Wall clock time and date at job start Mon Mar 30 2020 06:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 119.99619 * 2 1 4 4 H 1.48504 * 109.47023 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47180 * 299.99864 * 3 2 1 6 6 H 1.48494 * 109.47418 * 60.00075 * 3 2 1 7 7 C 1.37875 * 120.00043 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99704 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00043 * 359.97438 * 7 2 1 10 10 H 1.08995 * 108.85211 * 53.30407 * 9 7 2 11 11 C 1.53713 * 108.88830 * 294.72548 * 9 7 2 12 12 S 1.83398 * 104.96799 * 236.52404 * 11 9 7 13 13 C 1.83988 * 95.85129 * 340.25176 * 12 11 9 14 14 H 1.09007 * 111.12906 * 277.39853 * 13 12 11 15 15 C 1.50699 * 111.13041 * 153.26311 * 13 12 11 16 16 C 1.38292 * 119.97388 * 319.91279 * 15 13 12 17 17 C 1.38241 * 120.10839 * 180.27749 * 16 15 13 18 18 C 1.38166 * 120.06266 * 359.74193 * 17 16 15 19 19 C 1.38715 * 119.93784 * 0.02562 * 18 17 16 20 20 O 1.35900 * 120.05155 * 179.97438 * 19 18 17 21 21 C 1.38128 * 119.97226 * 139.68214 * 15 13 12 22 22 C 1.52979 * 108.79048 * 171.77637 * 9 7 2 23 23 H 1.08998 * 109.64443 * 270.71666 * 22 9 7 24 24 N 1.46903 * 109.58290 * 30.86600 * 22 9 7 25 25 H 0.96996 * 120.00350 * 359.97438 * 1 2 3 26 26 H 1.08990 * 110.34198 * 117.65065 * 11 9 7 27 27 H 1.08999 * 110.42852 * 355.43834 * 11 9 7 28 28 H 1.08001 * 119.94325 * 0.02562 * 16 15 13 29 29 H 1.07999 * 119.96848 * 179.72852 * 17 16 15 30 30 H 1.07998 * 120.03518 * 179.97438 * 18 17 16 31 31 H 0.96698 * 114.00232 * 270.02148 * 20 19 18 32 32 H 1.07999 * 120.02737 * 359.97438 * 21 15 13 33 33 H 1.00901 * 110.99493 * 64.43620 * 24 22 9 34 34 H 1.00902 * 111.00254 * 188.39281 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 1 0.5409 -2.4958 -0.8273 11 6 0.4760 -2.6262 1.3208 12 16 1.0521 -4.2036 2.0581 13 6 1.7029 -4.9162 0.4916 14 1 0.9052 -5.3756 -0.0923 15 6 2.8104 -5.9017 0.7619 16 6 3.7489 -5.6346 1.7419 17 6 4.7694 -6.5341 1.9883 18 6 4.8510 -7.7050 1.2594 19 6 3.9080 -7.9774 0.2792 20 8 3.9864 -9.1282 -0.4394 21 6 2.8845 -7.0733 0.0340 22 6 2.2460 -3.6425 -0.2083 23 1 2.3664 -3.8342 -1.2745 24 7 3.5448 -3.2767 0.3726 25 1 -0.4850 0.8400 0.0004 26 1 -0.5961 -2.6670 1.1287 27 1 0.7105 -1.7914 1.9812 28 1 3.6868 -4.7200 2.3128 29 1 5.5036 -6.3212 2.7512 30 1 5.6486 -8.4071 1.4520 31 1 4.5140 -9.0529 -1.2463 32 1 2.1490 -7.2833 -0.7283 33 1 3.4755 -3.1685 1.3734 34 1 4.2529 -3.9534 0.1301 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259898728.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:37 Heat of formation + Delta-G solvation = -13.945576 kcal Electronic energy + Delta-G solvation = -17896.437869 eV Core-core repulsion = 15113.360719 eV Total energy + Delta-G solvation = -2783.077150 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.89729 -37.58663 -36.08189 -33.02232 -31.39094 -30.21266 -29.33197 -27.18292 -25.15468 -23.34685 -22.52495 -21.29128 -19.08369 -18.08081 -16.52655 -16.37772 -16.12746 -15.65807 -15.08796 -14.69301 -14.45701 -14.01009 -13.70957 -13.46295 -12.89828 -12.77962 -12.28727 -12.03255 -11.87193 -11.46780 -11.18377 -10.95699 -10.82246 -10.64382 -10.47551 -10.24988 -9.71528 -9.21154 -9.03166 -8.83161 -8.49971 -8.37278 -7.73284 -7.03825 -6.03498 -4.02052 1.19739 1.29699 2.55751 3.21904 3.33196 3.40505 3.46431 3.65033 4.16505 4.45539 4.75924 4.90868 5.12441 5.22752 5.31031 5.37378 5.48727 5.55528 5.64293 5.90847 5.94946 6.08856 6.30526 6.38738 6.43525 6.50260 6.62132 6.75253 6.79775 7.26951 7.55523 7.56759 7.90015 8.00484 8.22010 8.40726 9.13588 9.62508 11.07258 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.033606 B = 0.005390 C = 0.005162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.972835 B = 5194.005078 C = 5422.942173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.051 3.949 3 Si 0.895 3.105 4 H -0.271 1.271 5 H -0.288 1.288 6 H -0.288 1.288 7 C -0.488 4.488 8 H 0.090 0.910 9 C 0.039 3.961 10 H 0.042 0.958 11 C -0.013 4.013 12 S -0.350 6.350 13 C -0.042 4.042 14 H 0.095 0.905 15 C -0.040 4.040 16 C -0.114 4.114 17 C -0.103 4.103 18 C -0.150 4.150 19 C 0.100 3.900 20 O -0.501 6.501 21 C -0.135 4.135 22 C 0.113 3.887 23 H 0.079 0.921 24 N -0.810 5.810 25 H 0.258 0.742 26 H 0.067 0.933 27 H 0.096 0.904 28 H 0.138 0.862 29 H 0.127 0.873 30 H 0.124 0.876 31 H 0.388 0.612 32 H 0.127 0.873 33 H 0.345 0.655 34 H 0.319 0.681 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.707 -12.708 0.300 14.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.150 4.150 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.214 1.214 6 H -0.214 1.214 7 C -0.527 4.527 8 H 0.108 0.892 9 C 0.019 3.981 10 H 0.060 0.940 11 C -0.161 4.161 12 S -0.121 6.121 13 C -0.173 4.173 14 H 0.113 0.887 15 C -0.042 4.042 16 C -0.133 4.133 17 C -0.122 4.122 18 C -0.169 4.169 19 C 0.055 3.945 20 O -0.311 6.311 21 C -0.155 4.155 22 C -0.002 4.002 23 H 0.097 0.903 24 N -0.340 5.340 25 H 0.068 0.932 26 H 0.086 0.914 27 H 0.114 0.886 28 H 0.156 0.844 29 H 0.145 0.855 30 H 0.142 0.858 31 H 0.243 0.757 32 H 0.145 0.855 33 H 0.162 0.838 34 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 7.069 -12.507 1.473 14.441 hybrid contribution 0.334 0.556 -0.975 1.171 sum 7.403 -11.950 0.499 14.066 Atomic orbital electron populations 1.69976 1.05985 1.26517 1.51532 1.25108 0.94835 0.99445 0.95604 0.86471 0.80340 0.83587 0.77216 1.19561 1.21428 1.21416 1.21447 0.94760 0.88065 1.48446 0.89172 1.19273 0.92584 0.93763 0.92477 0.93955 1.24448 1.01248 0.90101 1.00258 1.87456 1.79723 1.26425 1.18533 1.23954 0.97595 0.99025 0.96681 0.88675 1.19319 0.95384 0.93862 0.95627 1.21428 0.94053 1.00352 0.97470 1.21032 0.98371 0.93516 0.99242 1.21372 0.99353 0.97962 0.98189 1.18364 0.95187 0.86210 0.94698 1.84820 1.75247 1.31173 1.39854 1.21250 0.99673 0.93168 1.01449 1.22367 0.91315 0.89277 0.97244 0.90264 1.59040 1.05813 1.51442 1.17744 0.93188 0.91413 0.88578 0.84388 0.85530 0.85764 0.75701 0.85531 0.83835 0.86856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.89 12.63 55.43 0.70 -24.19 16 2 C 0.05 1.34 5.16 -17.82 -0.09 1.25 16 3 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.49 -12.43 7.81 -34.44 -0.27 -12.70 16 8 H 0.09 2.32 6.35 -52.49 -0.33 1.99 16 9 C 0.04 0.90 2.43 -91.41 -0.22 0.68 16 10 H 0.04 1.07 8.13 -51.93 -0.42 0.65 16 11 C -0.01 -0.29 6.15 37.53 0.23 -0.05 16 12 S -0.35 -6.74 20.60 -107.50 -2.21 -8.95 16 13 C -0.04 -0.71 3.45 -26.75 -0.09 -0.80 16 14 H 0.09 1.58 8.04 -51.93 -0.42 1.16 16 15 C -0.04 -0.60 4.54 -104.64 -0.48 -1.07 16 16 C -0.11 -1.59 7.02 -39.56 -0.28 -1.87 16 17 C -0.10 -1.23 10.04 -39.61 -0.40 -1.63 16 18 C -0.15 -1.74 9.99 -39.43 -0.39 -2.13 16 19 C 0.10 1.24 6.70 -39.22 -0.26 0.98 16 20 O -0.50 -5.45 13.50 -19.43 -0.26 -5.71 16 21 C -0.14 -1.84 9.63 -39.43 -0.38 -2.22 16 22 C 0.11 2.12 3.30 -66.58 -0.22 1.90 16 23 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 24 N -0.81 -14.50 6.38 -3.71 -0.02 -14.53 16 25 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 26 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 27 H 0.10 2.37 7.47 -51.93 -0.39 1.98 16 28 H 0.14 2.04 5.56 -52.49 -0.29 1.75 16 29 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 30 H 0.12 1.19 8.06 -52.49 -0.42 0.76 16 31 H 0.39 2.31 9.06 45.56 0.41 2.72 16 32 H 0.13 1.60 8.04 -52.49 -0.42 1.17 16 33 H 0.34 6.29 6.26 -39.29 -0.25 6.04 16 34 H 0.32 5.00 7.21 -39.29 -0.28 4.72 16 LS Contribution 287.02 15.07 4.33 4.33 Total: -1.00 -28.36 287.02 -8.56 -36.93 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: -3.22 Total: 13.83 kcal Atomic # 6 Polarization: -14.81 SS G_CDS: -2.85 Total: -17.66 kcal Atomic # 7 Polarization: -39.39 SS G_CDS: 0.68 Total: -38.71 kcal Atomic # 8 Polarization: -5.45 SS G_CDS: -0.26 Total: -5.71 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: -6.74 SS G_CDS: -2.21 Total: -8.95 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -28.36 -8.56 -36.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259898728.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.980 kcal (2) G-P(sol) polarization free energy of solvation -28.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds