Wall clock time and date at job start Mon Mar 30 2020 06:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29785 * 121.58180 * 2 1 4 4 S 1.69531 * 107.50097 * 180.22830 * 3 2 1 5 5 C 1.72021 * 95.90503 * 359.72952 * 4 3 2 6 6 C 1.50696 * 127.26039 * 179.97438 * 5 4 3 7 7 C 1.36338 * 105.47875 * 359.97438 * 5 4 3 8 8 C 1.48310 * 122.85950 * 180.02562 * 7 5 4 9 9 N 1.30836 * 126.42640 * 0.02747 * 8 7 5 10 10 O 1.21286 * 110.08519 * 179.68664 * 9 8 7 11 11 C 1.33665 * 110.04006 * 0.46758 * 10 9 8 12 12 C 1.50700 * 126.42722 * 179.80352 * 11 10 9 13 13 C 1.50702 * 109.46869 * 269.68502 * 12 11 10 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 12 11 15 15 C 1.37884 * 119.99942 * 179.72213 * 13 12 11 16 16 N 1.31514 * 119.99985 * 180.27663 * 15 13 12 17 17 Si 1.86800 * 119.99777 * 0.28166 * 15 13 12 18 18 H 1.48498 * 109.47109 * 89.99834 * 17 15 13 19 19 H 1.48507 * 109.46754 * 209.99574 * 17 15 13 20 20 H 1.48498 * 109.47278 * 329.99405 * 17 15 13 21 21 N 1.30971 * 107.13906 * 359.53632 * 11 10 9 22 22 H 1.08999 * 109.47461 * 270.27245 * 1 2 3 23 23 H 1.09002 * 109.46936 * 30.27137 * 1 2 3 24 24 H 1.08997 * 109.47306 * 150.26906 * 1 2 3 25 25 H 1.09002 * 109.47385 * 270.02135 * 6 5 4 26 26 H 1.08999 * 109.47167 * 30.02579 * 6 5 4 27 27 H 1.09006 * 109.47212 * 150.02089 * 6 5 4 28 28 H 1.09004 * 109.47210 * 149.68795 * 12 11 10 29 29 H 1.08994 * 109.47551 * 29.68448 * 12 11 10 30 30 H 0.96996 * 119.99730 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1867 1.1056 0.0000 4 16 3.8311 0.6932 -0.0064 5 6 3.5865 -1.0095 -0.0011 6 6 4.6439 -2.0832 -0.0038 7 6 2.2342 -1.1828 0.0061 8 6 1.5944 -2.5208 0.0131 9 7 2.2090 -3.6759 0.0139 10 8 1.3991 -4.5786 0.0265 11 6 0.1585 -4.0810 0.0250 12 6 -1.1234 -4.8733 0.0338 13 6 -1.5576 -5.1420 -1.3841 14 1 -0.9644 -4.7760 -2.2091 15 6 -2.7089 -5.8604 -1.6282 16 7 -3.0849 -6.0995 -2.8655 17 14 -3.7346 -6.4938 -0.2013 18 1 -4.7469 -5.4735 0.1721 19 1 -4.4209 -7.7479 -0.6034 20 1 -2.8516 -6.7639 0.9617 21 7 0.2662 -2.7758 0.0203 22 1 -0.3634 0.0049 1.0276 23 1 -0.3633 0.8876 -0.5181 24 1 -0.3634 -0.8924 -0.5096 25 1 4.8940 -2.3443 -1.0320 26 1 5.5353 -1.7165 0.5051 27 1 4.2672 -2.9655 0.5138 28 1 -1.8979 -4.3056 0.5496 29 1 -0.9622 -5.8197 0.5499 30 1 -3.8950 -6.6045 -3.0372 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259876801.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:07 Heat of formation + Delta-G solvation = 83.032213 kcal Electronic energy + Delta-G solvation = -17242.790046 eV Core-core repulsion = 14360.377825 eV Total energy + Delta-G solvation = -2882.412221 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.063 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -46.43039 -40.57737 -36.80555 -35.77816 -34.73666 -33.46389 -30.80171 -30.64872 -29.16918 -25.77051 -25.26803 -23.55944 -22.28042 -20.40638 -19.46130 -19.18201 -18.57126 -17.85813 -16.70894 -16.32451 -16.14379 -15.43055 -14.99837 -14.48458 -14.38908 -14.31999 -14.11213 -13.65254 -13.48200 -13.26115 -13.15417 -12.92679 -12.83282 -12.44941 -12.31185 -12.03478 -11.78351 -11.72415 -11.59002 -11.06910 -10.79997 -10.35047 -9.58458 -8.31627 -6.43367 -0.71477 0.13784 0.17308 0.61769 0.79500 1.48094 1.48832 1.59214 1.75904 1.96911 2.37921 2.60746 2.91397 3.07115 3.28380 3.83046 4.08912 4.21553 4.28705 4.51015 4.53165 4.61473 4.67831 4.76147 4.82260 4.88503 5.01878 5.11041 5.27372 5.35902 5.58069 6.11222 6.59702 7.15899 7.19967 8.84519 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.034774 B = 0.004831 C = 0.004508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.015394 B = 5794.259495 C = 6210.351419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.155 3.845 3 N -0.494 5.494 4 S 0.329 5.671 5 C -0.128 4.128 6 C -0.088 4.088 7 C -0.137 4.137 8 C 0.232 3.768 9 N -0.394 5.394 10 O 0.060 5.940 11 C 0.239 3.761 12 C 0.074 3.926 13 C -0.538 4.538 14 H 0.026 0.974 15 C 0.021 3.979 16 N -0.942 5.942 17 Si 0.952 3.048 18 H -0.262 1.262 19 H -0.284 1.284 20 H -0.228 1.228 21 N -0.500 5.500 22 H 0.092 0.908 23 H 0.086 0.914 24 H 0.092 0.908 25 H 0.097 0.903 26 H 0.112 0.888 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.205 9.006 9.659 17.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.023 4.023 3 N -0.315 5.315 4 S 0.485 5.515 5 C -0.260 4.260 6 C -0.146 4.146 7 C -0.155 4.155 8 C -0.040 4.040 9 N -0.107 5.107 10 O 0.007 5.993 11 C 0.020 3.980 12 C 0.035 3.965 13 C -0.576 4.576 14 H 0.044 0.956 15 C -0.178 4.178 16 N -0.580 5.580 17 Si 0.773 3.227 18 H -0.187 1.187 19 H -0.210 1.210 20 H -0.150 1.150 21 N -0.234 5.234 22 H 0.111 0.889 23 H 0.104 0.896 24 H 0.110 0.890 25 H 0.115 0.885 26 H 0.130 0.870 27 H 0.100 0.900 28 H 0.101 0.899 29 H 0.100 0.900 30 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 13.665 11.311 9.543 20.144 hybrid contribution -1.658 -2.105 -0.260 2.692 sum 12.008 9.206 9.284 17.752 Atomic orbital electron populations 1.20848 0.85043 1.04842 1.04640 1.21434 1.00102 0.86682 0.94042 1.76476 1.01655 1.25782 1.27602 1.83620 1.08985 0.92679 1.66257 1.26117 0.97241 1.04539 0.98136 1.20630 0.94798 0.94396 1.04784 1.17530 0.92061 0.89252 1.16696 1.23278 0.86579 0.93347 1.00801 1.74749 1.15498 0.96784 1.23711 1.85228 1.14848 1.32857 1.66404 1.29344 0.89718 0.88872 0.90044 1.18505 0.83963 0.95752 0.98298 1.20747 1.09917 1.36659 0.90307 0.95574 1.25883 0.98048 0.94866 0.99010 1.70026 1.25280 1.40639 1.22065 0.85651 0.79341 0.78189 0.79550 1.18710 1.21011 1.15009 1.72047 1.15531 1.12426 1.23363 0.88914 0.89562 0.88977 0.88513 0.86981 0.90016 0.89916 0.89977 0.91848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.72 9.61 71.24 0.68 -2.03 16 2 C 0.16 4.80 6.74 43.01 0.29 5.09 16 3 N -0.49 -14.22 12.01 -51.65 -0.62 -14.84 16 4 S 0.33 7.25 23.70 -56.49 -1.34 5.91 16 5 C -0.13 -3.25 6.61 25.24 0.17 -3.08 16 6 C -0.09 -1.75 9.87 71.23 0.70 -1.05 16 7 C -0.14 -4.38 5.82 -20.89 -0.12 -4.50 16 8 C 0.23 8.66 7.73 137.23 1.06 9.72 16 9 N -0.39 -14.69 9.87 -59.01 -0.58 -15.27 16 10 O 0.06 2.39 11.29 74.65 0.84 3.24 16 11 C 0.24 9.81 7.68 88.36 0.68 10.49 16 12 C 0.07 3.08 4.67 29.10 0.14 3.22 16 13 C -0.54 -28.76 9.65 25.60 0.25 -28.51 16 14 H 0.03 1.61 7.98 -2.91 -0.02 1.59 16 15 C 0.02 1.13 5.47 84.66 0.46 1.59 16 16 N -0.94 -55.64 13.96 21.45 0.30 -55.34 16 17 Si 0.95 38.59 27.47 68.60 1.88 40.47 16 18 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 19 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 20 H -0.23 -7.94 6.54 99.48 0.65 -7.29 16 21 N -0.50 -20.07 8.67 -302.39 -2.62 -22.69 16 22 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 23 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 24 H 0.09 3.17 5.63 -2.39 -0.01 3.16 16 25 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 26 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.08 1.96 6.31 -2.38 -0.02 1.95 16 28 H 0.08 3.19 7.58 -2.38 -0.02 3.17 16 29 H 0.08 3.06 7.19 -2.39 -0.02 3.04 16 30 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 Total: -1.00 -63.69 277.16 3.30 -60.39 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: 1.13 Total: 7.20 kcal Atomic # 6 Polarization: -13.37 SS G_CDS: 4.31 Total: -9.06 kcal Atomic # 7 Polarization: -104.62 SS G_CDS: -3.53 Total: -108.14 kcal Atomic # 8 Polarization: 2.39 SS G_CDS: 0.84 Total: 3.24 kcal Atomic # 14 Polarization: 38.59 SS G_CDS: 1.88 Total: 40.47 kcal Atomic # 16 Polarization: 7.25 SS G_CDS: -1.34 Total: 5.91 kcal Total: -63.69 3.30 -60.39 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259876801.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.424 kcal (2) G-P(sol) polarization free energy of solvation -63.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds