Wall clock time and date at job start Mon Mar 30 2020 06:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31496 * 1 3 3 Si 1.86797 * 119.99875 * 2 1 4 4 H 1.48501 * 109.47168 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47136 * 299.99937 * 3 2 1 6 6 H 1.48499 * 109.47176 * 60.00112 * 3 2 1 7 7 C 1.38917 * 119.99931 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99621 * 179.97438 * 7 2 1 9 9 N 1.36718 * 119.99689 * 359.97438 * 7 2 1 10 10 C 1.46410 * 120.60900 * 179.97438 * 9 7 2 11 11 C 1.51872 * 111.34428 * 94.02729 * 10 9 7 12 12 C 1.51735 * 113.00956 * 66.73853 * 11 10 9 13 13 C 1.51104 * 110.57828 * 294.99793 * 12 11 10 14 14 O 1.21325 * 120.99904 * 261.02079 * 13 12 11 15 15 C 1.47114 * 118.00818 * 81.04532 * 13 12 11 16 16 C 1.39583 * 121.35145 * 115.54639 * 15 13 12 17 17 C 1.37889 * 119.46258 * 179.88863 * 16 15 13 18 18 C 1.38725 * 120.52778 * 0.02562 * 17 16 15 19 19 C 1.38176 * 120.68485 * 0.05812 * 18 17 16 20 20 Cl 1.73594 * 120.17224 * 179.97438 * 19 18 17 21 21 C 1.38884 * 119.65571 * 359.95864 * 19 18 17 22 22 H 0.97002 * 119.99996 * 359.97438 * 1 2 3 23 23 H 1.09005 * 109.10729 * 214.50872 * 10 9 7 24 24 H 1.09003 * 109.10966 * 333.60835 * 10 9 7 25 25 H 1.09000 * 108.77967 * 187.65382 * 11 10 9 26 26 H 1.09000 * 108.77226 * 305.83040 * 11 10 9 27 27 H 1.08994 * 109.25733 * 55.28552 * 12 11 10 28 28 H 1.09005 * 109.25198 * 174.75867 * 12 11 10 29 29 H 1.07999 * 120.26763 * 359.90522 * 16 15 13 30 30 H 1.08005 * 119.73671 * 180.28200 * 17 16 15 31 31 H 1.08004 * 119.65594 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2489 1.6177 0.0000 4 1 3.7089 1.3464 -0.0006 5 1 1.8902 2.3964 -1.2125 6 1 1.8902 2.3964 1.2125 7 6 2.0095 -1.2031 -0.0005 8 1 3.0895 -1.2030 -0.0010 9 7 1.3259 -2.3870 -0.0005 10 6 2.0443 -3.6627 -0.0017 11 6 2.2301 -4.1938 1.4090 12 6 0.9231 -4.5886 2.0711 13 6 0.0434 -3.3769 2.2741 14 8 -0.0120 -2.8181 3.3496 15 6 -0.7444 -2.8954 1.1288 16 6 -2.1399 -2.9201 1.1455 17 6 -2.8396 -2.4569 0.0513 18 6 -2.1675 -1.9695 -1.0602 19 6 -0.7864 -1.9402 -1.0923 20 17 0.0410 -1.3282 -2.4902 21 6 -0.0637 -2.4027 -0.0002 22 1 -0.4850 0.8401 0.0004 23 1 1.4794 -4.3899 -0.5851 24 1 3.0230 -3.5207 -0.4602 25 1 2.8824 -5.0662 1.3725 26 1 2.7109 -3.4242 2.0130 27 1 0.4031 -5.3085 1.4391 28 1 1.1337 -5.0453 3.0382 29 1 -2.6674 -3.2987 2.0085 30 1 -3.9195 -2.4697 0.0612 31 1 -2.7296 -1.6098 -1.9093 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259853623.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:52 Heat of formation + Delta-G solvation = 10.549908 kcal Electronic energy + Delta-G solvation = -18714.030870 eV Core-core repulsion = 15794.139123 eV Total energy + Delta-G solvation = -2919.891747 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.50477 -37.40971 -35.91572 -34.89333 -33.34022 -31.00061 -30.01773 -28.91299 -26.42168 -23.94221 -23.33922 -21.37810 -20.11208 -18.76666 -17.69230 -16.24510 -15.56298 -14.85621 -14.57699 -14.32600 -13.95681 -13.72791 -13.29763 -13.22366 -12.85039 -12.41627 -11.97829 -11.60698 -11.46739 -11.20827 -10.95485 -10.84838 -10.53422 -10.46438 -10.20244 -10.18350 -10.03521 -9.58902 -9.13396 -8.77720 -7.84021 -7.59680 -7.09050 -5.67590 -3.54141 2.14608 2.60419 2.94541 3.28217 3.31702 3.35823 3.68189 4.22858 4.76017 4.86527 5.02266 5.18726 5.32124 5.51364 5.69879 5.88981 6.00991 6.09060 6.17062 6.25831 6.27401 6.39201 6.55407 6.67884 6.85698 6.94719 7.27995 7.36249 7.46556 7.60794 7.81137 8.02880 8.29678 8.93423 9.41423 9.77868 10.93814 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.016856 B = 0.012092 C = 0.009686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.768707 B = 2315.092676 C = 2890.119186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.002 3.998 3 Si 0.918 3.082 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.287 1.287 7 C -0.248 4.248 8 H 0.091 0.909 9 N -0.528 5.528 10 C 0.137 3.863 11 C -0.133 4.133 12 C -0.159 4.159 13 C 0.431 3.569 14 O -0.467 6.467 15 C -0.203 4.203 16 C -0.086 4.086 17 C -0.167 4.167 18 C -0.107 4.107 19 C 0.040 3.960 20 Cl -0.090 7.090 21 C 0.285 3.715 22 H 0.265 0.735 23 H 0.052 0.948 24 H 0.069 0.931 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.104 0.896 30 H 0.106 0.894 31 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.398 -7.736 -2.114 8.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.198 4.198 3 Si 0.747 3.253 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.213 1.213 7 C -0.374 4.374 8 H 0.109 0.891 9 N -0.233 5.233 10 C 0.011 3.989 11 C -0.173 4.173 12 C -0.198 4.198 13 C 0.308 3.692 14 O -0.341 6.341 15 C -0.208 4.208 16 C -0.105 4.105 17 C -0.188 4.188 18 C -0.128 4.128 19 C 0.007 3.993 20 Cl -0.062 7.062 21 C 0.179 3.821 22 H 0.077 0.923 23 H 0.071 0.929 24 H 0.087 0.913 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.102 0.898 28 H 0.096 0.904 29 H 0.122 0.878 30 H 0.124 0.876 31 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -0.227 -7.144 -1.666 7.339 hybrid contribution 0.376 1.236 -0.066 1.293 sum 0.149 -5.908 -1.732 6.159 Atomic orbital electron populations 1.69763 1.04935 1.25726 1.49768 1.24882 0.95661 0.98546 1.00739 0.85935 0.78845 0.82959 0.77553 1.20153 1.21149 1.21305 1.19538 0.91369 0.82212 1.44264 0.89131 1.41764 1.00201 1.02942 1.78421 1.20910 0.97166 0.86566 0.94217 1.21476 0.95308 1.01153 0.99319 1.21906 0.97757 0.97800 1.02294 1.22334 0.77858 0.82657 0.86378 1.90468 1.59487 1.55420 1.28733 1.20148 0.93993 1.11981 0.94675 1.20405 0.91702 1.00859 0.97561 1.20299 0.97964 1.05975 0.94525 1.20573 0.92205 1.01629 0.98383 1.20338 0.91005 0.99926 0.88045 1.98245 1.80073 1.87232 1.40628 1.16452 0.83809 0.92678 0.89145 0.92277 0.92923 0.91301 0.91407 0.91410 0.89792 0.90397 0.87833 0.87577 0.87659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.11 8.02 55.50 0.45 -22.66 16 2 C 0.00 0.04 4.53 -17.44 -0.08 -0.04 16 3 Si 0.92 21.21 29.55 -169.99 -5.02 16.19 16 4 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.25 -6.17 9.11 -15.12 -0.14 -6.30 16 8 H 0.09 2.18 7.82 -52.49 -0.41 1.77 16 9 N -0.53 -12.06 2.02 -113.49 -0.23 -12.29 16 10 C 0.14 2.47 5.81 -4.66 -0.03 2.44 16 11 C -0.13 -2.15 5.63 -27.95 -0.16 -2.31 16 12 C -0.16 -2.64 5.74 -28.33 -0.16 -2.80 16 13 C 0.43 9.30 5.85 -30.51 -0.18 9.12 16 14 O -0.47 -11.53 17.92 5.52 0.10 -11.43 16 15 C -0.20 -4.55 5.53 -104.85 -0.58 -5.13 16 16 C -0.09 -1.76 9.86 -39.21 -0.39 -2.15 16 17 C -0.17 -3.26 10.02 -39.53 -0.40 -3.65 16 18 C -0.11 -2.23 9.81 -39.42 -0.39 -2.61 16 19 C 0.04 0.92 3.98 -39.37 -0.16 0.77 16 20 Cl -0.09 -2.01 26.04 -51.86 -1.35 -3.36 16 21 C 0.28 6.64 3.59 -83.45 -0.30 6.34 16 22 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 23 H 0.05 0.88 8.04 -51.93 -0.42 0.46 16 24 H 0.07 1.16 8.01 -51.93 -0.42 0.75 16 25 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 26 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 27 H 0.08 1.21 8.13 -51.93 -0.42 0.79 16 28 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 29 H 0.10 1.91 8.06 -52.49 -0.42 1.48 16 30 H 0.11 1.74 8.06 -52.48 -0.42 1.31 16 31 H 0.11 1.97 8.06 -52.48 -0.42 1.55 16 LS Contribution 273.26 15.07 4.12 4.12 Total: -1.00 -29.12 273.26 -8.23 -37.34 By element: Atomic # 1 Polarization: 1.74 SS G_CDS: -3.34 Total: -1.60 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: -2.95 Total: -6.31 kcal Atomic # 7 Polarization: -35.17 SS G_CDS: 0.22 Total: -34.95 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: 0.10 Total: -11.43 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 17 Polarization: -2.01 SS G_CDS: -1.35 Total: -3.36 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -29.12 -8.23 -37.34 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259853623.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.893 kcal (2) G-P(sol) polarization free energy of solvation -29.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds