # 8 Polarization: -22.24 SS G_CDS: -0.05 Total: -22.29 kcal Atomic # 14 Polarization: 35.72 SS G_CDS: 2.03 Total: 37.75 kcal Atomic # 17 Polarization: -2.59 SS G_CDS: -0.07 Total: -2.66 kcal Total: -53.16 4.73 -48.43 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259849361.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.005 kcal (2) G-P(sol) polarization free energy of solvation -53.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds