Wall clock time and date at job start Mon Mar 30 2020 06:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 119.99619 * 2 1 4 4 H 1.48504 * 109.47023 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47180 * 299.99864 * 3 2 1 6 6 H 1.48494 * 109.47418 * 60.00075 * 3 2 1 7 7 C 1.37875 * 120.00043 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99704 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00043 * 359.97438 * 7 2 1 10 10 H 1.08995 * 108.85211 * 53.30407 * 9 7 2 11 11 C 1.53713 * 108.88830 * 294.72548 * 9 7 2 12 12 S 1.83398 * 104.96799 * 236.52404 * 11 9 7 13 13 C 1.83988 * 95.85129 * 340.25176 * 12 11 9 14 14 H 1.09007 * 111.12906 * 277.39853 * 13 12 11 15 15 C 1.50699 * 111.13041 * 153.26311 * 13 12 11 16 16 C 1.38292 * 119.97388 * 319.91279 * 15 13 12 17 17 C 1.38241 * 120.10839 * 180.27749 * 16 15 13 18 18 C 1.38166 * 120.06266 * 359.74193 * 17 16 15 19 19 C 1.38715 * 119.93784 * 0.02562 * 18 17 16 20 20 O 1.35900 * 120.05155 * 179.97438 * 19 18 17 21 21 C 1.38128 * 119.97226 * 139.68214 * 15 13 12 22 22 C 1.52979 * 108.79048 * 171.77637 * 9 7 2 23 23 H 1.08998 * 109.64443 * 270.71666 * 22 9 7 24 24 N 1.46903 * 109.58290 * 30.86600 * 22 9 7 25 25 H 0.96996 * 120.00350 * 359.97438 * 1 2 3 26 26 H 1.08990 * 110.34198 * 117.65065 * 11 9 7 27 27 H 1.08999 * 110.42852 * 355.43834 * 11 9 7 28 28 H 1.08001 * 119.94325 * 0.02562 * 16 15 13 29 29 H 1.07999 * 119.96848 * 179.72852 * 17 16 15 30 30 H 1.07998 * 120.03518 * 179.97438 * 18 17 16 31 31 H 0.96698 * 114.00232 * 270.02148 * 20 19 18 32 32 H 1.07999 * 120.02737 * 359.97438 * 21 15 13 33 33 H 1.00901 * 110.99493 * 64.43620 * 24 22 9 34 34 H 1.00902 * 111.00254 * 188.39281 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 1 0.5409 -2.4958 -0.8273 11 6 0.4760 -2.6262 1.3208 12 16 1.0521 -4.2036 2.0581 13 6 1.7029 -4.9162 0.4916 14 1 0.9052 -5.3756 -0.0923 15 6 2.8104 -5.9017 0.7619 16 6 3.7489 -5.6346 1.7419 17 6 4.7694 -6.5341 1.9883 18 6 4.8510 -7.7050 1.2594 19 6 3.9080 -7.9774 0.2792 20 8 3.9864 -9.1282 -0.4394 21 6 2.8845 -7.0733 0.0340 22 6 2.2460 -3.6425 -0.2083 23 1 2.3664 -3.8342 -1.2745 24 7 3.5448 -3.2767 0.3726 25 1 -0.4850 0.8400 0.0004 26 1 -0.5961 -2.6670 1.1287 27 1 0.7105 -1.7914 1.9812 28 1 3.6868 -4.7200 2.3128 29 1 5.5036 -6.3212 2.7512 30 1 5.6486 -8.4071 1.4520 31 1 4.5140 -9.0529 -1.2463 32 1 2.1490 -7.2833 -0.7283 33 1 3.4755 -3.1685 1.3734 34 1 4.2529 -3.9534 0.1301 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259898728.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:36 Heat of formation + Delta-G solvation = -32.579184 kcal Electronic energy + Delta-G solvation = -17897.245883 eV Core-core repulsion = 15113.360719 eV Total energy + Delta-G solvation = -2783.885164 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.91182 -38.83271 -37.31457 -34.75251 -32.68251 -31.77267 -30.47056 -28.55426 -27.08820 -24.86821 -23.51414 -22.50013 -20.69388 -19.09706 -18.29613 -17.69032 -17.36927 -16.82396 -16.34785 -16.27011 -15.96248 -15.36547 -14.97156 -14.78901 -14.50242 -14.17370 -13.92196 -13.27560 -13.05527 -12.87408 -12.74260 -12.64015 -12.39817 -12.34043 -11.97756 -11.59325 -11.34367 -11.04884 -10.82988 -10.36401 -9.88716 -9.53506 -9.18426 -8.62301 -8.06759 -6.09808 0.15638 0.32960 1.12310 1.42802 1.47950 1.55155 1.59568 2.50181 2.68230 3.25976 3.26823 3.62324 3.83934 3.93757 3.99722 4.22136 4.34207 4.37634 4.46938 4.52260 4.61505 4.68943 4.92968 4.93236 5.02019 5.41074 5.43582 5.46173 5.58860 5.68603 5.87758 5.95079 6.30455 6.56703 6.84000 6.87613 7.08913 7.57868 9.03636 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.033606 B = 0.005390 C = 0.005162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.972835 B = 5194.005078 C = 5422.942173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.001 3.999 3 Si 0.953 3.047 4 H -0.265 1.265 5 H -0.289 1.289 6 H -0.289 1.289 7 C -0.489 4.489 8 H 0.089 0.911 9 C 0.038 3.962 10 H 0.010 0.990 11 C -0.008 4.008 12 S -0.336 6.336 13 C -0.026 4.026 14 H 0.098 0.902 15 C -0.056 4.056 16 C -0.125 4.125 17 C -0.098 4.098 18 C -0.144 4.144 19 C 0.103 3.897 20 O -0.508 6.508 21 C -0.143 4.143 22 C 0.120 3.880 23 H 0.084 0.916 24 N -0.813 5.813 25 H 0.256 0.744 26 H 0.050 0.950 27 H 0.068 0.932 28 H 0.127 0.873 29 H 0.152 0.848 30 H 0.150 0.850 31 H 0.410 0.590 32 H 0.131 0.869 33 H 0.344 0.656 34 H 0.335 0.665 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.964 -14.537 0.435 17.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.196 4.196 3 Si 0.781 3.219 4 H -0.189 1.189 5 H -0.216 1.216 6 H -0.216 1.216 7 C -0.528 4.528 8 H 0.107 0.893 9 C 0.017 3.983 10 H 0.029 0.971 11 C -0.157 4.157 12 S -0.106 6.106 13 C -0.157 4.157 14 H 0.116 0.884 15 C -0.058 4.058 16 C -0.145 4.145 17 C -0.116 4.116 18 C -0.162 4.162 19 C 0.059 3.941 20 O -0.321 6.321 21 C -0.164 4.164 22 C 0.005 3.995 23 H 0.102 0.898 24 N -0.345 5.345 25 H 0.065 0.935 26 H 0.068 0.932 27 H 0.086 0.914 28 H 0.145 0.855 29 H 0.170 0.830 30 H 0.168 0.832 31 H 0.269 0.731 32 H 0.149 0.851 33 H 0.160 0.840 34 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 9.356 -14.353 1.589 17.207 hybrid contribution -0.300 0.964 -1.044 1.452 sum 9.056 -13.389 0.546 16.173 Atomic orbital electron populations 1.70098 1.07232 1.26856 1.53051 1.25799 0.95488 1.02428 0.95862 0.85560 0.79436 0.80139 0.76785 1.18863 1.21564 1.21583 1.21718 0.94819 0.89153 1.47099 0.89271 1.19224 0.92718 0.94835 0.91513 0.97147 1.23968 1.00154 0.91632 0.99920 1.87325 1.79657 1.23862 1.19772 1.23892 0.98437 0.98655 0.94718 0.88384 1.19122 0.95264 0.94114 0.97269 1.21399 0.94855 1.00696 0.97517 1.21295 0.97911 0.92952 0.99402 1.21683 0.99445 0.98018 0.97092 1.18431 0.94752 0.86061 0.94899 1.84767 1.75974 1.30325 1.41065 1.21337 1.00447 0.93017 1.01557 1.22070 0.90854 0.88735 0.97840 0.89848 1.58925 1.05647 1.52285 1.17605 0.93522 0.93163 0.91350 0.85495 0.82996 0.83211 0.73052 0.85061 0.84014 0.85046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.14 12.63 21.45 0.27 -52.87 16 2 C 0.00 0.07 5.16 84.65 0.44 0.51 16 3 Si 0.95 43.63 29.54 68.60 2.03 45.66 16 4 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 5 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 6 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 7 C -0.49 -25.31 7.81 25.60 0.20 -25.11 16 8 H 0.09 4.59 6.35 -2.91 -0.02 4.57 16 9 C 0.04 1.77 2.43 -11.31 -0.03 1.74 16 10 H 0.01 0.55 8.13 -2.39 -0.02 0.53 16 11 C -0.01 -0.38 6.15 72.22 0.44 0.06 16 12 S -0.34 -12.90 20.60 -56.49 -1.16 -14.06 16 13 C -0.03 -0.88 3.45 30.58 0.11 -0.77 16 14 H 0.10 3.19 8.04 -2.38 -0.02 3.18 16 15 C -0.06 -1.56 4.54 -19.88 -0.09 -1.65 16 16 C -0.13 -3.23 7.02 22.28 0.16 -3.07 16 17 C -0.10 -1.98 10.04 22.25 0.22 -1.76 16 18 C -0.14 -2.74 9.99 22.37 0.22 -2.52 16 19 C 0.10 2.22 6.70 22.51 0.15 2.37 16 20 O -0.51 -9.24 13.50 -92.42 -1.25 -10.49 16 21 C -0.14 -3.55 9.63 22.37 0.22 -3.34 16 22 C 0.12 4.49 3.30 45.64 0.15 4.64 16 23 H 0.08 3.06 8.14 -2.39 -0.02 3.04 16 24 N -0.81 -28.36 6.38 -165.65 -1.06 -29.42 16 25 H 0.26 14.12 8.31 -92.71 -0.77 13.34 16 26 H 0.05 2.45 8.14 -2.39 -0.02 2.43 16 27 H 0.07 3.53 7.47 -2.39 -0.02 3.51 16 28 H 0.13 3.55 5.56 -2.91 -0.02 3.54 16 29 H 0.15 2.28 8.06 -2.91 -0.02 2.26 16 30 H 0.15 2.11 8.06 -2.91 -0.02 2.09 16 31 H 0.41 3.36 9.06 -74.06 -0.67 2.69 16 32 H 0.13 3.04 8.04 -2.91 -0.02 3.02 16 33 H 0.34 12.28 6.26 -89.69 -0.56 11.72 16 34 H 0.34 9.92 7.21 -89.69 -0.65 9.27 16 Total: -1.00 -61.20 287.02 0.29 -60.92 By element: Atomic # 1 Polarization: 29.89 SS G_CDS: -0.73 Total: 29.16 kcal Atomic # 6 Polarization: -31.08 SS G_CDS: 2.19 Total: -28.89 kcal Atomic # 7 Polarization: -81.51 SS G_CDS: -0.79 Total: -82.29 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: -1.25 Total: -10.49 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Atomic # 16 Polarization: -12.90 SS G_CDS: -1.16 Total: -14.06 kcal Total: -61.20 0.29 -60.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259898728.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.336 kcal (2) G-P(sol) polarization free energy of solvation -61.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds