Wall clock time and date at job start Mon Mar 30 2020 06:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31496 * 1 3 3 Si 1.86797 * 119.99875 * 2 1 4 4 H 1.48501 * 109.47168 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47136 * 299.99937 * 3 2 1 6 6 H 1.48499 * 109.47176 * 60.00112 * 3 2 1 7 7 C 1.38917 * 119.99931 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99621 * 179.97438 * 7 2 1 9 9 N 1.36718 * 119.99689 * 359.97438 * 7 2 1 10 10 C 1.46410 * 120.60900 * 179.97438 * 9 7 2 11 11 C 1.51872 * 111.34428 * 94.02729 * 10 9 7 12 12 C 1.51735 * 113.00956 * 66.73853 * 11 10 9 13 13 C 1.51104 * 110.57828 * 294.99793 * 12 11 10 14 14 O 1.21325 * 120.99904 * 261.02079 * 13 12 11 15 15 C 1.47114 * 118.00818 * 81.04532 * 13 12 11 16 16 C 1.39583 * 121.35145 * 115.54639 * 15 13 12 17 17 C 1.37889 * 119.46258 * 179.88863 * 16 15 13 18 18 C 1.38725 * 120.52778 * 0.02562 * 17 16 15 19 19 C 1.38176 * 120.68485 * 0.05812 * 18 17 16 20 20 Cl 1.73594 * 120.17224 * 179.97438 * 19 18 17 21 21 C 1.38884 * 119.65571 * 359.95864 * 19 18 17 22 22 H 0.97002 * 119.99996 * 359.97438 * 1 2 3 23 23 H 1.09005 * 109.10729 * 214.50872 * 10 9 7 24 24 H 1.09003 * 109.10966 * 333.60835 * 10 9 7 25 25 H 1.09000 * 108.77967 * 187.65382 * 11 10 9 26 26 H 1.09000 * 108.77226 * 305.83040 * 11 10 9 27 27 H 1.08994 * 109.25733 * 55.28552 * 12 11 10 28 28 H 1.09005 * 109.25198 * 174.75867 * 12 11 10 29 29 H 1.07999 * 120.26763 * 359.90522 * 16 15 13 30 30 H 1.08005 * 119.73671 * 180.28200 * 17 16 15 31 31 H 1.08004 * 119.65594 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2489 1.6177 0.0000 4 1 3.7089 1.3464 -0.0006 5 1 1.8902 2.3964 -1.2125 6 1 1.8902 2.3964 1.2125 7 6 2.0095 -1.2031 -0.0005 8 1 3.0895 -1.2030 -0.0010 9 7 1.3259 -2.3870 -0.0005 10 6 2.0443 -3.6627 -0.0017 11 6 2.2301 -4.1938 1.4090 12 6 0.9231 -4.5886 2.0711 13 6 0.0434 -3.3769 2.2741 14 8 -0.0120 -2.8181 3.3496 15 6 -0.7444 -2.8954 1.1288 16 6 -2.1399 -2.9201 1.1455 17 6 -2.8396 -2.4569 0.0513 18 6 -2.1675 -1.9695 -1.0602 19 6 -0.7864 -1.9402 -1.0923 20 17 0.0410 -1.3282 -2.4902 21 6 -0.0637 -2.4027 -0.0002 22 1 -0.4850 0.8401 0.0004 23 1 1.4794 -4.3899 -0.5851 24 1 3.0230 -3.5207 -0.4602 25 1 2.8824 -5.0662 1.3725 26 1 2.7109 -3.4242 2.0130 27 1 0.4031 -5.3085 1.4391 28 1 1.1337 -5.0453 3.0382 29 1 -2.6674 -3.2987 2.0085 30 1 -3.9195 -2.4697 0.0612 31 1 -2.7296 -1.6098 -1.9093 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259853623.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:51 Heat of formation + Delta-G solvation = -4.419735 kcal Electronic energy + Delta-G solvation = -18714.680003 eV Core-core repulsion = 15794.139123 eV Total energy + Delta-G solvation = -2920.540880 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.13625 -39.11819 -37.49265 -36.59316 -34.95055 -32.70954 -31.64694 -30.53655 -28.03467 -25.63841 -24.92603 -22.97198 -21.68278 -20.36099 -19.42122 -17.83229 -17.22363 -16.55393 -16.32197 -15.93387 -15.48900 -15.43203 -14.93028 -14.86247 -14.35812 -13.97983 -13.53917 -13.24373 -13.14428 -12.84730 -12.70164 -12.49348 -12.14028 -11.96301 -11.95252 -11.79818 -11.62416 -11.30163 -10.88285 -10.41133 -9.57610 -9.25958 -8.85092 -7.51805 -5.42107 0.48285 0.97035 1.29119 1.42668 1.44835 1.51213 1.99403 2.41202 3.12294 3.31524 3.32506 3.45427 3.98727 4.17814 4.29432 4.36477 4.64462 4.71140 4.76425 4.82954 4.94643 5.00680 5.13325 5.23229 5.29554 5.39986 5.47744 5.68857 5.81151 5.91660 6.09285 6.32565 6.66431 7.07665 7.69260 7.97383 9.02051 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.016856 B = 0.012092 C = 0.009686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.768707 B = 2315.092676 C = 2890.119186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C -0.040 4.040 3 Si 0.959 3.041 4 H -0.265 1.265 5 H -0.291 1.291 6 H -0.302 1.302 7 C -0.249 4.249 8 H 0.093 0.907 9 N -0.545 5.545 10 C 0.128 3.872 11 C -0.124 4.124 12 C -0.152 4.152 13 C 0.425 3.575 14 O -0.510 6.510 15 C -0.224 4.224 16 C -0.095 4.095 17 C -0.156 4.156 18 C -0.115 4.115 19 C 0.023 3.977 20 Cl -0.095 7.095 21 C 0.272 3.728 22 H 0.251 0.749 23 H 0.067 0.933 24 H 0.077 0.923 25 H 0.114 0.886 26 H 0.041 0.959 27 H 0.111 0.889 28 H 0.098 0.902 29 H 0.123 0.877 30 H 0.142 0.858 31 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.488 -9.501 -2.251 9.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.237 4.237 3 Si 0.789 3.211 4 H -0.189 1.189 5 H -0.218 1.218 6 H -0.229 1.229 7 C -0.376 4.376 8 H 0.111 0.889 9 N -0.252 5.252 10 C 0.005 3.995 11 C -0.163 4.163 12 C -0.190 4.190 13 C 0.305 3.695 14 O -0.388 6.388 15 C -0.229 4.229 16 C -0.114 4.114 17 C -0.176 4.176 18 C -0.135 4.135 19 C -0.010 4.010 20 Cl -0.066 7.066 21 C 0.168 3.832 22 H 0.062 0.938 23 H 0.085 0.915 24 H 0.096 0.904 25 H 0.133 0.867 26 H 0.060 0.940 27 H 0.129 0.871 28 H 0.117 0.883 29 H 0.141 0.859 30 H 0.160 0.840 31 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.308 -8.959 -1.823 9.147 hybrid contribution 0.314 1.700 -0.047 1.729 sum 0.006 -7.259 -1.870 7.496 Atomic orbital electron populations 1.69963 1.05554 1.24848 1.52245 1.25358 0.96210 1.00393 1.01730 0.85279 0.78763 0.80765 0.76319 1.18939 1.21811 1.22936 1.19704 0.91604 0.83191 1.43131 0.88934 1.41937 1.00302 1.03758 1.79230 1.21157 0.97399 0.85158 0.95813 1.21423 0.95536 1.02127 0.97221 1.21926 0.97044 0.95838 1.04151 1.23045 0.77622 0.83596 0.85257 1.90448 1.60996 1.57245 1.30105 1.20535 0.95122 1.12288 0.94922 1.20770 0.91374 1.00683 0.98618 1.20717 0.99779 1.03760 0.93335 1.20905 0.91800 1.01319 0.99491 1.20637 0.91916 1.00193 0.88273 1.98230 1.80335 1.87396 1.40663 1.16687 0.84352 0.92824 0.89374 0.93765 0.91454 0.90414 0.86749 0.94016 0.87097 0.88329 0.85908 0.84011 0.85947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -47.91 8.02 21.66 0.17 -47.74 16 2 C -0.04 -2.07 4.53 84.91 0.38 -1.69 16 3 Si 0.96 44.10 29.55 68.60 2.03 46.13 16 4 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 5 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 6 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 7 C -0.25 -12.35 9.11 84.09 0.77 -11.59 16 8 H 0.09 4.42 7.82 -2.91 -0.02 4.40 16 9 N -0.55 -24.45 2.02 -512.98 -1.04 -25.48 16 10 C 0.13 4.37 5.81 86.03 0.50 4.87 16 11 C -0.12 -3.64 5.63 29.81 0.17 -3.47 16 12 C -0.15 -4.58 5.74 29.56 0.17 -4.41 16 13 C 0.42 17.85 5.85 28.15 0.16 18.01 16 14 O -0.51 -25.17 17.92 -3.17 -0.06 -25.22 16 15 C -0.22 -9.78 5.53 -20.01 -0.11 -9.90 16 16 C -0.10 -3.73 9.86 22.51 0.22 -3.51 16 17 C -0.16 -5.69 10.02 22.30 0.22 -5.47 16 18 C -0.11 -4.58 9.81 22.37 0.22 -4.36 16 19 C 0.02 1.03 3.98 22.41 0.09 1.12 16 20 Cl -0.09 -4.18 26.04 -2.72 -0.07 -4.25 16 21 C 0.27 12.46 3.59 38.78 0.14 12.60 16 22 H 0.25 13.78 8.31 -92.71 -0.77 13.01 16 23 H 0.07 2.07 8.04 -2.38 -0.02 2.05 16 24 H 0.08 2.46 8.01 -2.39 -0.02 2.44 16 25 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 26 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.11 2.76 8.13 -2.39 -0.02 2.74 16 28 H 0.10 2.59 8.14 -2.38 -0.02 2.57 16 29 H 0.12 4.26 8.06 -2.91 -0.02 4.23 16 30 H 0.14 4.10 8.06 -2.91 -0.02 4.08 16 31 H 0.12 4.36 8.06 -2.91 -0.02 4.34 16 Total: -1.00 -63.19 273.26 5.11 -58.07 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: 1.14 Total: 6.29 kcal Atomic # 6 Polarization: -10.72 SS G_CDS: 2.94 Total: -7.79 kcal Atomic # 7 Polarization: -72.36 SS G_CDS: -0.86 Total: -73.22 kcal Atomic # 8 Polarization: -25.17 SS G_CDS: -0.06 Total: -25.22 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Atomic # 17 Polarization: -4.18 SS G_CDS: -0.07 Total: -4.25 kcal Total: -63.19 5.11 -58.07 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259853623.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.655 kcal (2) G-P(sol) polarization free energy of solvation -63.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds