Wall clock time and date at job start Mon Mar 30 2020 06:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86808 * 119.99873 * 2 1 4 4 H 1.48499 * 109.46836 * 0.02562 * 3 2 1 5 5 H 1.48502 * 109.46906 * 120.00056 * 3 2 1 6 6 H 1.48495 * 109.47128 * 240.00287 * 3 2 1 7 7 C 1.37873 * 120.00324 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00547 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99664 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.59970 * 54.79796 * 9 7 2 11 11 C 1.55150 * 109.60262 * 294.47113 * 9 7 2 12 12 S 1.83985 * 100.90951 * 198.63285 * 11 9 7 13 13 C 1.83393 * 95.85195 * 35.35419 * 12 11 9 14 14 H 1.09000 * 110.34083 * 99.12793 * 13 12 11 15 15 C 1.50706 * 110.33902 * 221.38110 * 13 12 11 16 16 C 1.38283 * 119.97213 * 58.54568 * 15 13 12 17 17 C 1.38251 * 120.10651 * 180.02562 * 16 15 13 18 18 C 1.38167 * 120.05830 * 359.97438 * 17 16 15 19 19 C 1.38710 * 119.94220 * 359.97438 * 18 17 16 20 20 O 1.35896 * 120.05289 * 179.97438 * 19 18 17 21 21 C 1.38118 * 119.96577 * 238.26895 * 15 13 12 22 22 C 1.52943 * 109.59957 * 174.93741 * 9 7 2 23 23 H 1.08993 * 108.88671 * 270.81901 * 22 9 7 24 24 N 1.46902 * 108.88898 * 29.23741 * 22 9 7 25 25 H 0.96994 * 120.00082 * 180.02562 * 1 2 3 26 26 H 1.08997 * 111.13605 * 316.54593 * 11 9 7 27 27 H 1.09001 * 111.12934 * 80.67738 * 11 9 7 28 28 H 1.08000 * 119.94796 * 359.97438 * 16 15 13 29 29 H 1.08005 * 119.96739 * 179.97438 * 17 16 15 30 30 H 1.07996 * 120.02526 * 179.97438 * 18 17 16 31 31 H 0.96704 * 114.00350 * 90.00184 * 20 19 18 32 32 H 1.07996 * 120.03215 * 359.97438 * 21 15 13 33 33 H 1.00903 * 110.99666 * 65.61522 * 24 22 9 34 34 H 1.00901 * 110.99907 * 189.56505 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1028 1.6965 -1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.5553 -2.5196 -0.8393 11 6 0.4670 -2.6475 1.3300 12 16 0.1456 -4.4590 1.3447 13 6 1.7355 -4.9373 0.5659 14 1 2.4474 -5.2605 1.3254 15 6 1.5147 -6.0318 -0.4463 16 6 0.6563 -5.8255 -1.5107 17 6 0.4512 -6.8278 -2.4405 18 6 1.1042 -8.0383 -2.3087 19 6 1.9665 -8.2472 -1.2425 20 8 2.6096 -9.4371 -1.1103 21 6 2.1742 -7.2380 -0.3131 22 6 2.2374 -3.6610 -0.1283 23 1 2.3969 -3.8737 -1.1853 24 7 3.5185 -3.2655 0.4721 25 1 -0.4850 -0.8400 0.0004 26 1 1.0785 -2.3500 2.1818 27 1 -0.4648 -2.0826 1.3021 28 1 0.1446 -4.8802 -1.6153 29 1 -0.2200 -6.6645 -3.2707 30 1 0.9433 -8.8211 -3.0351 31 1 3.4677 -9.4721 -1.5549 32 1 2.8483 -7.3968 0.5156 33 1 3.4235 -3.1252 1.4668 34 1 4.2374 -3.9439 0.2696 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259898721.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:34 Heat of formation + Delta-G solvation = -19.391677 kcal Electronic energy + Delta-G solvation = -17819.225827 eV Core-core repulsion = 15035.912516 eV Total energy + Delta-G solvation = -2783.313311 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.83553 -37.61123 -36.30185 -33.27974 -31.57534 -29.93288 -29.58685 -26.89673 -25.17667 -23.26636 -22.47938 -21.45257 -19.40425 -18.10126 -16.90463 -16.56533 -15.92628 -15.83934 -15.20290 -14.97386 -14.09107 -14.00923 -13.74829 -13.41247 -13.12959 -12.75391 -12.36069 -11.94545 -11.82294 -11.61649 -11.45644 -11.14283 -10.83588 -10.53089 -10.29425 -10.10779 -9.91423 -9.79005 -8.91362 -8.60292 -8.48512 -8.35804 -7.83260 -7.17268 -6.31846 -4.05472 1.18807 1.31608 2.49127 3.04527 3.45606 3.46951 3.65588 3.69596 4.15065 4.52732 4.69936 4.87459 5.10591 5.14340 5.20436 5.34704 5.41169 5.50978 5.56592 5.84473 5.90986 6.01112 6.06665 6.30112 6.37716 6.46301 6.48766 6.65797 6.80817 6.85827 7.28211 7.56385 7.68271 7.98891 8.15247 8.63548 8.91241 9.64730 11.01955 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.032188 B = 0.005291 C = 0.005195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.667957 B = 5290.833587 C = 5388.980406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.013 3.987 3 Si 1.071 2.929 4 H -0.286 1.286 5 H -0.289 1.289 6 H -0.289 1.289 7 C -0.570 4.570 8 H 0.084 0.916 9 C 0.040 3.960 10 H 0.035 0.965 11 C -0.043 4.043 12 S -0.343 6.343 13 C -0.033 4.033 14 H 0.089 0.911 15 C -0.041 4.041 16 C -0.100 4.100 17 C -0.103 4.103 18 C -0.150 4.150 19 C 0.098 3.902 20 O -0.501 6.501 21 C -0.139 4.139 22 C 0.109 3.891 23 H 0.079 0.921 24 N -0.812 5.812 25 H 0.268 0.732 26 H 0.077 0.923 27 H 0.099 0.901 28 H 0.133 0.867 29 H 0.127 0.873 30 H 0.125 0.875 31 H 0.387 0.613 32 H 0.124 0.876 33 H 0.338 0.662 34 H 0.319 0.681 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.111 -13.046 -2.667 14.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.190 4.190 3 Si 0.900 3.100 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.215 1.215 7 C -0.610 4.610 8 H 0.102 0.898 9 C 0.019 3.981 10 H 0.053 0.947 11 C -0.191 4.191 12 S -0.112 6.112 13 C -0.164 4.164 14 H 0.107 0.893 15 C -0.043 4.043 16 C -0.119 4.119 17 C -0.121 4.121 18 C -0.169 4.169 19 C 0.054 3.946 20 O -0.310 6.310 21 C -0.160 4.160 22 C -0.004 4.004 23 H 0.097 0.903 24 N -0.338 5.338 25 H 0.080 0.920 26 H 0.096 0.904 27 H 0.117 0.883 28 H 0.151 0.849 29 H 0.145 0.855 30 H 0.143 0.857 31 H 0.242 0.758 32 H 0.142 0.858 33 H 0.152 0.848 34 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 3.404 -11.519 -2.353 12.240 hybrid contribution 1.352 -1.963 0.060 2.385 sum 4.756 -13.483 -2.293 14.480 Atomic orbital electron populations 1.70857 1.07021 1.30568 1.46998 1.25888 0.96472 1.02814 0.93873 0.83490 0.74741 0.75256 0.76507 1.21194 1.21556 1.21548 1.22130 0.96013 0.89055 1.53822 0.89835 1.19682 0.92512 0.94342 0.91556 0.94684 1.25143 1.03949 0.86306 1.03741 1.87589 1.27529 1.15025 1.81100 1.23773 0.96790 0.98270 0.97538 0.89273 1.19442 0.96238 0.93504 0.95165 1.21198 0.97269 0.99988 0.93437 1.21036 0.99264 0.92727 0.99120 1.21366 0.99509 0.97948 0.98049 1.18350 0.96386 0.85061 0.94808 1.84829 1.36738 1.31702 1.77778 1.21234 1.02012 0.92353 1.00362 1.22101 0.91170 0.89420 0.97704 0.90295 1.58934 1.06308 1.50623 1.17976 0.92022 0.90405 0.88292 0.84889 0.85456 0.85706 0.75820 0.85819 0.84822 0.86926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.14 13.41 55.43 0.74 -25.39 16 2 C 0.01 0.35 5.34 -17.82 -0.10 0.26 16 3 Si 1.07 24.36 29.90 -169.99 -5.08 19.27 16 4 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.57 -14.58 8.05 -34.44 -0.28 -14.86 16 8 H 0.08 2.16 6.38 -52.49 -0.33 1.82 16 9 C 0.04 0.90 2.02 -90.66 -0.18 0.72 16 10 H 0.04 0.88 7.81 -51.93 -0.41 0.47 16 11 C -0.04 -0.95 6.26 38.30 0.24 -0.71 16 12 S -0.34 -6.68 22.28 -107.50 -2.40 -9.07 16 13 C -0.03 -0.56 3.23 -27.51 -0.09 -0.65 16 14 H 0.09 1.41 7.66 -51.93 -0.40 1.01 16 15 C -0.04 -0.65 4.73 -104.65 -0.50 -1.14 16 16 C -0.10 -1.54 8.54 -39.56 -0.34 -1.88 16 17 C -0.10 -1.35 10.04 -39.60 -0.40 -1.75 16 18 C -0.15 -1.85 9.99 -39.43 -0.39 -2.25 16 19 C 0.10 1.28 6.71 -39.21 -0.26 1.02 16 20 O -0.50 -5.62 13.50 -19.41 -0.26 -5.88 16 21 C -0.14 -1.96 9.62 -39.43 -0.38 -2.34 16 22 C 0.11 2.05 2.92 -67.37 -0.20 1.86 16 23 H 0.08 1.52 7.24 -51.93 -0.38 1.15 16 24 N -0.81 -14.17 6.94 -4.38 -0.03 -14.20 16 25 H 0.27 7.54 5.38 -40.82 -0.22 7.32 16 26 H 0.08 1.73 8.10 -51.93 -0.42 1.31 16 27 H 0.10 2.35 6.44 -51.93 -0.33 2.01 16 28 H 0.13 2.22 8.01 -52.49 -0.42 1.80 16 29 H 0.13 1.37 8.06 -52.48 -0.42 0.95 16 30 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 31 H 0.39 2.38 9.06 45.56 0.41 2.79 16 32 H 0.12 1.58 7.97 -52.49 -0.42 1.16 16 33 H 0.34 5.85 8.98 -39.29 -0.35 5.50 16 34 H 0.32 4.63 9.08 -39.29 -0.36 4.27 16 LS Contribution 293.00 15.07 4.42 4.42 Total: -1.00 -29.55 293.00 -8.74 -38.29 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: -3.26 Total: 14.30 kcal Atomic # 6 Polarization: -18.87 SS G_CDS: -2.87 Total: -21.73 kcal Atomic # 7 Polarization: -40.31 SS G_CDS: 0.71 Total: -39.60 kcal Atomic # 8 Polarization: -5.62 SS G_CDS: -0.26 Total: -5.88 kcal Atomic # 14 Polarization: 24.36 SS G_CDS: -5.08 Total: 19.27 kcal Atomic # 16 Polarization: -6.68 SS G_CDS: -2.40 Total: -9.07 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -29.55 -8.74 -38.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259898721.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.902 kcal (2) G-P(sol) polarization free energy of solvation -29.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds