Wall clock time and date at job start Mon Mar 30 2020 06:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00279 * 2 1 4 4 H 1.48498 * 109.46953 * 269.99936 * 3 2 1 5 5 H 1.48507 * 109.46965 * 29.99506 * 3 2 1 6 6 H 1.48494 * 109.47539 * 149.99897 * 3 2 1 7 7 C 1.37876 * 119.99732 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99929 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00245 * 0.02562 * 7 2 1 10 10 H 1.09000 * 108.70561 * 61.53805 * 9 7 2 11 11 C 1.54257 * 108.87007 * 303.07434 * 9 7 2 12 12 S 1.83959 * 102.58176 * 263.70939 * 11 9 7 13 13 C 1.83955 * 94.80588 * 325.50391 * 12 11 9 14 14 H 1.08998 * 110.95300 * 276.14959 * 13 12 11 15 15 C 1.50698 * 110.78621 * 152.76351 * 13 12 11 16 16 C 1.38289 * 119.97869 * 307.07247 * 15 13 12 17 17 C 1.38237 * 120.11494 * 180.27323 * 16 15 13 18 18 C 1.38167 * 120.05858 * 359.74537 * 17 16 15 19 19 C 1.38709 * 119.93745 * 0.02562 * 18 17 16 20 20 O 1.35906 * 120.05198 * 179.97438 * 19 18 17 21 21 C 1.38125 * 119.96886 * 126.83696 * 15 13 12 22 22 C 1.52342 * 108.86692 * 179.97438 * 9 7 2 23 23 H 1.08993 * 108.75521 * 0.08268 * 22 9 7 24 24 N 1.46894 * 108.86586 * 241.63792 * 22 9 7 25 25 H 0.96999 * 120.00170 * 0.02562 * 1 2 3 26 26 H 1.09004 * 110.78642 * 21.98260 * 11 9 7 27 27 H 1.09002 * 110.78390 * 145.24247 * 11 9 7 28 28 H 1.08001 * 119.93832 * 0.02562 * 16 15 13 29 29 H 1.08006 * 119.97272 * 179.72959 * 17 16 15 30 30 H 1.07993 * 120.03379 * 179.97438 * 18 17 16 31 31 H 0.96696 * 114.00369 * 270.02003 * 20 19 18 32 32 H 1.08002 * 120.03152 * 0.02562 * 21 15 13 33 33 H 1.00907 * 110.99829 * 175.47407 * 24 22 9 34 34 H 1.00899 * 111.00643 * 299.42106 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 1 0.6504 -2.5561 -0.9073 11 6 0.3112 -2.5327 1.2233 12 16 1.2987 -3.4675 2.4622 13 6 2.0926 -4.5726 1.2244 14 1 1.4478 -5.4188 0.9871 15 6 3.4359 -5.0476 1.7152 16 6 4.3797 -4.1309 2.1409 17 6 5.6149 -4.5631 2.5864 18 6 5.9076 -5.9132 2.6124 19 6 4.9610 -6.8350 2.1904 20 8 5.2466 -8.1635 2.2144 21 6 3.7217 -6.3987 1.7441 22 6 2.2531 -3.6466 0.0005 23 1 3.2609 -3.2316 0.0020 24 7 2.0682 -4.4387 -1.2226 25 1 -0.4850 0.8400 -0.0004 26 1 0.1013 -1.5234 1.5777 27 1 -0.6141 -3.0578 0.9858 28 1 4.1528 -3.0752 2.1215 29 1 6.3519 -3.8449 2.9142 30 1 6.8728 -6.2504 2.9601 31 1 5.6450 -8.4950 1.3981 32 1 2.9831 -7.1145 1.4148 33 1 2.7651 -5.1651 -1.2918 34 1 1.1373 -4.8256 -1.2657 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259898718.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:32 Heat of formation + Delta-G solvation = -20.243184 kcal Electronic energy + Delta-G solvation = -17833.677316 eV Core-core repulsion = 15050.327081 eV Total energy + Delta-G solvation = -2783.350235 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.74454 -37.43888 -36.14153 -33.21595 -31.51198 -30.02241 -29.71085 -26.77049 -25.43329 -23.19476 -22.44212 -21.34687 -19.19235 -18.00588 -16.83197 -16.24961 -15.93163 -15.57058 -14.94836 -14.81797 -14.40625 -14.14471 -13.91443 -13.31145 -12.90892 -12.39328 -12.34230 -12.01106 -11.83570 -11.34971 -11.29342 -10.97224 -10.84193 -10.62366 -10.40310 -10.27568 -9.85020 -9.26763 -9.13256 -8.86727 -8.55020 -8.36490 -7.99295 -6.85155 -6.11409 -4.15550 1.28224 1.39261 2.68508 3.27178 3.33425 3.35731 3.37945 3.77223 4.22714 4.37120 4.82616 4.96413 5.08601 5.23483 5.25628 5.31812 5.51049 5.60076 5.64229 5.95852 6.01021 6.21453 6.38293 6.45241 6.52165 6.58316 6.72943 6.81092 6.90827 7.35653 7.44885 7.62447 7.82325 7.83655 7.93545 8.24958 8.83693 9.48245 10.95629 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.026684 B = 0.005950 C = 0.005555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.081070 B = 4705.027407 C = 5039.196670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.895 3.105 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.496 4.496 8 H 0.059 0.941 9 C 0.044 3.956 10 H 0.051 0.949 11 C -0.027 4.027 12 S -0.326 6.326 13 C -0.036 4.036 14 H 0.085 0.915 15 C -0.040 4.040 16 C -0.099 4.099 17 C -0.105 4.105 18 C -0.150 4.150 19 C 0.096 3.904 20 O -0.501 6.501 21 C -0.140 4.140 22 C 0.107 3.893 23 H 0.091 0.909 24 N -0.834 5.834 25 H 0.263 0.737 26 H 0.127 0.873 27 H 0.052 0.948 28 H 0.141 0.859 29 H 0.127 0.873 30 H 0.124 0.876 31 H 0.386 0.614 32 H 0.123 0.877 33 H 0.327 0.673 34 H 0.333 0.667 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.620 -11.277 1.691 13.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.723 3.277 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.534 4.534 8 H 0.077 0.923 9 C 0.024 3.976 10 H 0.069 0.931 11 C -0.175 4.175 12 S -0.098 6.098 13 C -0.167 4.167 14 H 0.103 0.897 15 C -0.041 4.041 16 C -0.119 4.119 17 C -0.123 4.123 18 C -0.169 4.169 19 C 0.052 3.948 20 O -0.311 6.311 21 C -0.160 4.160 22 C -0.006 4.006 23 H 0.109 0.891 24 N -0.361 5.361 25 H 0.073 0.927 26 H 0.145 0.855 27 H 0.071 0.929 28 H 0.158 0.842 29 H 0.145 0.855 30 H 0.142 0.858 31 H 0.241 0.759 32 H 0.141 0.859 33 H 0.139 0.861 34 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 7.398 -10.298 3.078 13.049 hybrid contribution 0.261 -0.099 -0.932 0.973 sum 7.659 -10.397 2.146 13.091 Atomic orbital electron populations 1.69878 1.05894 1.26868 1.50586 1.24949 0.94927 0.99273 0.95073 0.86534 0.79916 0.83178 0.78116 1.20667 1.21243 1.19777 1.21154 0.92756 0.89556 1.49948 0.92323 1.19157 0.92105 0.92234 0.94123 0.93122 1.24538 0.96591 1.01890 0.94475 1.87625 1.58589 1.44267 1.19278 1.23789 0.94471 0.99935 0.98463 0.89678 1.19365 0.94454 0.92470 0.97832 1.21330 0.92490 1.01157 0.96887 1.21047 0.96950 0.94991 0.99286 1.21356 0.99407 0.93236 1.02939 1.18338 0.93143 0.82868 1.00446 1.84827 1.83834 1.20630 1.41799 1.21224 0.97232 0.95292 1.02275 1.22575 1.03204 0.91746 0.83079 0.89142 1.59069 1.07455 1.29689 1.39903 0.92749 0.85517 0.92941 0.84164 0.85535 0.85833 0.75902 0.85881 0.86140 0.85426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.26 11.43 55.43 0.63 -23.62 16 2 C 0.06 1.55 5.03 -17.82 -0.09 1.46 16 3 Si 0.89 20.73 29.54 -169.99 -5.02 15.71 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.50 -12.80 8.48 -34.44 -0.29 -13.09 16 8 H 0.06 1.52 7.19 -52.48 -0.38 1.14 16 9 C 0.04 1.02 2.39 -91.45 -0.22 0.80 16 10 H 0.05 1.29 7.78 -51.93 -0.40 0.89 16 11 C -0.03 -0.61 6.41 37.82 0.24 -0.37 16 12 S -0.33 -6.71 22.10 -107.50 -2.38 -9.09 16 13 C -0.04 -0.63 3.15 -27.20 -0.09 -0.72 16 14 H 0.08 1.39 7.81 -51.93 -0.41 0.98 16 15 C -0.04 -0.63 4.94 -104.65 -0.52 -1.15 16 16 C -0.10 -1.60 8.37 -39.56 -0.33 -1.93 16 17 C -0.10 -1.42 10.04 -39.61 -0.40 -1.81 16 18 C -0.15 -1.91 9.99 -39.43 -0.39 -2.30 16 19 C 0.10 1.27 6.71 -39.22 -0.26 1.01 16 20 O -0.50 -5.71 13.50 -19.44 -0.26 -5.97 16 21 C -0.14 -1.99 9.62 -39.43 -0.38 -2.37 16 22 C 0.11 2.05 2.91 -67.37 -0.20 1.85 16 23 H 0.09 1.88 6.01 -51.93 -0.31 1.57 16 24 N -0.83 -13.90 8.93 -4.38 -0.04 -13.94 16 25 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 26 H 0.13 3.27 5.94 -51.93 -0.31 2.96 16 27 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 28 H 0.14 2.48 7.75 -52.49 -0.41 2.07 16 29 H 0.13 1.42 8.06 -52.48 -0.42 1.00 16 30 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 31 H 0.39 2.44 9.06 45.56 0.41 2.85 16 32 H 0.12 1.58 7.98 -52.49 -0.42 1.16 16 33 H 0.33 4.64 9.05 -39.29 -0.36 4.29 16 34 H 0.33 5.14 8.94 -39.29 -0.35 4.79 16 LS Contribution 294.93 15.07 4.44 4.44 Total: -1.00 -28.59 294.93 -8.87 -37.46 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: -3.33 Total: 13.63 kcal Atomic # 6 Polarization: -15.70 SS G_CDS: -2.92 Total: -18.62 kcal Atomic # 7 Polarization: -38.15 SS G_CDS: 0.59 Total: -37.56 kcal Atomic # 8 Polarization: -5.71 SS G_CDS: -0.26 Total: -5.97 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 16 Polarization: -6.71 SS G_CDS: -2.38 Total: -9.09 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -28.59 -8.87 -37.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259898718.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.214 kcal (2) G-P(sol) polarization free energy of solvation -28.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds