Wall clock time and date at job start Mon Mar 30 2020 06:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.33824 * 122.45170 * 2 1 4 4 S 1.70618 * 110.95607 * 179.73130 * 3 2 1 5 5 C 1.75833 * 91.56153 * 359.97438 * 4 3 2 6 6 C 1.46586 * 125.45260 * 180.02562 * 5 4 3 7 7 O 1.21701 * 119.99684 * 179.97438 * 6 5 4 8 8 N 1.34773 * 120.00444 * 359.97198 * 6 5 4 9 9 C 1.47025 * 125.64409 * 359.70045 * 8 6 5 10 10 C 1.54339 * 107.26246 * 178.84490 * 9 8 6 11 11 C 1.55151 * 103.02211 * 338.13807 * 10 9 8 12 12 H 1.08997 * 111.03716 * 277.22300 * 11 10 9 13 13 C 1.50700 * 111.00895 * 153.38208 * 11 10 9 14 14 H 1.08007 * 119.99516 * 6.35013 * 13 11 10 15 15 C 1.37870 * 120.00617 * 186.35275 * 13 11 10 16 16 N 1.31522 * 119.99542 * 359.97438 * 15 13 11 17 17 Si 1.86795 * 120.00386 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.46997 * 59.99495 * 17 15 13 19 19 H 1.48498 * 109.47460 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46966 * 299.99941 * 17 15 13 21 21 C 1.47417 * 125.64968 * 179.97438 * 8 6 5 22 22 C 1.36645 * 109.08392 * 0.02562 * 5 4 3 23 23 H 1.09002 * 109.46859 * 90.02463 * 1 2 3 24 24 H 1.08998 * 109.47493 * 210.02718 * 1 2 3 25 25 H 1.09003 * 109.46946 * 330.02548 * 1 2 3 26 26 H 1.08000 * 124.51936 * 359.72533 * 3 2 1 27 27 H 1.08993 * 109.88047 * 298.38507 * 9 8 6 28 28 H 1.08998 * 109.88362 * 59.55570 * 9 8 6 29 29 H 1.09001 * 110.85038 * 219.66833 * 10 9 8 30 30 H 1.09001 * 110.66822 * 96.52013 * 10 9 8 31 31 H 0.97002 * 119.99909 * 180.02562 * 16 15 13 32 32 H 1.09001 * 110.36972 * 322.93487 * 21 8 6 33 33 H 1.09007 * 110.36832 * 85.26043 * 21 8 6 34 34 H 1.07999 * 123.34685 * 179.97438 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1293 0.0000 4 16 3.8970 0.7892 0.0075 5 6 3.5936 -0.9427 0.0114 6 6 4.6231 -1.9862 0.0190 7 8 4.3001 -3.1596 0.0217 8 7 5.9273 -1.6463 0.0230 9 6 6.4550 -0.2740 0.0142 10 6 7.9946 -0.3752 0.0529 11 6 8.2373 -1.7890 0.6441 12 1 8.1744 -1.7743 1.7321 13 6 9.5627 -2.3443 0.1900 14 1 10.2418 -1.7249 -0.3772 15 6 9.9084 -3.6427 0.4986 16 7 9.0816 -4.3968 1.1897 17 14 11.5515 -4.3307 -0.0636 18 1 12.6521 -3.5191 0.5154 19 1 11.6816 -5.7377 0.3931 20 1 11.6275 -4.2818 -1.5459 21 6 7.0608 -2.5887 0.0312 22 6 2.2446 -1.1600 0.0063 23 1 -0.3633 -0.0004 -1.0277 24 1 -0.3634 -0.8897 0.5142 25 1 -0.3633 0.8902 0.5135 26 1 1.8026 2.1232 -0.0043 27 1 6.1381 0.2392 -0.8935 28 1 6.0987 0.2658 0.8915 29 1 8.4177 0.3919 0.7016 30 1 8.4104 -0.3008 -0.9519 31 1 9.3250 -5.3102 1.4072 32 1 6.8287 -3.4559 0.6495 33 1 7.3027 -2.9001 -0.9850 34 1 1.8019 -2.1451 0.0069 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259886903.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:15 Heat of formation + Delta-G solvation = -10.618451 kcal Electronic energy + Delta-G solvation = -17544.970434 eV Core-core repulsion = 14762.037559 eV Total energy + Delta-G solvation = -2782.932875 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.44278 -38.10727 -36.54407 -33.07082 -31.23019 -30.33213 -28.37954 -27.63236 -25.55065 -23.79462 -22.17974 -19.95848 -19.36234 -18.80755 -17.47823 -16.59382 -15.78858 -15.44405 -15.13891 -14.49170 -14.15085 -13.90796 -13.48292 -13.16351 -12.77956 -12.53443 -12.20311 -12.10914 -12.01691 -11.88020 -11.77799 -11.48368 -10.96942 -10.84582 -10.60764 -10.42138 -9.93370 -9.54519 -9.33906 -9.07500 -8.78279 -8.54907 -8.34532 -7.88699 -6.11645 -4.17847 0.66250 1.60947 2.03495 2.45600 3.28247 3.34572 3.35533 3.58038 3.61541 4.36922 4.83643 4.94598 5.15406 5.22663 5.29666 5.37267 5.49519 5.53627 5.54981 5.76882 5.81388 5.92610 6.18395 6.36301 6.40169 6.44632 6.67986 6.80998 6.93652 6.99024 7.43385 7.64087 7.87308 8.15899 8.24341 8.65307 8.84878 9.48392 10.97583 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.045735 B = 0.004608 C = 0.004258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.070291 B = 6074.366193 C = 6574.812554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.117 4.117 3 C -0.266 4.266 4 S 0.216 5.784 5 C -0.244 4.244 6 C 0.589 3.411 7 O -0.539 6.539 8 N -0.609 5.609 9 C 0.088 3.912 10 C -0.123 4.123 11 C 0.047 3.953 12 H 0.040 0.960 13 C -0.521 4.521 14 H 0.062 0.938 15 C 0.065 3.935 16 N -0.885 5.885 17 Si 0.896 3.104 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.276 1.276 21 C 0.120 3.880 22 C -0.068 4.068 23 H 0.067 0.933 24 H 0.067 0.933 25 H 0.063 0.937 26 H 0.161 0.839 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.265 0.735 32 H 0.087 0.913 33 H 0.056 0.944 34 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.195 12.138 -2.214 17.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.130 4.130 3 C -0.403 4.403 4 S 0.485 5.515 5 C -0.364 4.364 6 C 0.376 3.624 7 O -0.419 6.419 8 N -0.341 5.341 9 C -0.037 4.037 10 C -0.161 4.161 11 C 0.027 3.973 12 H 0.058 0.942 13 C -0.559 4.559 14 H 0.080 0.920 15 C -0.139 4.139 16 N -0.522 5.522 17 Si 0.724 3.276 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.201 1.201 21 C 0.000 4.000 22 C -0.101 4.101 23 H 0.086 0.914 24 H 0.086 0.914 25 H 0.082 0.918 26 H 0.179 0.821 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.075 0.925 32 H 0.105 0.895 33 H 0.075 0.925 34 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -11.131 12.231 -2.126 16.674 hybrid contribution -0.592 -1.143 -0.296 1.321 sum -11.723 11.088 -2.422 16.317 Atomic orbital electron populations 1.20492 0.89894 1.02595 1.02142 1.18725 0.97604 0.91649 1.05067 1.25430 1.00934 1.02916 1.10994 1.83454 1.01756 0.98812 1.67435 1.24827 0.98118 0.97115 1.16362 1.16605 0.80782 0.87115 0.77850 1.90806 1.81038 1.18166 1.51904 1.48816 1.05401 1.09305 1.70546 1.22167 0.97532 0.83775 1.00189 1.22712 0.90427 1.00996 1.01993 1.19854 0.93186 0.88132 0.96092 0.94217 1.20919 1.01312 0.97639 1.36044 0.91981 1.25046 0.97160 0.97067 0.94584 1.69934 1.35906 1.08523 1.37805 0.86584 0.83841 0.78036 0.79135 1.20162 1.21223 1.20140 1.22786 0.83066 0.93106 1.01026 1.20597 0.91101 0.99794 0.98604 0.91402 0.91438 0.91770 0.82092 0.92049 0.91900 0.91376 0.91167 0.92516 0.89504 0.92546 0.83188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.82 10.13 36.00 0.36 -0.46 16 2 C -0.12 -1.42 5.78 -106.45 -0.62 -2.04 16 3 C -0.27 -3.00 10.67 29.18 0.31 -2.69 16 4 S 0.22 2.76 18.43 -107.50 -1.98 0.78 16 5 C -0.24 -4.09 6.38 -36.79 -0.23 -4.32 16 6 C 0.59 12.41 7.82 -12.90 -0.10 12.30 16 7 O -0.54 -13.21 17.10 5.19 0.09 -13.12 16 8 N -0.61 -12.75 3.33 -172.10 -0.57 -13.32 16 9 C 0.09 1.50 5.17 -3.05 -0.02 1.48 16 10 C -0.12 -2.30 6.39 -24.89 -0.16 -2.46 16 11 C 0.05 1.11 2.97 -89.63 -0.27 0.85 16 12 H 0.04 1.03 8.14 -51.93 -0.42 0.60 16 13 C -0.52 -13.59 8.55 -34.44 -0.29 -13.88 16 14 H 0.06 1.56 7.79 -52.48 -0.41 1.16 16 15 C 0.06 1.74 5.34 -17.82 -0.10 1.65 16 16 N -0.88 -25.07 12.06 55.43 0.67 -24.40 16 17 Si 0.90 20.70 29.54 -169.99 -5.02 15.68 16 18 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 19 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 21 C 0.12 2.93 5.65 -2.54 -0.01 2.91 16 22 C -0.07 -1.01 9.79 -40.44 -0.40 -1.41 16 23 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.07 0.57 8.13 -51.93 -0.42 0.14 16 25 H 0.06 0.48 8.12 -51.93 -0.42 0.06 16 26 H 0.16 1.37 8.06 -52.49 -0.42 0.95 16 27 H 0.06 0.92 7.01 -51.93 -0.36 0.55 16 28 H 0.06 0.97 6.80 -51.93 -0.35 0.62 16 29 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 30 H 0.07 1.28 8.03 -51.93 -0.42 0.86 16 31 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 32 H 0.09 2.40 7.33 -51.93 -0.38 2.02 16 33 H 0.06 1.43 8.03 -51.92 -0.42 1.01 16 34 H 0.15 2.19 8.06 -52.49 -0.42 1.77 16 LS Contribution 296.50 15.07 4.47 4.47 Total: -1.00 -30.22 296.50 -8.30 -38.51 By element: Atomic # 1 Polarization: 3.88 SS G_CDS: -4.43 Total: -0.55 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: -1.52 Total: -8.06 kcal Atomic # 7 Polarization: -37.81 SS G_CDS: 0.10 Total: -37.72 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: 0.09 Total: -13.12 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Atomic # 16 Polarization: 2.76 SS G_CDS: -1.98 Total: 0.78 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -30.22 -8.30 -38.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259886903.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.896 kcal (2) G-P(sol) polarization free energy of solvation -30.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds