Wall clock time and date at job start Mon Mar 30 2020 06:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00127 * 2 1 4 4 H 1.48493 * 109.47107 * 265.93537 * 3 2 1 5 5 H 1.48502 * 109.47164 * 25.94098 * 3 2 1 6 6 H 1.48505 * 109.47023 * 145.93528 * 3 2 1 7 7 C 1.37876 * 119.99451 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00591 * 353.25863 * 7 2 1 9 9 C 1.50710 * 119.99599 * 173.25547 * 7 2 1 10 10 H 1.09005 * 107.92916 * 351.96808 * 9 7 2 11 11 C 1.49686 * 108.21540 * 108.86139 * 9 7 2 12 12 C 1.50979 * 113.45986 * 199.27492 * 11 9 7 13 13 C 1.48659 * 111.89877 * 286.62111 * 12 11 9 14 14 O 1.21294 * 116.42885 * 215.61192 * 13 12 11 15 15 N 1.30281 * 127.13960 * 35.61986 * 13 12 11 16 16 C 1.37627 * 136.30958 * 350.00348 * 15 13 12 17 17 C 1.40559 * 114.90093 * 188.22111 * 16 15 13 18 18 C 1.37319 * 121.49840 * 181.59640 * 17 16 15 19 19 C 1.38428 * 119.53914 * 359.92755 * 18 17 16 20 20 Cl 1.73599 * 120.29429 * 179.78386 * 19 18 17 21 21 C 1.37688 * 119.41381 * 359.83147 * 19 18 17 22 22 C 1.37838 * 126.36796 * 9.51420 * 16 15 13 23 23 H 0.97003 * 120.00138 * 0.02562 * 1 2 3 24 24 H 1.09006 * 108.68783 * 320.30787 * 11 9 7 25 25 H 1.08999 * 108.68356 * 78.37773 * 11 9 7 26 26 H 1.09000 * 108.99082 * 47.24634 * 12 11 9 27 27 H 1.08999 * 108.99075 * 165.99336 * 12 11 9 28 28 H 0.97005 * 111.84165 * 170.03545 * 15 13 12 29 29 H 1.08002 * 119.25189 * 1.32564 * 17 16 15 30 30 H 1.07996 * 120.22852 * 179.97438 * 18 17 16 31 31 H 1.07997 * 119.25391 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.5826 1.9967 -1.3965 5 1 1.4063 2.6759 0.6125 6 1 3.5011 1.4664 0.7843 7 6 2.0044 -1.1941 0.0005 8 1 1.4700 -2.1261 0.1107 9 6 3.5037 -1.1987 -0.1528 10 1 3.8197 -0.1832 -0.3915 11 6 4.1074 -1.5794 1.1630 12 6 5.5592 -1.1865 1.2944 13 6 6.4450 -2.0555 0.4758 14 8 7.5334 -2.3122 0.9457 15 7 6.1808 -2.5716 -0.6908 16 6 5.0720 -2.6937 -1.4969 17 6 5.2485 -3.5117 -2.6263 18 6 4.2405 -3.7016 -3.5393 19 6 3.0199 -3.0773 -3.3480 20 17 1.7338 -3.2992 -4.4927 21 6 2.8352 -2.2779 -2.2422 22 6 3.8523 -2.0801 -1.3077 23 1 -0.4850 0.8401 -0.0004 24 1 3.5414 -1.0966 1.9597 25 1 4.0275 -2.6597 1.2843 26 1 5.6776 -0.1527 0.9696 27 1 5.8544 -1.2640 2.3407 28 1 6.9664 -2.9727 -1.0944 29 1 6.2000 -3.9984 -2.7818 30 1 4.3987 -4.3342 -4.4001 31 1 1.8817 -1.7924 -2.0953 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259919624.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:43 Heat of formation + Delta-G solvation = -17.717514 kcal Electronic energy + Delta-G solvation = -17890.700766 eV Core-core repulsion = 14969.583251 eV Total energy + Delta-G solvation = -2921.117515 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.86885 -38.72772 -36.27832 -35.56926 -34.64442 -32.36063 -30.95200 -29.36839 -27.66942 -24.17673 -23.71530 -22.26158 -20.13654 -19.20867 -17.78504 -17.34161 -16.38205 -15.95234 -15.25040 -14.75753 -14.50520 -14.05070 -13.59330 -13.33887 -13.20824 -12.84875 -12.46463 -12.30167 -12.10850 -11.53979 -11.25580 -11.04575 -10.93585 -10.82325 -10.29418 -10.12506 -9.96823 -9.91288 -9.63742 -9.42685 -8.71937 -8.29915 -7.55366 -6.28188 -4.29304 1.38966 1.69607 2.58497 2.87363 3.15080 3.22824 3.25908 3.35367 4.09267 4.23192 4.81462 4.96627 5.06466 5.17545 5.43196 5.50539 5.60208 5.67564 5.84674 6.04448 6.16458 6.26911 6.42108 6.50696 6.60195 6.66004 6.91677 6.98391 7.10812 7.35990 7.52342 7.75940 8.19428 8.28247 8.76108 9.31300 10.83482 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.012492 B = 0.011462 C = 0.006419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2240.910702 B = 2442.308408 C = 4360.753384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.078 3.922 3 Si 0.868 3.132 4 H -0.273 1.273 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.518 4.518 8 H 0.081 0.919 9 C 0.038 3.962 10 H 0.048 0.952 11 C -0.105 4.105 12 C -0.143 4.143 13 C 0.531 3.469 14 O -0.565 6.565 15 N -0.640 5.640 16 C 0.153 3.847 17 C -0.165 4.165 18 C -0.095 4.095 19 C -0.068 4.068 20 Cl -0.083 7.083 21 C -0.049 4.049 22 C -0.063 4.063 23 H 0.268 0.732 24 H 0.084 0.916 25 H 0.054 0.946 26 H 0.095 0.905 27 H 0.098 0.902 28 H 0.391 0.609 29 H 0.125 0.875 30 H 0.129 0.871 31 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.795 -3.978 -5.213 10.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.126 4.126 3 Si 0.695 3.305 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.556 4.556 8 H 0.099 0.901 9 C 0.020 3.980 10 H 0.066 0.934 11 C -0.143 4.143 12 C -0.183 4.183 13 C 0.321 3.679 14 O -0.445 6.445 15 N -0.277 5.277 16 C 0.057 3.943 17 C -0.186 4.186 18 C -0.114 4.114 19 C -0.095 4.095 20 Cl -0.055 7.055 21 C -0.068 4.068 22 C -0.067 4.067 23 H 0.078 0.922 24 H 0.102 0.898 25 H 0.073 0.927 26 H 0.113 0.887 27 H 0.117 0.883 28 H 0.224 0.776 29 H 0.143 0.857 30 H 0.146 0.854 31 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 7.816 -3.832 -4.834 9.957 hybrid contribution 0.483 0.730 -0.347 0.942 sum 8.299 -3.102 -5.181 10.264 Atomic orbital electron populations 1.69878 1.06197 1.27380 1.48816 1.25050 0.94708 0.98687 0.94115 0.86976 0.80346 0.84064 0.79080 1.19906 1.21230 1.18918 1.20806 0.88093 0.95136 1.51539 0.90097 1.17389 0.98248 0.94137 0.88246 0.93405 1.20762 0.91266 1.01594 1.00694 1.21268 0.96970 0.99750 1.00309 1.19351 0.88237 0.79906 0.80386 1.90771 1.25172 1.60661 1.67926 1.42152 1.11982 1.55270 1.18304 1.17286 0.87775 0.98141 0.91063 1.20900 1.00041 1.02397 0.95215 1.20513 0.91479 1.00024 0.99388 1.20796 0.90098 1.04164 0.94461 1.98332 1.50748 1.96414 1.59968 1.21872 1.01167 0.94351 0.89424 1.19812 0.89933 0.98394 0.98540 0.92232 0.89791 0.92737 0.88736 0.88333 0.77587 0.85748 0.85355 0.81608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.51 13.96 55.43 0.77 -23.74 16 2 C 0.08 2.00 5.47 -17.82 -0.10 1.90 16 3 Si 0.87 19.41 26.87 -169.99 -4.57 14.84 16 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.26 -5.55 6.90 56.52 0.39 -5.16 16 7 C -0.52 -12.60 6.02 -34.44 -0.21 -12.80 16 8 H 0.08 2.18 8.05 -52.49 -0.42 1.76 16 9 C 0.04 0.79 1.87 -95.18 -0.18 0.61 16 10 H 0.05 1.02 4.62 -51.93 -0.24 0.78 16 11 C -0.11 -1.94 4.63 -29.39 -0.14 -2.08 16 12 C -0.14 -2.34 5.63 -29.87 -0.17 -2.51 16 13 C 0.53 8.98 7.51 -13.91 -0.10 8.87 16 14 O -0.56 -10.73 17.43 5.54 0.10 -10.63 16 15 N -0.64 -9.85 4.78 -11.86 -0.06 -9.91 16 16 C 0.15 2.49 6.64 -84.53 -0.56 1.93 16 17 C -0.16 -2.27 9.51 -39.04 -0.37 -2.64 16 18 C -0.09 -1.34 9.84 -39.85 -0.39 -1.73 16 19 C -0.07 -1.13 6.31 -39.71 -0.25 -1.38 16 20 Cl -0.08 -1.31 28.97 -51.86 -1.50 -2.81 16 21 C -0.05 -0.95 8.68 -39.30 -0.34 -1.29 16 22 C -0.06 -1.20 5.58 -104.91 -0.59 -1.79 16 23 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 24 H 0.08 1.58 7.85 -51.93 -0.41 1.17 16 25 H 0.05 1.00 8.05 -51.93 -0.42 0.59 16 26 H 0.09 1.49 7.98 -51.93 -0.41 1.08 16 27 H 0.10 1.46 8.08 -51.93 -0.42 1.04 16 28 H 0.39 5.15 7.46 -40.82 -0.30 4.85 16 29 H 0.12 1.31 7.70 -52.49 -0.40 0.91 16 30 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 31 H 0.17 3.66 6.22 -52.49 -0.33 3.33 16 LS Contribution 273.18 15.07 4.12 4.12 Total: -1.00 -27.30 273.18 -7.46 -34.76 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -2.93 Total: 6.27 kcal Atomic # 6 Polarization: -9.51 SS G_CDS: -3.39 Total: -12.90 kcal Atomic # 7 Polarization: -34.36 SS G_CDS: 0.72 Total: -33.64 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.10 Total: -10.63 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -4.57 Total: 14.84 kcal Atomic # 17 Polarization: -1.31 SS G_CDS: -1.50 Total: -2.81 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -27.30 -7.46 -34.76 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259919624.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.045 kcal (2) G-P(sol) polarization free energy of solvation -27.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds