Wall clock time and date at job start Mon Mar 30 2020 06:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86808 * 119.99873 * 2 1 4 4 H 1.48499 * 109.46836 * 0.02562 * 3 2 1 5 5 H 1.48502 * 109.46906 * 120.00056 * 3 2 1 6 6 H 1.48495 * 109.47128 * 240.00287 * 3 2 1 7 7 C 1.37873 * 120.00324 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00547 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99664 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.59970 * 54.79796 * 9 7 2 11 11 C 1.55150 * 109.60262 * 294.47113 * 9 7 2 12 12 S 1.83985 * 100.90951 * 198.63285 * 11 9 7 13 13 C 1.83393 * 95.85195 * 35.35419 * 12 11 9 14 14 H 1.09000 * 110.34083 * 99.12793 * 13 12 11 15 15 C 1.50706 * 110.33902 * 221.38110 * 13 12 11 16 16 C 1.38283 * 119.97213 * 58.54568 * 15 13 12 17 17 C 1.38251 * 120.10651 * 180.02562 * 16 15 13 18 18 C 1.38167 * 120.05830 * 359.97438 * 17 16 15 19 19 C 1.38710 * 119.94220 * 359.97438 * 18 17 16 20 20 O 1.35896 * 120.05289 * 179.97438 * 19 18 17 21 21 C 1.38118 * 119.96577 * 238.26895 * 15 13 12 22 22 C 1.52943 * 109.59957 * 174.93741 * 9 7 2 23 23 H 1.08993 * 108.88671 * 270.81901 * 22 9 7 24 24 N 1.46902 * 108.88898 * 29.23741 * 22 9 7 25 25 H 0.96994 * 120.00082 * 180.02562 * 1 2 3 26 26 H 1.08997 * 111.13605 * 316.54593 * 11 9 7 27 27 H 1.09001 * 111.12934 * 80.67738 * 11 9 7 28 28 H 1.08000 * 119.94796 * 359.97438 * 16 15 13 29 29 H 1.08005 * 119.96739 * 179.97438 * 17 16 15 30 30 H 1.07996 * 120.02526 * 179.97438 * 18 17 16 31 31 H 0.96704 * 114.00350 * 90.00184 * 20 19 18 32 32 H 1.07996 * 120.03215 * 359.97438 * 21 15 13 33 33 H 1.00903 * 110.99666 * 65.61522 * 24 22 9 34 34 H 1.00901 * 110.99907 * 189.56505 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1028 1.6965 -1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.5553 -2.5196 -0.8393 11 6 0.4670 -2.6475 1.3300 12 16 0.1456 -4.4590 1.3447 13 6 1.7355 -4.9373 0.5659 14 1 2.4474 -5.2605 1.3254 15 6 1.5147 -6.0318 -0.4463 16 6 0.6563 -5.8255 -1.5107 17 6 0.4512 -6.8278 -2.4405 18 6 1.1042 -8.0383 -2.3087 19 6 1.9665 -8.2472 -1.2425 20 8 2.6096 -9.4371 -1.1103 21 6 2.1742 -7.2380 -0.3131 22 6 2.2374 -3.6610 -0.1283 23 1 2.3969 -3.8737 -1.1853 24 7 3.5185 -3.2655 0.4721 25 1 -0.4850 -0.8400 0.0004 26 1 1.0785 -2.3500 2.1818 27 1 -0.4648 -2.0826 1.3021 28 1 0.1446 -4.8802 -1.6153 29 1 -0.2200 -6.6645 -3.2707 30 1 0.9433 -8.8211 -3.0351 31 1 3.4677 -9.4721 -1.5549 32 1 2.8483 -7.3968 0.5156 33 1 3.4235 -3.1252 1.4668 34 1 4.2374 -3.9439 0.2696 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259898721.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:33 Heat of formation + Delta-G solvation = -39.363587 kcal Electronic energy + Delta-G solvation = -17820.091874 eV Core-core repulsion = 15035.912516 eV Total energy + Delta-G solvation = -2784.179358 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.90245 -38.96672 -37.50198 -35.04683 -32.83596 -31.49904 -30.83966 -28.22375 -27.09585 -24.88547 -23.55791 -22.70113 -21.03095 -19.20039 -18.72329 -17.82880 -17.22139 -17.14412 -16.52042 -16.09330 -15.72832 -15.53251 -15.13015 -14.76621 -14.61895 -14.16655 -13.72134 -13.62471 -13.21203 -12.99235 -12.84251 -12.61008 -12.44692 -12.00543 -11.91653 -11.70292 -11.59511 -11.41563 -10.46700 -10.29518 -10.02337 -9.68538 -9.25730 -8.76184 -8.42337 -6.16861 0.04935 0.27592 1.04995 1.37736 1.60747 1.67829 1.85882 2.64038 2.66583 3.16859 3.28030 3.52651 3.68562 3.77137 3.92891 4.08982 4.16621 4.23888 4.28521 4.36758 4.49207 4.55098 4.75011 4.85684 4.95282 5.06531 5.34719 5.38947 5.44637 5.55625 5.81475 6.07363 6.32646 6.54075 6.65158 6.83636 6.87587 7.60925 8.91145 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.032188 B = 0.005291 C = 0.005195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.667957 B = 5290.833587 C = 5388.980406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.037 4.037 3 Si 1.114 2.886 4 H -0.295 1.295 5 H -0.272 1.272 6 H -0.276 1.276 7 C -0.569 4.569 8 H 0.084 0.916 9 C 0.038 3.962 10 H 0.002 0.998 11 C -0.036 4.036 12 S -0.345 6.345 13 C -0.014 4.014 14 H 0.107 0.893 15 C -0.060 4.060 16 C -0.121 4.121 17 C -0.102 4.102 18 C -0.144 4.144 19 C 0.104 3.896 20 O -0.505 6.505 21 C -0.143 4.143 22 C 0.121 3.879 23 H 0.073 0.927 24 N -0.818 5.818 25 H 0.257 0.743 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.109 0.891 29 H 0.148 0.852 30 H 0.153 0.847 31 H 0.411 0.589 32 H 0.137 0.863 33 H 0.341 0.659 34 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.902 -15.132 -3.063 16.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.235 4.235 3 Si 0.938 3.062 4 H -0.222 1.222 5 H -0.198 1.198 6 H -0.202 1.202 7 C -0.609 4.609 8 H 0.102 0.898 9 C 0.017 3.983 10 H 0.020 0.980 11 C -0.185 4.185 12 S -0.115 6.115 13 C -0.145 4.145 14 H 0.125 0.875 15 C -0.062 4.062 16 C -0.141 4.141 17 C -0.120 4.120 18 C -0.163 4.163 19 C 0.060 3.940 20 O -0.319 6.319 21 C -0.163 4.163 22 C 0.008 3.992 23 H 0.092 0.908 24 N -0.347 5.347 25 H 0.068 0.932 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.127 0.873 29 H 0.166 0.834 30 H 0.170 0.830 31 H 0.270 0.730 32 H 0.155 0.845 33 H 0.154 0.846 34 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 5.239 -13.639 -2.756 14.868 hybrid contribution 0.835 -1.499 0.112 1.719 sum 6.073 -15.137 -2.644 16.523 Atomic orbital electron populations 1.70950 1.08077 1.30040 1.49689 1.27105 0.96513 1.06238 0.93612 0.82923 0.73893 0.71762 0.77594 1.22164 1.19782 1.20175 1.22417 0.96158 0.90156 1.52155 0.89797 1.19586 0.92693 0.95284 0.90721 0.97983 1.24695 1.02477 0.88392 1.02899 1.87545 1.30156 1.12193 1.81581 1.23732 0.94943 0.97855 0.97922 0.87463 1.19338 0.97734 0.93918 0.95173 1.21147 0.98177 0.99981 0.94795 1.21266 0.99305 0.92405 0.98975 1.21677 0.98338 0.98044 0.98217 1.18415 0.96184 0.85117 0.94295 1.84774 1.38310 1.30461 1.78320 1.21358 1.01944 0.91857 1.01132 1.21747 0.90827 0.88807 0.97838 0.90836 1.58785 1.06120 1.51735 1.18105 0.93177 0.90899 0.90889 0.87297 0.83391 0.82968 0.72975 0.84497 0.84558 0.84572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.02 13.41 21.45 0.29 -55.74 16 2 C -0.04 -2.03 5.34 84.65 0.45 -1.58 16 3 Si 1.11 49.34 29.90 68.60 2.05 51.39 16 4 H -0.30 -13.44 7.11 99.48 0.71 -12.74 16 5 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 6 H -0.28 -11.54 7.11 99.48 0.71 -10.84 16 7 C -0.57 -29.52 8.05 25.60 0.21 -29.31 16 8 H 0.08 4.30 6.38 -2.91 -0.02 4.28 16 9 C 0.04 1.77 2.02 -10.82 -0.02 1.75 16 10 H 0.00 0.11 7.81 -2.39 -0.02 0.09 16 11 C -0.04 -1.65 6.26 72.72 0.46 -1.19 16 12 S -0.35 -13.56 22.28 -56.49 -1.26 -14.82 16 13 C -0.01 -0.47 3.23 30.09 0.10 -0.37 16 14 H 0.11 3.16 7.66 -2.39 -0.02 3.14 16 15 C -0.06 -1.79 4.73 -19.88 -0.09 -1.88 16 16 C -0.12 -3.71 8.54 22.28 0.19 -3.52 16 17 C -0.10 -2.46 10.04 22.26 0.22 -2.24 16 18 C -0.14 -3.08 9.99 22.37 0.22 -2.85 16 19 C 0.10 2.37 6.71 22.51 0.15 2.52 16 20 O -0.51 -9.31 13.50 -92.39 -1.25 -10.56 16 21 C -0.14 -3.62 9.62 22.37 0.22 -3.41 16 22 C 0.12 4.53 2.92 45.13 0.13 4.66 16 23 H 0.07 2.84 7.24 -2.39 -0.02 2.82 16 24 N -0.82 -27.50 6.94 -167.77 -1.16 -28.66 16 25 H 0.26 15.29 5.38 -92.71 -0.50 14.79 16 26 H 0.07 3.32 8.10 -2.39 -0.02 3.30 16 27 H 0.07 3.68 6.44 -2.39 -0.02 3.66 16 28 H 0.11 3.80 8.01 -2.91 -0.02 3.78 16 29 H 0.15 2.87 8.06 -2.91 -0.02 2.85 16 30 H 0.15 2.42 8.06 -2.91 -0.02 2.39 16 31 H 0.41 3.31 9.06 -74.05 -0.67 2.63 16 32 H 0.14 3.05 7.97 -2.91 -0.02 3.03 16 33 H 0.34 11.31 8.98 -89.69 -0.81 10.50 16 34 H 0.34 9.10 9.08 -89.69 -0.81 8.28 16 Total: -1.00 -64.39 293.00 0.03 -64.36 By element: Atomic # 1 Polarization: 32.34 SS G_CDS: -0.87 Total: 31.47 kcal Atomic # 6 Polarization: -39.66 SS G_CDS: 2.23 Total: -37.43 kcal Atomic # 7 Polarization: -83.53 SS G_CDS: -0.88 Total: -84.40 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: -1.25 Total: -10.56 kcal Atomic # 14 Polarization: 49.34 SS G_CDS: 2.05 Total: 51.39 kcal Atomic # 16 Polarization: -13.56 SS G_CDS: -1.26 Total: -14.82 kcal Total: -64.39 0.03 -64.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259898721.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.994 kcal (2) G-P(sol) polarization free energy of solvation -64.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds