Wall clock time and date at job start Mon Mar 30 2020 06:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 120.00108 * 2 1 4 4 H 1.48496 * 109.47275 * 180.02562 * 3 2 1 5 5 H 1.48509 * 109.46794 * 299.99966 * 3 2 1 6 6 H 1.48501 * 109.46904 * 59.99522 * 3 2 1 7 7 C 1.37873 * 120.00298 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00471 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99960 * 0.02562 * 7 2 1 10 10 H 1.09003 * 109.60026 * 59.67335 * 9 7 2 11 11 C 1.55155 * 109.45523 * 299.44382 * 9 7 2 12 12 S 1.83983 * 100.91236 * 198.71984 * 11 9 7 13 13 C 1.83393 * 95.85108 * 35.34803 * 12 11 9 14 14 H 1.09003 * 110.34063 * 99.12835 * 13 12 11 15 15 C 1.50700 * 110.34273 * 221.26932 * 13 12 11 16 16 C 1.38290 * 119.96934 * 47.19651 * 15 13 12 17 17 C 1.38243 * 120.11399 * 179.97438 * 16 15 13 18 18 C 1.38164 * 120.05181 * 0.04270 * 17 16 15 19 19 C 1.38707 * 119.95010 * 359.97438 * 18 17 16 20 20 O 1.35898 * 120.06136 * 180.02562 * 19 18 17 21 21 C 1.38119 * 119.97670 * 226.91327 * 15 13 12 22 22 C 1.52939 * 109.60673 * 179.97438 * 9 7 2 23 23 H 1.09003 * 108.88638 * 29.05860 * 22 9 7 24 24 N 1.46898 * 108.77732 * 270.56758 * 22 9 7 25 25 H 0.97000 * 119.99901 * 359.97438 * 1 2 3 26 26 H 1.09005 * 111.13075 * 80.80742 * 11 9 7 27 27 H 1.09002 * 111.12782 * 316.63267 * 11 9 7 28 28 H 1.08000 * 119.94500 * 359.97016 * 16 15 13 29 29 H 1.07997 * 119.97397 * 180.02562 * 17 16 15 30 30 H 1.08006 * 120.02980 * 179.97438 * 18 17 16 31 31 H 0.96692 * 114.00523 * 89.99990 * 20 19 18 32 32 H 1.08004 * 120.02481 * 0.02562 * 21 15 13 33 33 H 1.00898 * 110.99723 * 183.72636 * 24 22 9 34 34 H 1.00902 * 110.99574 * 307.67402 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6196 -2.5568 -0.8860 11 6 0.3694 -2.5868 1.2742 12 16 0.0449 -4.3963 1.3492 13 6 1.6878 -4.9073 0.7145 14 1 2.3404 -5.1935 1.5394 15 6 1.5418 -6.0500 -0.2571 16 6 0.5903 -5.9878 -1.2587 17 6 0.4541 -7.0340 -2.1520 18 6 1.2682 -8.1452 -2.0454 19 6 2.2232 -8.2103 -1.0415 20 8 3.0255 -9.3019 -0.9349 21 6 2.3623 -7.1559 -0.1502 22 6 2.2423 -3.6639 0.0005 23 1 3.1575 -3.3483 0.5015 24 7 2.5592 -4.0151 -1.3902 25 1 -0.4850 0.8401 0.0004 26 1 -0.5571 -2.0262 1.1501 27 1 0.9162 -2.2488 2.1546 28 1 -0.0476 -5.1204 -1.3432 29 1 -0.2895 -6.9829 -2.9336 30 1 1.1613 -8.9626 -2.7432 31 1 3.8474 -9.2369 -1.4402 32 1 3.1080 -7.2022 0.6296 33 1 3.1650 -4.8209 -1.4305 34 1 1.7175 -4.1684 -1.9252 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259898724.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:35 Heat of formation + Delta-G solvation = -37.022815 kcal Electronic energy + Delta-G solvation = -17923.273991 eV Core-core repulsion = 15139.196137 eV Total energy + Delta-G solvation = -2784.077854 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.02838 -38.86892 -37.22315 -34.94590 -32.64523 -31.74868 -30.62519 -28.53283 -27.26366 -24.63413 -23.61665 -22.63859 -20.82371 -19.08717 -18.63497 -17.42086 -17.37281 -16.72730 -16.37393 -16.17062 -15.95322 -15.59380 -15.45616 -14.84317 -14.35923 -14.15605 -13.68012 -13.43630 -12.98195 -12.91391 -12.74565 -12.58209 -12.45584 -12.34194 -12.27351 -11.70551 -11.37950 -11.25201 -10.75783 -10.44411 -9.85456 -9.66620 -9.33501 -8.61678 -8.14227 -6.24133 0.13520 0.31839 1.14611 1.40811 1.45225 1.55476 1.56784 2.43782 2.67017 3.16102 3.23127 3.58939 3.80118 3.91010 3.99505 4.16413 4.23743 4.35336 4.47823 4.59095 4.66846 4.77060 4.83799 4.93628 5.01209 5.38199 5.41852 5.45606 5.59211 5.62482 5.82672 5.86290 6.22281 6.35780 6.69284 6.82081 6.88062 7.43183 8.92856 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.033771 B = 0.005401 C = 0.005158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.903246 B = 5183.178847 C = 5426.944929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.017 3.983 3 Si 0.956 3.044 4 H -0.268 1.268 5 H -0.284 1.284 6 H -0.281 1.281 7 C -0.512 4.512 8 H 0.056 0.944 9 C 0.061 3.939 10 H 0.015 0.985 11 C -0.020 4.020 12 S -0.353 6.353 13 C -0.023 4.023 14 H 0.102 0.898 15 C -0.057 4.057 16 C -0.122 4.122 17 C -0.099 4.099 18 C -0.143 4.143 19 C 0.106 3.894 20 O -0.507 6.507 21 C -0.143 4.143 22 C 0.111 3.889 23 H 0.075 0.925 24 N -0.826 5.826 25 H 0.262 0.738 26 H 0.088 0.912 27 H 0.063 0.937 28 H 0.115 0.885 29 H 0.149 0.851 30 H 0.151 0.849 31 H 0.411 0.589 32 H 0.135 0.865 33 H 0.340 0.660 34 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.786 -14.563 -3.652 15.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.183 4.183 3 Si 0.782 3.218 4 H -0.192 1.192 5 H -0.210 1.210 6 H -0.207 1.207 7 C -0.552 4.552 8 H 0.075 0.925 9 C 0.040 3.960 10 H 0.033 0.967 11 C -0.168 4.168 12 S -0.123 6.123 13 C -0.154 4.154 14 H 0.120 0.880 15 C -0.059 4.059 16 C -0.141 4.141 17 C -0.117 4.117 18 C -0.161 4.161 19 C 0.062 3.938 20 O -0.320 6.320 21 C -0.163 4.163 22 C -0.003 4.003 23 H 0.093 0.907 24 N -0.358 5.358 25 H 0.071 0.929 26 H 0.106 0.894 27 H 0.082 0.918 28 H 0.133 0.867 29 H 0.167 0.833 30 H 0.169 0.831 31 H 0.270 0.730 32 H 0.153 0.847 33 H 0.155 0.845 34 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 3.557 -14.543 -2.949 15.259 hybrid contribution 0.895 1.170 -0.086 1.476 sum 4.453 -13.373 -3.035 14.418 Atomic orbital electron populations 1.70021 1.07096 1.27398 1.51166 1.25686 0.95613 1.02311 0.94648 0.85530 0.79104 0.79752 0.77406 1.19230 1.20954 1.20733 1.21336 0.92899 0.90660 1.50266 0.92532 1.19351 0.91793 0.92711 0.92138 0.96669 1.24439 1.03416 0.87268 1.01668 1.87444 1.25006 1.12742 1.87137 1.23614 0.94538 0.97589 0.99632 0.87956 1.19235 0.96871 0.94015 0.95779 1.21219 0.97934 0.99783 0.95156 1.21262 0.99195 0.92364 0.98874 1.21667 0.96864 0.99147 0.98455 1.18401 0.94155 0.86413 0.94856 1.84770 1.35872 1.37057 1.74293 1.21349 1.01140 0.92433 1.01415 1.21952 0.98755 0.90514 0.89047 0.90679 1.58868 1.21904 1.44526 1.10477 0.92862 0.89361 0.91788 0.86706 0.83296 0.83136 0.72995 0.84705 0.84531 0.84470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.07 11.77 21.45 0.25 -50.82 16 2 C 0.02 0.90 5.31 84.65 0.45 1.35 16 3 Si 0.96 42.62 29.54 68.60 2.03 44.64 16 4 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 5 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 6 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 7 C -0.51 -26.88 8.43 25.60 0.22 -26.67 16 8 H 0.06 2.98 7.54 -2.91 -0.02 2.95 16 9 C 0.06 2.88 2.09 -10.82 -0.02 2.85 16 10 H 0.02 0.81 7.74 -2.39 -0.02 0.79 16 11 C -0.02 -0.91 6.17 72.72 0.45 -0.46 16 12 S -0.35 -14.15 21.66 -56.49 -1.22 -15.37 16 13 C -0.02 -0.79 3.52 30.09 0.11 -0.68 16 14 H 0.10 3.25 7.96 -2.39 -0.02 3.23 16 15 C -0.06 -1.66 3.27 -19.88 -0.06 -1.72 16 16 C -0.12 -3.48 6.93 22.28 0.15 -3.32 16 17 C -0.10 -2.22 10.04 22.25 0.22 -2.00 16 18 C -0.14 -2.87 9.99 22.36 0.22 -2.65 16 19 C 0.11 2.31 6.71 22.51 0.15 2.46 16 20 O -0.51 -9.15 13.50 -92.40 -1.25 -10.40 16 21 C -0.14 -3.54 9.54 22.37 0.21 -3.33 16 22 C 0.11 4.28 3.20 45.14 0.14 4.42 16 23 H 0.08 3.02 7.62 -2.39 -0.02 3.01 16 24 N -0.83 -28.71 8.58 -167.74 -1.44 -30.15 16 25 H 0.26 13.97 8.31 -92.71 -0.77 13.20 16 26 H 0.09 4.58 7.08 -2.38 -0.02 4.56 16 27 H 0.06 3.02 8.10 -2.39 -0.02 3.00 16 28 H 0.11 3.81 7.30 -2.91 -0.02 3.79 16 29 H 0.15 2.64 8.06 -2.91 -0.02 2.62 16 30 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 31 H 0.41 3.26 9.06 -74.06 -0.67 2.59 16 32 H 0.14 3.04 8.00 -2.91 -0.02 3.01 16 33 H 0.34 9.99 7.78 -89.70 -0.70 9.29 16 34 H 0.34 11.81 6.12 -89.69 -0.55 11.26 16 Total: -1.00 -60.57 290.28 -0.16 -60.73 By element: Atomic # 1 Polarization: 31.89 SS G_CDS: -0.77 Total: 31.12 kcal Atomic # 6 Polarization: -32.00 SS G_CDS: 2.24 Total: -29.75 kcal Atomic # 7 Polarization: -79.78 SS G_CDS: -1.19 Total: -80.97 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: -1.25 Total: -10.40 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.64 kcal Atomic # 16 Polarization: -14.15 SS G_CDS: -1.22 Total: -15.37 kcal Total: -60.57 -0.16 -60.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259898724.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.707 kcal (2) G-P(sol) polarization free energy of solvation -60.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds