Wall clock time and date at job start Mon Mar 30 2020 06:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 120.00108 * 2 1 4 4 H 1.48496 * 109.47275 * 180.02562 * 3 2 1 5 5 H 1.48509 * 109.46794 * 299.99966 * 3 2 1 6 6 H 1.48501 * 109.46904 * 59.99522 * 3 2 1 7 7 C 1.37873 * 120.00298 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00471 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99960 * 0.02562 * 7 2 1 10 10 H 1.09003 * 109.60026 * 59.67335 * 9 7 2 11 11 C 1.55155 * 109.45523 * 299.44382 * 9 7 2 12 12 S 1.83983 * 100.91236 * 198.71984 * 11 9 7 13 13 C 1.83393 * 95.85108 * 35.34803 * 12 11 9 14 14 H 1.09003 * 110.34063 * 99.12835 * 13 12 11 15 15 C 1.50700 * 110.34273 * 221.26932 * 13 12 11 16 16 C 1.38290 * 119.96934 * 47.19651 * 15 13 12 17 17 C 1.38243 * 120.11399 * 179.97438 * 16 15 13 18 18 C 1.38164 * 120.05181 * 0.04270 * 17 16 15 19 19 C 1.38707 * 119.95010 * 359.97438 * 18 17 16 20 20 O 1.35898 * 120.06136 * 180.02562 * 19 18 17 21 21 C 1.38119 * 119.97670 * 226.91327 * 15 13 12 22 22 C 1.52939 * 109.60673 * 179.97438 * 9 7 2 23 23 H 1.09003 * 108.88638 * 29.05860 * 22 9 7 24 24 N 1.46898 * 108.77732 * 270.56758 * 22 9 7 25 25 H 0.97000 * 119.99901 * 359.97438 * 1 2 3 26 26 H 1.09005 * 111.13075 * 80.80742 * 11 9 7 27 27 H 1.09002 * 111.12782 * 316.63267 * 11 9 7 28 28 H 1.08000 * 119.94500 * 359.97016 * 16 15 13 29 29 H 1.07997 * 119.97397 * 180.02562 * 17 16 15 30 30 H 1.08006 * 120.02980 * 179.97438 * 18 17 16 31 31 H 0.96692 * 114.00523 * 89.99990 * 20 19 18 32 32 H 1.08004 * 120.02481 * 0.02562 * 21 15 13 33 33 H 1.00898 * 110.99723 * 183.72636 * 24 22 9 34 34 H 1.00902 * 110.99574 * 307.67402 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6196 -2.5568 -0.8860 11 6 0.3694 -2.5868 1.2742 12 16 0.0449 -4.3963 1.3492 13 6 1.6878 -4.9073 0.7145 14 1 2.3404 -5.1935 1.5394 15 6 1.5418 -6.0500 -0.2571 16 6 0.5903 -5.9878 -1.2587 17 6 0.4541 -7.0340 -2.1520 18 6 1.2682 -8.1452 -2.0454 19 6 2.2232 -8.2103 -1.0415 20 8 3.0255 -9.3019 -0.9349 21 6 2.3623 -7.1559 -0.1502 22 6 2.2423 -3.6639 0.0005 23 1 3.1575 -3.3483 0.5015 24 7 2.5592 -4.0151 -1.3902 25 1 -0.4850 0.8401 0.0004 26 1 -0.5571 -2.0262 1.1501 27 1 0.9162 -2.2488 2.1546 28 1 -0.0476 -5.1204 -1.3432 29 1 -0.2895 -6.9829 -2.9336 30 1 1.1613 -8.9626 -2.7432 31 1 3.8474 -9.2369 -1.4402 32 1 3.1080 -7.2022 0.6296 33 1 3.1650 -4.8209 -1.4305 34 1 1.7175 -4.1684 -1.9252 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259898724.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:35 Heat of formation + Delta-G solvation = -18.305935 kcal Electronic energy + Delta-G solvation = -17922.462366 eV Core-core repulsion = 15139.196137 eV Total energy + Delta-G solvation = -2783.266230 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.95936 -37.64474 -35.96450 -33.20058 -31.30091 -30.13910 -29.54287 -27.15197 -25.33066 -23.08682 -22.59783 -21.33555 -19.29664 -17.98714 -16.88598 -16.33760 -15.84915 -15.54019 -15.02951 -14.66649 -14.47306 -14.12646 -13.90190 -13.71120 -13.04301 -12.48009 -12.24535 -12.08709 -11.77564 -11.38880 -11.24466 -10.93798 -10.81552 -10.67753 -10.54275 -10.38393 -9.90997 -9.46726 -8.87112 -8.81526 -8.50100 -8.48343 -7.98250 -7.00739 -6.14214 -4.17443 1.22038 1.32453 2.60718 3.21146 3.29549 3.34373 3.38278 3.67849 4.17146 4.35703 4.74550 4.93219 5.11482 5.16453 5.30757 5.41126 5.48605 5.53080 5.60166 5.89152 5.96776 6.15751 6.38211 6.47612 6.50738 6.56010 6.60565 6.68380 6.83187 7.23981 7.50716 7.58676 7.83518 7.84515 8.02876 8.20571 8.84086 9.46854 10.94158 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.033771 B = 0.005401 C = 0.005158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.903246 B = 5183.178847 C = 5426.944929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.062 3.938 3 Si 0.897 3.103 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.499 4.499 8 H 0.063 0.937 9 C 0.057 3.943 10 H 0.046 0.954 11 C -0.022 4.022 12 S -0.355 6.355 13 C -0.037 4.037 14 H 0.090 0.910 15 C -0.042 4.042 16 C -0.106 4.106 17 C -0.103 4.103 18 C -0.149 4.149 19 C 0.100 3.900 20 O -0.501 6.501 21 C -0.140 4.140 22 C 0.101 3.899 23 H 0.083 0.917 24 N -0.825 5.825 25 H 0.262 0.738 26 H 0.115 0.885 27 H 0.072 0.928 28 H 0.138 0.862 29 H 0.128 0.872 30 H 0.124 0.876 31 H 0.387 0.613 32 H 0.126 0.874 33 H 0.325 0.675 34 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.548 -12.636 -2.939 13.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.141 4.141 3 Si 0.725 3.275 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.539 4.539 8 H 0.081 0.919 9 C 0.036 3.964 10 H 0.064 0.936 11 C -0.170 4.170 12 S -0.125 6.125 13 C -0.168 4.168 14 H 0.109 0.891 15 C -0.044 4.044 16 C -0.125 4.125 17 C -0.122 4.122 18 C -0.168 4.168 19 C 0.055 3.945 20 O -0.311 6.311 21 C -0.160 4.160 22 C -0.012 4.012 23 H 0.101 0.899 24 N -0.355 5.355 25 H 0.072 0.928 26 H 0.133 0.867 27 H 0.090 0.910 28 H 0.156 0.844 29 H 0.145 0.855 30 H 0.142 0.858 31 H 0.242 0.758 32 H 0.144 0.856 33 H 0.138 0.862 34 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 2.290 -12.597 -2.226 12.996 hybrid contribution 1.250 0.721 -0.249 1.464 sum 3.540 -11.876 -2.475 12.637 Atomic orbital electron populations 1.69901 1.05930 1.26834 1.50320 1.24988 0.94917 0.99361 0.94793 0.86445 0.80146 0.83349 0.77554 1.19692 1.20983 1.21072 1.21061 0.93004 0.89224 1.50566 0.91925 1.19493 0.91661 0.91909 0.93306 0.93648 1.24845 1.04873 0.85034 1.02272 1.87532 1.22512 1.15667 1.86801 1.23644 0.96609 0.97579 0.98976 0.89143 1.19441 0.95337 0.94013 0.95624 1.21329 0.97685 0.99483 0.94025 1.21041 0.98901 0.93047 0.99173 1.21371 0.97980 0.98950 0.98538 1.18357 0.94004 0.86682 0.95424 1.84823 1.34679 1.38009 1.73570 1.21267 1.01279 0.92688 1.00779 1.22301 1.00326 0.90741 0.87795 0.89893 1.58943 1.21488 1.43524 1.11566 0.92784 0.86651 0.90974 0.84430 0.85454 0.85761 0.75757 0.85626 0.86246 0.84676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.11 11.77 55.43 0.65 -23.45 16 2 C 0.06 1.61 5.31 -17.82 -0.09 1.52 16 3 Si 0.90 20.56 29.54 -169.99 -5.02 15.53 16 4 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 7 C -0.50 -12.82 8.43 -34.44 -0.29 -13.11 16 8 H 0.06 1.63 7.54 -52.48 -0.40 1.23 16 9 C 0.06 1.31 2.09 -90.66 -0.19 1.12 16 10 H 0.05 1.15 7.74 -51.93 -0.40 0.75 16 11 C -0.02 -0.50 6.17 38.30 0.24 -0.27 16 12 S -0.35 -7.03 21.66 -107.50 -2.33 -9.35 16 13 C -0.04 -0.65 3.52 -27.50 -0.10 -0.74 16 14 H 0.09 1.50 7.96 -51.93 -0.41 1.09 16 15 C -0.04 -0.64 3.27 -104.65 -0.34 -0.98 16 16 C -0.11 -1.57 6.93 -39.56 -0.27 -1.85 16 17 C -0.10 -1.29 10.04 -39.61 -0.40 -1.69 16 18 C -0.15 -1.78 9.99 -39.44 -0.39 -2.18 16 19 C 0.10 1.26 6.71 -39.22 -0.26 0.99 16 20 O -0.50 -5.51 13.50 -19.42 -0.26 -5.77 16 21 C -0.14 -1.91 9.54 -39.43 -0.38 -2.29 16 22 C 0.10 1.95 3.20 -67.36 -0.22 1.74 16 23 H 0.08 1.67 7.62 -51.93 -0.40 1.28 16 24 N -0.83 -14.53 8.58 -4.37 -0.04 -14.57 16 25 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 26 H 0.12 2.84 7.08 -51.93 -0.37 2.47 16 27 H 0.07 1.64 8.10 -51.93 -0.42 1.22 16 28 H 0.14 2.25 7.30 -52.49 -0.38 1.86 16 29 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 30 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 31 H 0.39 2.34 9.06 45.56 0.41 2.75 16 32 H 0.13 1.59 8.00 -52.48 -0.42 1.17 16 33 H 0.33 5.01 7.78 -39.29 -0.31 4.71 16 34 H 0.34 5.87 6.12 -39.29 -0.24 5.63 16 LS Contribution 290.28 15.07 4.37 4.37 Total: -1.00 -28.05 290.28 -8.63 -36.68 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: -3.31 Total: 14.30 kcal Atomic # 6 Polarization: -15.05 SS G_CDS: -2.70 Total: -17.74 kcal Atomic # 7 Polarization: -38.63 SS G_CDS: 0.62 Total: -38.02 kcal Atomic # 8 Polarization: -5.51 SS G_CDS: -0.26 Total: -5.77 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.53 kcal Atomic # 16 Polarization: -7.03 SS G_CDS: -2.33 Total: -9.35 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -28.05 -8.63 -36.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259898724.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.376 kcal (2) G-P(sol) polarization free energy of solvation -28.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds