Wall clock time and date at job start Mon Mar 30 2020 06:31:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.34128 * 126.24127 * 2 1 4 4 C 1.30371 * 108.90715 * 179.97438 * 3 2 1 5 5 O 1.33987 * 109.03653 * 0.26788 * 4 3 2 6 6 C 1.35135 * 107.70871 * 359.56783 * 5 4 3 7 7 C 1.47805 * 126.58458 * 180.12214 * 6 5 4 8 8 N 1.31200 * 121.32706 * 180.37734 * 7 6 5 9 9 S 1.69932 * 105.63971 * 179.97438 * 8 7 6 10 10 C 1.72250 * 94.69201 * 359.97438 * 9 8 7 11 11 C 1.50697 * 127.34209 * 180.02562 * 10 9 8 12 12 C 1.53005 * 109.47209 * 269.97601 * 11 10 9 13 13 C 1.50696 * 109.47211 * 180.02562 * 12 11 10 14 14 H 1.07999 * 120.00075 * 359.97438 * 13 12 11 15 15 C 1.37875 * 119.99844 * 180.02562 * 13 12 11 16 16 N 1.31516 * 120.00200 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99937 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.47317 * 59.99918 * 17 15 13 19 19 H 1.48504 * 109.47486 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47344 * 299.99711 * 17 15 13 21 21 N 1.30679 * 105.31330 * 359.76890 * 10 9 8 22 22 H 1.09001 * 109.47006 * 90.02445 * 1 2 3 23 23 H 1.08997 * 109.46916 * 210.02575 * 1 2 3 24 24 H 1.08999 * 109.47143 * 330.02663 * 1 2 3 25 25 H 1.08002 * 125.47893 * 179.97438 * 4 3 2 26 26 H 1.08991 * 109.47388 * 29.97930 * 11 10 9 27 27 H 1.09008 * 109.47064 * 149.98005 * 11 10 9 28 28 H 1.09000 * 109.47042 * 300.00200 * 12 11 10 29 29 H 1.09001 * 109.46908 * 59.99909 * 12 11 10 30 30 H 0.97002 * 119.99935 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3000 1.0818 0.0000 4 6 3.5445 0.6934 0.0006 5 8 3.5843 -0.6459 -0.0050 6 6 2.3098 -1.0951 0.0006 7 6 1.8734 -2.5072 0.0000 8 7 0.6012 -2.8281 -0.0015 9 16 0.5572 -4.5268 -0.0023 10 6 2.2697 -4.7121 -0.0013 11 6 3.0495 -6.0016 -0.0019 12 6 3.3130 -6.4391 1.4404 13 6 4.0934 -7.7282 1.4398 14 1 4.3731 -8.1896 0.5043 15 6 4.4493 -8.3191 2.6336 16 7 4.1083 -7.7574 3.7728 17 14 5.4161 -9.9175 2.6328 18 1 6.7102 -9.7130 1.9339 19 1 5.6708 -10.3426 4.0327 20 1 4.6353 -10.9680 1.9314 21 7 2.7484 -3.4962 -0.0055 22 1 -0.3633 -0.0004 -1.0277 23 1 -0.3633 -0.8897 0.5142 24 1 -0.3633 0.8902 0.5134 25 1 4.4049 1.3461 0.0003 26 1 2.4763 -6.7727 -0.5165 27 1 3.9994 -5.8516 -0.5153 28 1 3.8863 -5.6679 1.9550 29 1 2.3632 -6.5891 1.9538 30 1 4.3584 -8.1734 4.6126 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259896351.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:38 Heat of formation + Delta-G solvation = 67.088860 kcal Electronic energy + Delta-G solvation = -16678.038591 eV Core-core repulsion = 13794.935014 eV Total energy + Delta-G solvation = -2883.103577 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.063 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.46758 -40.01659 -35.42473 -34.66908 -32.88258 -31.50427 -30.50548 -28.22538 -26.42741 -24.50042 -22.85646 -21.68406 -20.77730 -19.76822 -18.64699 -17.28681 -16.89889 -16.54912 -15.65171 -15.01555 -14.67602 -14.51442 -13.93427 -13.44414 -13.32402 -12.99128 -12.50729 -12.32651 -12.08119 -11.62221 -11.38984 -11.16213 -10.99236 -10.84455 -10.78358 -10.33534 -10.14758 -9.85744 -9.62241 -9.49674 -9.31030 -8.48914 -8.38534 -6.12980 -4.18120 0.25993 1.22424 1.28148 1.47560 2.36610 2.73709 2.96646 3.27381 3.32526 3.34126 3.67894 3.99668 4.35592 4.66485 4.83845 5.18967 5.23480 5.41515 5.55535 5.60453 5.66778 5.78749 5.92325 6.02949 6.17823 6.23507 6.56862 7.41555 7.43689 7.50999 7.65938 7.82028 8.17733 8.86769 9.47105 10.98072 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.030984 B = 0.004225 C = 0.003910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.460932 B = 6626.033478 C = 7158.517588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.048 3.952 3 N -0.490 5.490 4 C 0.192 3.808 5 O -0.178 6.178 6 C 0.020 3.980 7 C 0.344 3.656 8 N -0.476 5.476 9 S 0.241 5.759 10 C 0.137 3.863 11 C -0.045 4.045 12 C 0.032 3.968 13 C -0.528 4.528 14 H 0.061 0.939 15 C 0.061 3.939 16 N -0.891 5.891 17 Si 0.898 3.102 18 H -0.275 1.275 19 H -0.287 1.287 20 H -0.275 1.275 21 N -0.511 5.511 22 H 0.078 0.922 23 H 0.093 0.907 24 H 0.075 0.925 25 H 0.257 0.743 26 H 0.089 0.911 27 H 0.094 0.906 28 H 0.026 0.974 29 H 0.022 0.978 30 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.308 12.198 -8.295 15.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.077 4.077 3 N -0.219 5.219 4 C -0.035 4.035 5 O -0.062 6.062 6 C -0.038 4.038 7 C 0.057 3.943 8 N -0.310 5.310 9 S 0.385 5.615 10 C -0.149 4.149 11 C -0.086 4.086 12 C -0.007 4.007 13 C -0.566 4.566 14 H 0.079 0.921 15 C -0.141 4.141 16 N -0.529 5.529 17 Si 0.725 3.275 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.201 1.201 21 N -0.232 5.232 22 H 0.096 0.904 23 H 0.112 0.888 24 H 0.094 0.906 25 H 0.272 0.728 26 H 0.107 0.893 27 H 0.112 0.888 28 H 0.044 0.956 29 H 0.041 0.959 30 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.702 12.858 -8.122 16.620 hybrid contribution 1.946 -1.138 0.202 2.264 sum -4.756 11.720 -7.920 14.923 Atomic orbital electron populations 1.20303 0.85479 1.04070 1.03354 1.21870 0.98267 0.86269 1.01300 1.70360 1.01343 1.31215 1.19013 1.28245 0.97639 0.79133 0.98521 1.84569 1.28658 1.24111 1.68895 1.19374 0.81594 0.90416 1.12378 1.19950 0.84766 0.90721 0.98860 1.77486 1.19020 1.05861 1.28643 1.84943 1.10310 1.01743 1.64498 1.29744 0.96672 0.97340 0.91114 1.20865 0.98226 0.85421 1.04084 1.19162 0.97810 0.96947 0.86788 1.21041 1.35780 1.07021 0.92751 0.92106 1.25007 0.95887 0.97770 0.95483 1.69953 1.46013 1.39541 0.97438 0.86569 0.80485 0.83351 0.77105 1.20076 1.21216 1.20059 1.67421 1.36012 0.98195 1.21576 0.90370 0.88820 0.90586 0.72781 0.89310 0.88790 0.95568 0.95918 0.92651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.88 9.86 36.01 0.35 -0.53 16 2 C 0.05 0.70 7.15 -82.47 -0.59 0.11 16 3 N -0.49 -6.54 11.27 -10.90 -0.12 -6.66 16 4 C 0.19 2.12 13.22 52.14 0.69 2.81 16 5 O -0.18 -2.67 10.79 4.21 0.05 -2.63 16 6 C 0.02 0.33 7.27 -36.55 -0.27 0.06 16 7 C 0.34 6.10 7.51 -158.84 -1.19 4.91 16 8 N -0.48 -7.83 9.76 29.56 0.29 -7.54 16 9 S 0.24 3.76 23.80 -107.50 -2.56 1.20 16 10 C 0.14 2.49 7.04 -12.77 -0.09 2.40 16 11 C -0.04 -0.84 5.78 -27.88 -0.16 -1.00 16 12 C 0.03 0.78 4.95 -27.88 -0.14 0.64 16 13 C -0.53 -13.93 9.11 -34.44 -0.31 -14.24 16 14 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 15 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 16 N -0.89 -25.84 13.29 55.43 0.74 -25.10 16 17 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16 18 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 19 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 21 N -0.51 -9.84 10.58 -11.25 -0.12 -9.96 16 22 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 23 H 0.09 1.19 6.32 -51.93 -0.33 0.86 16 24 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.26 1.29 8.06 -52.49 -0.42 0.87 16 26 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 27 H 0.09 1.73 8.14 -51.92 -0.42 1.31 16 28 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 286.97 15.07 4.32 4.32 Total: -1.00 -31.44 286.97 -7.06 -38.50 By element: Atomic # 1 Polarization: -1.68 SS G_CDS: -2.83 Total: -4.51 kcal Atomic # 6 Polarization: -1.48 SS G_CDS: -1.80 Total: -3.28 kcal Atomic # 7 Polarization: -50.04 SS G_CDS: 0.78 Total: -49.26 kcal Atomic # 8 Polarization: -2.67 SS G_CDS: 0.05 Total: -2.63 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Atomic # 16 Polarization: 3.76 SS G_CDS: -2.56 Total: 1.20 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -31.44 -7.06 -38.50 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259896351.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.588 kcal (2) G-P(sol) polarization free energy of solvation -31.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds