Wall clock time and date at job start Mon Mar 30 2020 06:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33812 * 122.45204 * 2 1 4 4 S 1.70624 * 110.95816 * 179.70613 * 3 2 1 5 5 C 1.75829 * 91.55923 * 0.35330 * 4 3 2 6 6 C 1.46584 * 125.45780 * 179.91409 * 5 4 3 7 7 O 1.21705 * 120.00366 * 179.70154 * 6 5 4 8 8 N 1.34776 * 119.99893 * 359.69005 * 6 5 4 9 9 C 1.47022 * 125.64948 * 359.96698 * 8 6 5 10 10 C 1.54366 * 107.28998 * 181.12158 * 9 8 6 11 11 C 1.55157 * 102.92262 * 22.13725 * 10 9 8 12 12 H 1.08997 * 111.00435 * 82.63392 * 11 10 9 13 13 C 1.50701 * 111.00545 * 206.45685 * 11 10 9 14 14 H 1.08002 * 119.99761 * 356.81235 * 13 11 10 15 15 C 1.37871 * 119.99694 * 177.09798 * 13 11 10 16 16 N 1.31514 * 120.00482 * 359.71466 * 15 13 11 17 17 Si 1.86801 * 119.99746 * 179.72062 * 15 13 11 18 18 H 1.48504 * 109.47266 * 60.00049 * 17 15 13 19 19 H 1.48504 * 109.46970 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47383 * 299.99456 * 17 15 13 21 21 C 1.47427 * 125.64950 * 179.97438 * 8 6 5 22 22 C 1.36649 * 109.08697 * 359.65329 * 5 4 3 23 23 H 1.09006 * 109.47055 * 270.02193 * 1 2 3 24 24 H 1.08996 * 109.47023 * 30.02147 * 1 2 3 25 25 H 1.09001 * 109.47419 * 150.02347 * 1 2 3 26 26 H 1.08006 * 124.52067 * 0.02562 * 3 2 1 27 27 H 1.08999 * 109.88168 * 300.51203 * 9 8 6 28 28 H 1.09008 * 109.88099 * 61.51249 * 9 8 6 29 29 H 1.09004 * 110.70708 * 263.79261 * 10 9 8 30 30 H 1.09001 * 110.75789 * 140.50398 * 10 9 8 31 31 H 0.96995 * 120.00207 * 179.97438 * 16 15 13 32 32 H 1.08997 * 110.36119 * 37.00784 * 21 8 6 33 33 H 1.09001 * 110.46347 * 274.73195 * 21 8 6 34 34 H 1.08000 * 123.35299 * 180.28960 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1292 0.0000 4 16 3.8970 0.7892 0.0082 5 6 3.5937 -0.9427 0.0008 6 6 4.6231 -1.9863 0.0013 7 8 4.3002 -3.1597 0.0013 8 7 5.9273 -1.6463 0.0015 9 6 6.4551 -0.2742 0.0006 10 6 7.9952 -0.3750 -0.0276 11 6 8.2395 -1.7919 -0.6108 12 1 8.1804 -1.7820 -1.6991 13 6 9.5633 -2.3451 -0.1495 14 1 10.2183 -1.7403 0.4601 15 6 9.9406 -3.6210 -0.5106 16 7 9.1430 -4.3575 -1.2528 17 14 11.5849 -4.3038 0.0547 18 1 11.6291 -4.3232 1.5390 19 1 11.7514 -5.6857 -0.4630 20 1 12.6813 -3.4458 -0.4621 21 6 7.0609 -2.5889 0.0025 22 6 2.2446 -1.1601 0.0004 23 1 -0.3633 0.0004 1.0277 24 1 -0.3633 0.8898 -0.5142 25 1 -0.3634 -0.8902 -0.5135 26 1 1.8025 2.1232 0.0004 27 1 6.1028 0.2579 -0.8831 28 1 6.1315 0.2481 0.9010 29 1 8.4051 -0.2965 0.9794 30 1 8.4205 0.3886 -0.6789 31 1 9.4087 -5.2550 -1.5071 32 1 6.8311 -3.4592 -0.6120 33 1 7.2997 -2.8966 1.0206 34 1 1.8019 -2.1452 0.0009 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259886907.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:16 Heat of formation + Delta-G solvation = -10.935460 kcal Electronic energy + Delta-G solvation = -17533.944042 eV Core-core repulsion = 14750.997420 eV Total energy + Delta-G solvation = -2782.946622 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.44805 -38.10978 -36.54642 -33.06735 -31.23768 -30.33433 -28.39352 -27.63793 -25.55004 -23.79551 -22.18454 -19.95883 -19.36999 -18.81172 -17.48359 -16.61230 -15.79185 -15.45014 -15.13655 -14.48929 -14.15857 -13.91480 -13.48681 -13.16613 -12.77623 -12.53805 -12.20569 -12.11125 -12.01852 -11.88667 -11.78197 -11.49731 -10.97465 -10.84252 -10.60180 -10.42634 -9.94183 -9.55788 -9.33393 -9.08458 -8.78698 -8.55160 -8.34826 -7.89491 -6.11896 -4.18029 0.65898 1.60619 2.03177 2.45224 3.28202 3.34527 3.35461 3.57064 3.60947 4.36880 4.83182 4.94308 5.14918 5.22489 5.29417 5.37036 5.49304 5.53248 5.54722 5.76847 5.81176 5.92287 6.18491 6.36111 6.39568 6.44336 6.67706 6.79943 6.92396 6.97350 7.41073 7.63823 7.86834 8.14787 8.24394 8.64459 8.85130 9.48296 10.97552 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.045883 B = 0.004587 C = 0.004245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.101204 B = 6102.319728 C = 6594.692712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.117 4.117 3 C -0.265 4.265 4 S 0.216 5.784 5 C -0.244 4.244 6 C 0.589 3.411 7 O -0.539 6.539 8 N -0.608 5.608 9 C 0.088 3.912 10 C -0.123 4.123 11 C 0.047 3.953 12 H 0.042 0.958 13 C -0.521 4.521 14 H 0.062 0.938 15 C 0.065 3.935 16 N -0.885 5.885 17 Si 0.896 3.104 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.276 1.276 21 C 0.119 3.881 22 C -0.068 4.068 23 H 0.067 0.933 24 H 0.063 0.937 25 H 0.067 0.933 26 H 0.162 0.838 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.265 0.735 32 H 0.084 0.916 33 H 0.057 0.943 34 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.284 12.107 2.299 17.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.130 4.130 3 C -0.403 4.403 4 S 0.486 5.514 5 C -0.364 4.364 6 C 0.377 3.623 7 O -0.419 6.419 8 N -0.340 5.340 9 C -0.037 4.037 10 C -0.161 4.161 11 C 0.028 3.972 12 H 0.060 0.940 13 C -0.559 4.559 14 H 0.080 0.920 15 C -0.138 4.138 16 N -0.521 5.521 17 Si 0.724 3.276 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.202 1.202 21 C -0.002 4.002 22 C -0.101 4.101 23 H 0.086 0.914 24 H 0.082 0.918 25 H 0.086 0.914 26 H 0.179 0.821 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.103 0.897 33 H 0.075 0.925 34 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -11.216 12.204 2.219 16.723 hybrid contribution -0.593 -1.145 0.273 1.318 sum -11.809 11.059 2.491 16.369 Atomic orbital electron populations 1.20492 0.89890 1.02599 1.02143 1.18725 0.97607 0.91648 1.05066 1.25430 1.00929 1.02919 1.10978 1.83456 1.01758 0.98797 1.67433 1.24822 0.98111 0.97120 1.16387 1.16611 0.80784 0.87118 0.77828 1.90806 1.81045 1.18167 1.51920 1.48799 1.05366 1.09306 1.70555 1.22176 0.97553 0.83720 1.00210 1.22720 0.90374 1.01040 1.01973 1.19865 0.93065 0.88062 0.96254 0.94011 1.20918 1.01933 0.99546 1.33491 0.91989 1.25047 0.97210 0.97022 0.94557 1.69932 1.36502 1.10038 1.35667 0.86592 0.83860 0.78077 0.79109 1.20133 1.21225 1.20151 1.22815 0.83178 0.93177 1.00982 1.20601 0.91098 0.99794 0.98590 0.91396 0.91768 0.91442 0.82087 0.91893 0.92080 0.91168 0.91334 0.92521 0.89747 0.92507 0.83186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.82 10.13 36.00 0.36 -0.46 16 2 C -0.12 -1.42 5.78 -106.45 -0.62 -2.04 16 3 C -0.27 -2.99 10.67 29.18 0.31 -2.68 16 4 S 0.22 2.76 18.43 -107.50 -1.98 0.78 16 5 C -0.24 -4.08 6.38 -36.79 -0.23 -4.32 16 6 C 0.59 12.37 7.82 -12.90 -0.10 12.27 16 7 O -0.54 -13.18 17.10 5.18 0.09 -13.09 16 8 N -0.61 -12.70 3.33 -172.05 -0.57 -13.27 16 9 C 0.09 1.50 5.18 -3.04 -0.02 1.48 16 10 C -0.12 -2.29 6.40 -24.87 -0.16 -2.45 16 11 C 0.05 1.12 2.90 -89.61 -0.26 0.86 16 12 H 0.04 1.08 8.14 -51.93 -0.42 0.66 16 13 C -0.52 -13.57 8.52 -34.44 -0.29 -13.87 16 14 H 0.06 1.56 7.78 -52.49 -0.41 1.15 16 15 C 0.07 1.75 5.36 -17.82 -0.10 1.65 16 16 N -0.88 -25.08 12.30 55.43 0.68 -24.39 16 17 Si 0.90 20.69 29.54 -169.99 -5.02 15.67 16 18 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 19 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 21 C 0.12 2.88 5.78 -2.52 -0.01 2.86 16 22 C -0.07 -1.01 9.80 -40.43 -0.40 -1.40 16 23 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.06 0.48 8.12 -51.93 -0.42 0.06 16 25 H 0.07 0.56 8.13 -51.93 -0.42 0.14 16 26 H 0.16 1.37 8.06 -52.48 -0.42 0.95 16 27 H 0.06 0.97 6.84 -51.93 -0.36 0.62 16 28 H 0.06 0.91 6.96 -51.92 -0.36 0.55 16 29 H 0.07 1.28 8.03 -51.93 -0.42 0.86 16 30 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 31 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 32 H 0.08 2.32 7.48 -51.93 -0.39 1.94 16 33 H 0.06 1.43 8.03 -51.93 -0.42 1.01 16 34 H 0.15 2.19 8.06 -52.49 -0.42 1.76 16 LS Contribution 296.93 15.07 4.47 4.47 Total: -1.00 -30.23 296.93 -8.28 -38.50 By element: Atomic # 1 Polarization: 3.84 SS G_CDS: -4.44 Total: -0.60 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: -1.51 Total: -8.07 kcal Atomic # 7 Polarization: -37.78 SS G_CDS: 0.11 Total: -37.67 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: 0.09 Total: -13.09 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Atomic # 16 Polarization: 2.76 SS G_CDS: -1.98 Total: 0.78 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -30.23 -8.28 -38.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259886907.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.569 kcal (2) G-P(sol) polarization free energy of solvation -30.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds