Wall clock time and date at job start Mon Mar 30 2020 06:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00279 * 2 1 4 4 H 1.48498 * 109.46953 * 269.99936 * 3 2 1 5 5 H 1.48507 * 109.46965 * 29.99506 * 3 2 1 6 6 H 1.48494 * 109.47539 * 149.99897 * 3 2 1 7 7 C 1.37876 * 119.99732 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99929 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00245 * 0.02562 * 7 2 1 10 10 H 1.09000 * 108.70561 * 61.53805 * 9 7 2 11 11 C 1.54257 * 108.87007 * 303.07434 * 9 7 2 12 12 S 1.83959 * 102.58176 * 263.70939 * 11 9 7 13 13 C 1.83955 * 94.80588 * 325.50391 * 12 11 9 14 14 H 1.08998 * 110.95300 * 276.14959 * 13 12 11 15 15 C 1.50698 * 110.78621 * 152.76351 * 13 12 11 16 16 C 1.38289 * 119.97869 * 307.07247 * 15 13 12 17 17 C 1.38237 * 120.11494 * 180.27323 * 16 15 13 18 18 C 1.38167 * 120.05858 * 359.74537 * 17 16 15 19 19 C 1.38709 * 119.93745 * 0.02562 * 18 17 16 20 20 O 1.35906 * 120.05198 * 179.97438 * 19 18 17 21 21 C 1.38125 * 119.96886 * 126.83696 * 15 13 12 22 22 C 1.52342 * 108.86692 * 179.97438 * 9 7 2 23 23 H 1.08993 * 108.75521 * 0.08268 * 22 9 7 24 24 N 1.46894 * 108.86586 * 241.63792 * 22 9 7 25 25 H 0.96999 * 120.00170 * 0.02562 * 1 2 3 26 26 H 1.09004 * 110.78642 * 21.98260 * 11 9 7 27 27 H 1.09002 * 110.78390 * 145.24247 * 11 9 7 28 28 H 1.08001 * 119.93832 * 0.02562 * 16 15 13 29 29 H 1.08006 * 119.97272 * 179.72959 * 17 16 15 30 30 H 1.07993 * 120.03379 * 179.97438 * 18 17 16 31 31 H 0.96696 * 114.00369 * 270.02003 * 20 19 18 32 32 H 1.08002 * 120.03152 * 0.02562 * 21 15 13 33 33 H 1.00907 * 110.99829 * 175.47407 * 24 22 9 34 34 H 1.00899 * 111.00643 * 299.42106 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 1 0.6504 -2.5561 -0.9073 11 6 0.3112 -2.5327 1.2233 12 16 1.2987 -3.4675 2.4622 13 6 2.0926 -4.5726 1.2244 14 1 1.4478 -5.4188 0.9871 15 6 3.4359 -5.0476 1.7152 16 6 4.3797 -4.1309 2.1409 17 6 5.6149 -4.5631 2.5864 18 6 5.9076 -5.9132 2.6124 19 6 4.9610 -6.8350 2.1904 20 8 5.2466 -8.1635 2.2144 21 6 3.7217 -6.3987 1.7441 22 6 2.2531 -3.6466 0.0005 23 1 3.2609 -3.2316 0.0020 24 7 2.0682 -4.4387 -1.2226 25 1 -0.4850 0.8400 -0.0004 26 1 0.1013 -1.5234 1.5777 27 1 -0.6141 -3.0578 0.9858 28 1 4.1528 -3.0752 2.1215 29 1 6.3519 -3.8449 2.9142 30 1 6.8728 -6.2504 2.9601 31 1 5.6450 -8.4950 1.3981 32 1 2.9831 -7.1145 1.4148 33 1 2.7651 -5.1651 -1.2918 34 1 1.1373 -4.8256 -1.2657 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259898718.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:32 Heat of formation + Delta-G solvation = -39.851398 kcal Electronic energy + Delta-G solvation = -17834.527592 eV Core-core repulsion = 15050.327081 eV Total energy + Delta-G solvation = -2784.200511 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.82242 -38.76266 -37.38352 -35.00671 -32.77248 -31.75686 -30.80630 -28.13434 -27.34494 -24.81145 -23.53062 -22.60372 -20.78699 -19.11771 -18.61315 -17.48185 -17.27468 -16.96428 -16.36864 -16.21425 -15.92012 -15.67272 -15.07662 -14.77531 -14.37016 -13.99881 -13.75625 -13.60522 -12.98495 -12.88723 -12.76190 -12.54403 -12.47902 -12.38116 -12.04229 -11.70621 -11.40440 -11.08850 -10.98976 -10.41530 -9.98902 -9.61968 -9.34478 -8.50679 -8.13445 -6.23093 0.13402 0.33433 1.22883 1.41501 1.43605 1.52375 1.60669 2.43037 2.70791 3.15827 3.24345 3.62738 3.76943 3.81195 3.98282 4.18649 4.24453 4.37730 4.52443 4.57577 4.60158 4.74956 4.92686 4.99379 5.03206 5.40258 5.47576 5.53801 5.58593 5.63714 5.82595 5.87879 6.28332 6.32005 6.68326 6.81500 6.88212 7.43308 8.92482 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.026684 B = 0.005950 C = 0.005555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.081070 B = 4705.027407 C = 5039.196670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.015 3.985 3 Si 0.949 3.051 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.269 1.269 7 C -0.509 4.509 8 H 0.052 0.948 9 C 0.046 3.954 10 H 0.023 0.977 11 C -0.023 4.023 12 S -0.342 6.342 13 C -0.014 4.014 14 H 0.102 0.898 15 C -0.057 4.057 16 C -0.121 4.121 17 C -0.103 4.103 18 C -0.144 4.144 19 C 0.104 3.896 20 O -0.506 6.506 21 C -0.141 4.141 22 C 0.119 3.881 23 H 0.074 0.926 24 N -0.836 5.836 25 H 0.262 0.738 26 H 0.094 0.906 27 H 0.056 0.944 28 H 0.114 0.886 29 H 0.147 0.853 30 H 0.151 0.849 31 H 0.411 0.589 32 H 0.138 0.862 33 H 0.345 0.655 34 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.533 -13.181 1.887 16.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.184 4.184 3 Si 0.775 3.225 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.194 1.194 7 C -0.547 4.547 8 H 0.070 0.930 9 C 0.025 3.975 10 H 0.041 0.959 11 C -0.172 4.172 12 S -0.114 6.114 13 C -0.144 4.144 14 H 0.120 0.880 15 C -0.058 4.058 16 C -0.141 4.141 17 C -0.121 4.121 18 C -0.163 4.163 19 C 0.059 3.941 20 O -0.319 6.319 21 C -0.162 4.162 22 C 0.006 3.994 23 H 0.092 0.908 24 N -0.366 5.366 25 H 0.071 0.929 26 H 0.112 0.888 27 H 0.075 0.925 28 H 0.132 0.868 29 H 0.165 0.835 30 H 0.169 0.831 31 H 0.270 0.730 32 H 0.155 0.845 33 H 0.159 0.841 34 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 9.328 -12.229 3.253 15.721 hybrid contribution -0.244 0.362 -0.994 1.086 sum 9.084 -11.866 2.260 15.114 Atomic orbital electron populations 1.69993 1.06954 1.27326 1.51384 1.25618 0.95641 1.02114 0.95017 0.85678 0.78890 0.79799 0.78107 1.20281 1.21133 1.19351 1.21438 0.92653 0.91015 1.49584 0.92977 1.19094 0.92326 0.93077 0.92964 0.95919 1.24194 0.97136 1.00704 0.95125 1.87595 1.58705 1.45038 1.20021 1.23752 0.95646 0.99050 0.95988 0.87963 1.19231 0.93518 0.93475 0.99614 1.21244 0.94057 0.99988 0.98805 1.21260 0.96240 0.96145 0.98421 1.21663 1.00412 0.92568 1.01653 1.18393 0.92700 0.83770 0.99225 1.84772 1.84063 1.19403 1.43647 1.21340 0.98211 0.94475 1.02138 1.22121 1.00760 0.91453 0.85053 0.90762 1.58924 1.08694 1.30504 1.38432 0.92905 0.88768 0.92543 0.86787 0.83509 0.83092 0.73024 0.84462 0.84108 0.84411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.28 11.43 21.45 0.25 -51.04 16 2 C 0.01 0.79 5.03 84.65 0.43 1.21 16 3 Si 0.95 43.19 29.54 68.60 2.03 45.22 16 4 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 5 H -0.29 -12.86 7.11 99.48 0.71 -12.16 16 6 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 7 C -0.51 -27.00 8.48 25.60 0.22 -26.78 16 8 H 0.05 2.77 7.19 -2.91 -0.02 2.75 16 9 C 0.05 2.17 2.39 -11.33 -0.03 2.14 16 10 H 0.02 1.20 7.78 -2.39 -0.02 1.18 16 11 C -0.02 -1.09 6.41 72.41 0.46 -0.63 16 12 S -0.34 -14.24 22.10 -56.49 -1.25 -15.49 16 13 C -0.01 -0.48 3.15 30.29 0.10 -0.39 16 14 H 0.10 3.14 7.81 -2.39 -0.02 3.12 16 15 C -0.06 -1.74 4.94 -19.88 -0.10 -1.84 16 16 C -0.12 -3.81 8.37 22.28 0.19 -3.62 16 17 C -0.10 -2.55 10.04 22.25 0.22 -2.32 16 18 C -0.14 -3.13 9.99 22.37 0.22 -2.91 16 19 C 0.10 2.36 6.71 22.51 0.15 2.51 16 20 O -0.51 -9.37 13.50 -92.49 -1.25 -10.62 16 21 C -0.14 -3.61 9.62 22.37 0.22 -3.40 16 22 C 0.12 4.59 2.91 45.14 0.13 4.72 16 23 H 0.07 3.12 6.01 -2.39 -0.01 3.11 16 24 N -0.84 -27.05 8.93 -167.76 -1.50 -28.55 16 25 H 0.26 14.07 8.31 -92.71 -0.77 13.30 16 26 H 0.09 5.08 5.94 -2.39 -0.01 5.07 16 27 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 28 H 0.11 4.14 7.75 -2.91 -0.02 4.12 16 29 H 0.15 2.94 8.06 -2.91 -0.02 2.92 16 30 H 0.15 2.46 8.06 -2.91 -0.02 2.43 16 31 H 0.41 3.34 9.06 -74.06 -0.67 2.67 16 32 H 0.14 3.06 7.98 -2.91 -0.02 3.04 16 33 H 0.35 9.12 9.05 -89.69 -0.81 8.31 16 34 H 0.34 10.17 8.94 -89.69 -0.80 9.37 16 Total: -1.00 -62.30 294.93 -0.65 -62.95 By element: Atomic # 1 Polarization: 29.97 SS G_CDS: -1.13 Total: 28.83 kcal Atomic # 6 Polarization: -33.50 SS G_CDS: 2.21 Total: -31.29 kcal Atomic # 7 Polarization: -78.33 SS G_CDS: -1.25 Total: -79.59 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: -1.25 Total: -10.62 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Atomic # 16 Polarization: -14.24 SS G_CDS: -1.25 Total: -15.49 kcal Total: -62.30 -0.65 -62.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259898718.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.094 kcal (2) G-P(sol) polarization free energy of solvation -62.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds