Wall clock time and date at job start Mon Mar 30 2020 06:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.33824 * 122.45170 * 2 1 4 4 S 1.70618 * 110.95607 * 179.73130 * 3 2 1 5 5 C 1.75833 * 91.56153 * 359.97438 * 4 3 2 6 6 C 1.46586 * 125.45260 * 180.02562 * 5 4 3 7 7 O 1.21701 * 119.99684 * 179.97438 * 6 5 4 8 8 N 1.34773 * 120.00444 * 359.97198 * 6 5 4 9 9 C 1.47025 * 125.64409 * 359.70045 * 8 6 5 10 10 C 1.54339 * 107.26246 * 178.84490 * 9 8 6 11 11 C 1.55151 * 103.02211 * 338.13807 * 10 9 8 12 12 H 1.08997 * 111.03716 * 277.22300 * 11 10 9 13 13 C 1.50700 * 111.00895 * 153.38208 * 11 10 9 14 14 H 1.08007 * 119.99516 * 6.35013 * 13 11 10 15 15 C 1.37870 * 120.00617 * 186.35275 * 13 11 10 16 16 N 1.31522 * 119.99542 * 359.97438 * 15 13 11 17 17 Si 1.86795 * 120.00386 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.46997 * 59.99495 * 17 15 13 19 19 H 1.48498 * 109.47460 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46966 * 299.99941 * 17 15 13 21 21 C 1.47417 * 125.64968 * 179.97438 * 8 6 5 22 22 C 1.36645 * 109.08392 * 0.02562 * 5 4 3 23 23 H 1.09002 * 109.46859 * 90.02463 * 1 2 3 24 24 H 1.08998 * 109.47493 * 210.02718 * 1 2 3 25 25 H 1.09003 * 109.46946 * 330.02548 * 1 2 3 26 26 H 1.08000 * 124.51936 * 359.72533 * 3 2 1 27 27 H 1.08993 * 109.88047 * 298.38507 * 9 8 6 28 28 H 1.08998 * 109.88362 * 59.55570 * 9 8 6 29 29 H 1.09001 * 110.85038 * 219.66833 * 10 9 8 30 30 H 1.09001 * 110.66822 * 96.52013 * 10 9 8 31 31 H 0.97002 * 119.99909 * 180.02562 * 16 15 13 32 32 H 1.09001 * 110.36972 * 322.93487 * 21 8 6 33 33 H 1.09007 * 110.36832 * 85.26043 * 21 8 6 34 34 H 1.07999 * 123.34685 * 179.97438 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1293 0.0000 4 16 3.8970 0.7892 0.0075 5 6 3.5936 -0.9427 0.0114 6 6 4.6231 -1.9862 0.0190 7 8 4.3001 -3.1596 0.0217 8 7 5.9273 -1.6463 0.0230 9 6 6.4550 -0.2740 0.0142 10 6 7.9946 -0.3752 0.0529 11 6 8.2373 -1.7890 0.6441 12 1 8.1744 -1.7743 1.7321 13 6 9.5627 -2.3443 0.1900 14 1 10.2418 -1.7249 -0.3772 15 6 9.9084 -3.6427 0.4986 16 7 9.0816 -4.3968 1.1897 17 14 11.5515 -4.3307 -0.0636 18 1 12.6521 -3.5191 0.5154 19 1 11.6816 -5.7377 0.3931 20 1 11.6275 -4.2818 -1.5459 21 6 7.0608 -2.5887 0.0312 22 6 2.2446 -1.1600 0.0063 23 1 -0.3633 -0.0004 -1.0277 24 1 -0.3634 -0.8897 0.5142 25 1 -0.3633 0.8902 0.5135 26 1 1.8026 2.1232 -0.0043 27 1 6.1381 0.2392 -0.8935 28 1 6.0987 0.2658 0.8915 29 1 8.4177 0.3919 0.7016 30 1 8.4104 -0.3008 -0.9519 31 1 9.3250 -5.3102 1.4072 32 1 6.8287 -3.4559 0.6495 33 1 7.3027 -2.9001 -0.9850 34 1 1.8019 -2.1451 0.0069 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259886903.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:14 Heat of formation + Delta-G solvation = -29.005508 kcal Electronic energy + Delta-G solvation = -17545.767756 eV Core-core repulsion = 14762.037559 eV Total energy + Delta-G solvation = -2783.730198 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.03381 -39.27873 -38.17740 -35.02329 -32.76981 -31.65494 -29.95994 -28.64140 -27.30289 -25.36359 -23.62379 -21.67260 -20.79141 -19.91423 -18.89218 -18.51642 -17.11090 -17.07079 -16.67806 -16.34279 -15.52933 -15.00380 -14.69939 -14.41654 -14.35675 -14.02836 -13.72159 -13.63091 -13.29219 -13.09672 -12.88158 -12.78654 -12.77255 -12.55862 -12.45180 -11.72696 -11.59333 -11.23243 -11.12041 -11.02321 -10.59177 -10.00485 -9.53436 -9.29293 -8.17398 -6.30529 -0.47856 0.51626 1.02455 1.35832 1.44117 1.45620 1.53529 1.99894 2.12734 2.42963 3.15270 3.53382 3.86367 4.08357 4.16960 4.20651 4.29561 4.42459 4.53803 4.62076 4.71100 4.87641 4.92256 4.94628 5.07217 5.09772 5.14578 5.26690 5.41485 5.49057 5.51829 5.65554 5.83999 6.23574 6.53499 6.80812 7.02433 7.40031 8.91232 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.045735 B = 0.004608 C = 0.004258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.070291 B = 6074.366193 C = 6574.812554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.131 4.131 3 C -0.240 4.240 4 S 0.261 5.739 5 C -0.297 4.297 6 C 0.582 3.418 7 O -0.594 6.594 8 N -0.615 5.615 9 C 0.089 3.911 10 C -0.112 4.112 11 C 0.038 3.962 12 H 0.012 0.988 13 C -0.531 4.531 14 H 0.072 0.928 15 C 0.010 3.990 16 N -0.923 5.923 17 Si 0.962 3.038 18 H -0.264 1.264 19 H -0.291 1.291 20 H -0.269 1.269 21 C 0.135 3.865 22 C -0.062 4.062 23 H 0.078 0.922 24 H 0.066 0.934 25 H 0.085 0.915 26 H 0.201 0.799 27 H 0.092 0.908 28 H 0.085 0.915 29 H 0.096 0.904 30 H 0.077 0.923 31 H 0.261 0.739 32 H 0.039 0.961 33 H 0.036 0.964 34 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.904 15.787 -2.957 20.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.143 4.143 3 C -0.377 4.377 4 S 0.530 5.470 5 C -0.417 4.417 6 C 0.373 3.627 7 O -0.478 6.478 8 N -0.347 5.347 9 C -0.034 4.034 10 C -0.150 4.150 11 C 0.018 3.982 12 H 0.030 0.970 13 C -0.569 4.569 14 H 0.090 0.910 15 C -0.189 4.189 16 N -0.561 5.561 17 Si 0.787 3.213 18 H -0.188 1.188 19 H -0.217 1.217 20 H -0.194 1.194 21 C 0.013 3.987 22 C -0.097 4.097 23 H 0.097 0.903 24 H 0.085 0.915 25 H 0.104 0.896 26 H 0.218 0.782 27 H 0.110 0.890 28 H 0.103 0.897 29 H 0.114 0.886 30 H 0.096 0.904 31 H 0.070 0.930 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -11.824 15.942 -2.876 20.056 hybrid contribution -0.478 -2.198 -0.053 2.250 sum -12.303 13.744 -2.929 18.677 Atomic orbital electron populations 1.20561 0.87437 1.03721 1.03206 1.18939 0.99324 0.90630 1.05406 1.25916 0.99904 1.04364 1.07519 1.83084 1.02864 0.94596 1.66414 1.24456 0.97391 0.98890 1.20936 1.17273 0.81349 0.87622 0.76460 1.90750 1.81916 1.20814 1.54322 1.48828 1.04892 1.10255 1.70690 1.22378 0.96355 0.81924 1.02733 1.22648 0.91797 0.98021 1.02505 1.19781 0.92176 0.91660 0.94568 0.97017 1.21366 1.02265 0.97849 1.35393 0.90950 1.25917 1.00594 0.97673 0.94753 1.70111 1.37872 1.08612 1.39530 0.85549 0.79854 0.77033 0.78891 1.18848 1.21697 1.19377 1.22260 0.84992 0.92707 0.98711 1.20811 0.90902 1.00762 0.97185 0.90318 0.91471 0.89597 0.78165 0.89048 0.89662 0.88560 0.90398 0.92973 0.94195 0.94542 0.84312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.30 10.13 71.23 0.72 -0.58 16 2 C -0.13 -2.78 5.78 -21.05 -0.12 -2.90 16 3 C -0.24 -4.29 10.67 66.82 0.71 -3.57 16 4 S 0.26 5.77 18.43 -56.49 -1.04 4.72 16 5 C -0.30 -9.83 6.38 24.08 0.15 -9.68 16 6 C 0.58 25.58 7.82 86.42 0.68 26.25 16 7 O -0.59 -31.31 17.10 -4.35 -0.07 -31.39 16 8 N -0.62 -26.49 3.33 -816.61 -2.72 -29.21 16 9 C 0.09 2.88 5.17 86.73 0.45 3.33 16 10 C -0.11 -3.98 6.39 31.79 0.20 -3.78 16 11 C 0.04 1.84 2.97 -10.15 -0.03 1.81 16 12 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 13 C -0.53 -28.04 8.55 25.60 0.22 -27.83 16 14 H 0.07 3.59 7.79 -2.91 -0.02 3.57 16 15 C 0.01 0.56 5.34 84.65 0.45 1.01 16 16 N -0.92 -54.88 12.06 21.45 0.26 -54.62 16 17 Si 0.96 43.05 29.54 68.60 2.03 45.08 16 18 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 19 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 20 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 21 C 0.14 6.98 5.65 86.85 0.49 7.47 16 22 C -0.06 -1.80 9.79 21.71 0.21 -1.59 16 23 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 24 H 0.07 0.97 8.13 -2.39 -0.02 0.95 16 25 H 0.09 0.88 8.12 -2.39 -0.02 0.86 16 26 H 0.20 2.07 8.06 -2.91 -0.02 2.04 16 27 H 0.09 2.44 7.01 -2.39 -0.02 2.42 16 28 H 0.09 2.39 6.80 -2.39 -0.02 2.38 16 29 H 0.10 2.89 8.14 -2.39 -0.02 2.87 16 30 H 0.08 2.66 8.03 -2.39 -0.02 2.64 16 31 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 32 H 0.04 2.40 7.33 -2.39 -0.02 2.38 16 33 H 0.04 1.97 8.03 -2.38 -0.02 1.95 16 34 H 0.14 4.22 8.06 -2.91 -0.02 4.19 16 Total: -1.00 -70.97 296.50 3.69 -67.28 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: 1.09 Total: 8.19 kcal Atomic # 6 Polarization: -14.20 SS G_CDS: 4.14 Total: -10.06 kcal Atomic # 7 Polarization: -81.37 SS G_CDS: -2.46 Total: -83.83 kcal Atomic # 8 Polarization: -31.31 SS G_CDS: -0.07 Total: -31.39 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Atomic # 16 Polarization: 5.77 SS G_CDS: -1.04 Total: 4.72 kcal Total: -70.97 3.69 -67.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259886903.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.276 kcal (2) G-P(sol) polarization free energy of solvation -70.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds