Wall clock time and date at job start Mon Mar 30 2020 06:31:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.34128 * 126.24127 * 2 1 4 4 C 1.30371 * 108.90715 * 179.97438 * 3 2 1 5 5 O 1.33987 * 109.03653 * 0.26788 * 4 3 2 6 6 C 1.35135 * 107.70871 * 359.56783 * 5 4 3 7 7 C 1.47805 * 126.58458 * 180.12214 * 6 5 4 8 8 N 1.31200 * 121.32706 * 180.37734 * 7 6 5 9 9 S 1.69932 * 105.63971 * 179.97438 * 8 7 6 10 10 C 1.72250 * 94.69201 * 359.97438 * 9 8 7 11 11 C 1.50697 * 127.34209 * 180.02562 * 10 9 8 12 12 C 1.53005 * 109.47209 * 269.97601 * 11 10 9 13 13 C 1.50696 * 109.47211 * 180.02562 * 12 11 10 14 14 H 1.07999 * 120.00075 * 359.97438 * 13 12 11 15 15 C 1.37875 * 119.99844 * 180.02562 * 13 12 11 16 16 N 1.31516 * 120.00200 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99937 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.47317 * 59.99918 * 17 15 13 19 19 H 1.48504 * 109.47486 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47344 * 299.99711 * 17 15 13 21 21 N 1.30679 * 105.31330 * 359.76890 * 10 9 8 22 22 H 1.09001 * 109.47006 * 90.02445 * 1 2 3 23 23 H 1.08997 * 109.46916 * 210.02575 * 1 2 3 24 24 H 1.08999 * 109.47143 * 330.02663 * 1 2 3 25 25 H 1.08002 * 125.47893 * 179.97438 * 4 3 2 26 26 H 1.08991 * 109.47388 * 29.97930 * 11 10 9 27 27 H 1.09008 * 109.47064 * 149.98005 * 11 10 9 28 28 H 1.09000 * 109.47042 * 300.00200 * 12 11 10 29 29 H 1.09001 * 109.46908 * 59.99909 * 12 11 10 30 30 H 0.97002 * 119.99935 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3000 1.0818 0.0000 4 6 3.5445 0.6934 0.0006 5 8 3.5843 -0.6459 -0.0050 6 6 2.3098 -1.0951 0.0006 7 6 1.8734 -2.5072 0.0000 8 7 0.6012 -2.8281 -0.0015 9 16 0.5572 -4.5268 -0.0023 10 6 2.2697 -4.7121 -0.0013 11 6 3.0495 -6.0016 -0.0019 12 6 3.3130 -6.4391 1.4404 13 6 4.0934 -7.7282 1.4398 14 1 4.3731 -8.1896 0.5043 15 6 4.4493 -8.3191 2.6336 16 7 4.1083 -7.7574 3.7728 17 14 5.4161 -9.9175 2.6328 18 1 6.7102 -9.7130 1.9339 19 1 5.6708 -10.3426 4.0327 20 1 4.6353 -10.9680 1.9314 21 7 2.7484 -3.4962 -0.0055 22 1 -0.3633 -0.0004 -1.0277 23 1 -0.3633 -0.8897 0.5142 24 1 -0.3633 0.8902 0.5134 25 1 4.4049 1.3461 0.0003 26 1 2.4763 -6.7727 -0.5165 27 1 3.9994 -5.8516 -0.5153 28 1 3.8863 -5.6679 1.9550 29 1 2.3632 -6.5891 1.9538 30 1 4.3584 -8.1734 4.6126 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259896351.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:38 Heat of formation + Delta-G solvation = 44.964422 kcal Electronic energy + Delta-G solvation = -16678.997978 eV Core-core repulsion = 13794.935014 eV Total energy + Delta-G solvation = -2884.062964 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.063 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -44.50194 -41.35186 -36.56940 -36.25285 -34.55921 -32.85249 -31.93448 -29.36750 -28.10554 -25.83228 -24.24668 -23.05903 -22.05039 -21.12645 -19.95431 -18.57372 -18.33705 -17.97144 -16.76941 -16.61860 -16.19901 -15.74900 -15.39970 -15.00627 -14.33253 -14.25604 -14.04904 -13.57071 -13.43300 -13.30222 -12.88328 -12.70437 -12.50918 -12.19060 -12.02893 -11.93314 -11.74847 -11.38987 -11.29065 -10.95693 -10.86941 -10.55831 -9.54424 -8.20490 -6.32691 -1.02056 -0.02911 0.06776 0.20025 1.32566 1.45717 1.48089 1.55730 1.68093 1.71989 2.40711 2.49945 3.13053 3.14719 3.55595 3.63849 4.01463 4.22341 4.39889 4.44857 4.54472 4.61875 4.68537 4.84306 4.91773 5.02162 5.30078 5.42713 5.52110 5.77112 6.13813 6.25483 6.49925 6.82570 7.37619 8.91412 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.030984 B = 0.004225 C = 0.003910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.460932 B = 6626.033478 C = 7158.517588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.059 3.941 3 N -0.513 5.513 4 C 0.221 3.779 5 O -0.199 6.199 6 C -0.026 4.026 7 C 0.335 3.665 8 N -0.478 5.478 9 S 0.294 5.706 10 C 0.113 3.887 11 C -0.031 4.031 12 C 0.038 3.962 13 C -0.541 4.541 14 H 0.076 0.924 15 C 0.002 3.998 16 N -0.934 5.934 17 Si 0.968 3.032 18 H -0.267 1.267 19 H -0.289 1.289 20 H -0.261 1.261 21 N -0.536 5.536 22 H 0.091 0.909 23 H 0.084 0.916 24 H 0.092 0.908 25 H 0.311 0.689 26 H 0.116 0.884 27 H 0.096 0.904 28 H -0.012 1.012 29 H 0.004 0.996 30 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.276 12.526 -9.433 16.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.066 4.066 3 N -0.242 5.242 4 C -0.005 4.005 5 O -0.085 6.085 6 C -0.083 4.083 7 C 0.049 3.951 8 N -0.312 5.312 9 S 0.438 5.562 10 C -0.173 4.173 11 C -0.072 4.072 12 C -0.001 4.001 13 C -0.579 4.579 14 H 0.094 0.906 15 C -0.196 4.196 16 N -0.574 5.574 17 Si 0.792 3.208 18 H -0.192 1.192 19 H -0.214 1.214 20 H -0.186 1.186 21 N -0.258 5.258 22 H 0.109 0.891 23 H 0.102 0.898 24 H 0.111 0.889 25 H 0.325 0.675 26 H 0.134 0.866 27 H 0.114 0.886 28 H 0.006 0.994 29 H 0.022 0.978 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.688 13.181 -9.283 17.454 hybrid contribution 1.906 -1.063 0.553 2.252 sum -4.782 12.118 -8.730 15.682 Atomic orbital electron populations 1.20377 0.84138 1.04353 1.04226 1.22258 0.99250 0.86050 0.99025 1.70433 1.02204 1.30795 1.20765 1.29597 0.98604 0.78223 0.94069 1.84564 1.28460 1.25837 1.69628 1.19433 0.82499 0.90216 1.16121 1.20158 0.84838 0.91310 0.98822 1.77434 1.18655 1.06497 1.28605 1.84666 1.07505 1.01038 1.62999 1.29518 0.98380 0.96882 0.92482 1.20576 0.99284 0.86674 1.00669 1.18943 0.95953 0.95395 0.89822 1.21555 1.35363 1.07627 0.93355 0.90618 1.25970 0.97009 1.01478 0.95129 1.70103 1.47723 1.41437 0.98137 0.85457 0.79208 0.79104 0.77035 1.19210 1.21429 1.18588 1.67412 1.37495 0.98869 1.22063 0.89065 0.89763 0.88945 0.67484 0.86603 0.88602 0.99407 0.97774 0.92755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.65 9.86 71.24 0.70 -0.95 16 2 C 0.06 1.65 7.15 41.64 0.30 1.95 16 3 N -0.51 -12.72 11.27 -303.12 -3.42 -16.13 16 4 C 0.22 4.38 13.22 130.46 1.72 6.10 16 5 O -0.20 -5.84 10.79 -7.86 -0.08 -5.93 16 6 C -0.03 -0.83 7.27 24.23 0.18 -0.65 16 7 C 0.33 11.96 7.51 137.97 1.04 13.00 16 8 N -0.48 -15.53 9.76 -60.39 -0.59 -16.12 16 9 S 0.29 8.97 23.80 -56.49 -1.34 7.63 16 10 C 0.11 4.11 7.04 88.28 0.62 4.73 16 11 C -0.03 -1.18 5.78 29.85 0.17 -1.00 16 12 C 0.04 1.90 4.95 29.85 0.15 2.04 16 13 C -0.54 -28.64 9.11 25.60 0.23 -28.41 16 14 H 0.08 3.69 7.74 -2.91 -0.02 3.67 16 15 C 0.00 0.13 5.46 84.65 0.46 0.59 16 16 N -0.93 -55.39 13.29 21.45 0.28 -55.10 16 17 Si 0.97 42.21 29.54 68.60 2.03 44.24 16 18 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 19 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 20 H -0.26 -10.74 7.11 99.48 0.71 -10.04 16 21 N -0.54 -21.00 10.58 -189.51 -2.01 -23.00 16 22 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 23 H 0.08 2.07 6.32 -2.39 -0.02 2.06 16 24 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 25 H 0.31 1.86 8.06 -2.91 -0.02 1.84 16 26 H 0.12 3.67 8.14 -2.39 -0.02 3.65 16 27 H 0.10 3.53 8.14 -2.38 -0.02 3.51 16 28 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 29 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 30 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 Total: -1.00 -69.34 286.97 1.62 -67.72 By element: Atomic # 1 Polarization: -1.87 SS G_CDS: 1.17 Total: -0.69 kcal Atomic # 6 Polarization: -8.17 SS G_CDS: 5.57 Total: -2.60 kcal Atomic # 7 Polarization: -104.64 SS G_CDS: -5.73 Total: -110.36 kcal Atomic # 8 Polarization: -5.84 SS G_CDS: -0.08 Total: -5.93 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Atomic # 16 Polarization: 8.97 SS G_CDS: -1.34 Total: 7.63 kcal Total: -69.34 1.62 -67.72 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259896351.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.684 kcal (2) G-P(sol) polarization free energy of solvation -69.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds