Wall clock time and date at job start Mon Mar 30 2020 06:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00127 * 2 1 4 4 H 1.48493 * 109.47107 * 265.93537 * 3 2 1 5 5 H 1.48502 * 109.47164 * 25.94098 * 3 2 1 6 6 H 1.48505 * 109.47023 * 145.93528 * 3 2 1 7 7 C 1.37876 * 119.99451 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00591 * 353.25863 * 7 2 1 9 9 C 1.50710 * 119.99599 * 173.25547 * 7 2 1 10 10 H 1.09005 * 107.92916 * 351.96808 * 9 7 2 11 11 C 1.49686 * 108.21540 * 108.86139 * 9 7 2 12 12 C 1.50979 * 113.45986 * 199.27492 * 11 9 7 13 13 C 1.48659 * 111.89877 * 286.62111 * 12 11 9 14 14 O 1.21294 * 116.42885 * 215.61192 * 13 12 11 15 15 N 1.30281 * 127.13960 * 35.61986 * 13 12 11 16 16 C 1.37627 * 136.30958 * 350.00348 * 15 13 12 17 17 C 1.40559 * 114.90093 * 188.22111 * 16 15 13 18 18 C 1.37319 * 121.49840 * 181.59640 * 17 16 15 19 19 C 1.38428 * 119.53914 * 359.92755 * 18 17 16 20 20 Cl 1.73599 * 120.29429 * 179.78386 * 19 18 17 21 21 C 1.37688 * 119.41381 * 359.83147 * 19 18 17 22 22 C 1.37838 * 126.36796 * 9.51420 * 16 15 13 23 23 H 0.97003 * 120.00138 * 0.02562 * 1 2 3 24 24 H 1.09006 * 108.68783 * 320.30787 * 11 9 7 25 25 H 1.08999 * 108.68356 * 78.37773 * 11 9 7 26 26 H 1.09000 * 108.99082 * 47.24634 * 12 11 9 27 27 H 1.08999 * 108.99075 * 165.99336 * 12 11 9 28 28 H 0.97005 * 111.84165 * 170.03545 * 15 13 12 29 29 H 1.08002 * 119.25189 * 1.32564 * 17 16 15 30 30 H 1.07996 * 120.22852 * 179.97438 * 18 17 16 31 31 H 1.07997 * 119.25391 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.5826 1.9967 -1.3965 5 1 1.4063 2.6759 0.6125 6 1 3.5011 1.4664 0.7843 7 6 2.0044 -1.1941 0.0005 8 1 1.4700 -2.1261 0.1107 9 6 3.5037 -1.1987 -0.1528 10 1 3.8197 -0.1832 -0.3915 11 6 4.1074 -1.5794 1.1630 12 6 5.5592 -1.1865 1.2944 13 6 6.4450 -2.0555 0.4758 14 8 7.5334 -2.3122 0.9457 15 7 6.1808 -2.5716 -0.6908 16 6 5.0720 -2.6937 -1.4969 17 6 5.2485 -3.5117 -2.6263 18 6 4.2405 -3.7016 -3.5393 19 6 3.0199 -3.0773 -3.3480 20 17 1.7338 -3.2992 -4.4927 21 6 2.8352 -2.2779 -2.2422 22 6 3.8523 -2.0801 -1.3077 23 1 -0.4850 0.8401 -0.0004 24 1 3.5414 -1.0966 1.9597 25 1 4.0275 -2.6597 1.2843 26 1 5.6776 -0.1527 0.9696 27 1 5.8544 -1.2640 2.3407 28 1 6.9664 -2.9727 -1.0944 29 1 6.2000 -3.9984 -2.7818 30 1 4.3987 -4.3342 -4.4001 31 1 1.8817 -1.7924 -2.0953 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259919624.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:43 Heat of formation + Delta-G solvation = -33.814854 kcal Electronic energy + Delta-G solvation = -17891.398799 eV Core-core repulsion = 14969.583251 eV Total energy + Delta-G solvation = -2921.815548 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.20060 -40.06649 -37.61904 -37.06172 -35.95649 -34.20420 -32.35184 -30.68730 -29.22377 -25.77032 -25.15618 -23.60709 -21.63631 -20.53405 -19.38696 -18.82349 -17.85735 -17.31680 -16.62144 -16.34057 -15.89887 -15.54623 -15.04701 -14.68197 -14.63298 -14.40466 -14.00269 -13.80302 -13.38455 -12.99166 -12.77256 -12.64600 -12.45537 -12.19207 -11.86079 -11.72269 -11.45714 -11.35224 -11.21744 -11.03311 -10.64961 -9.66296 -8.85926 -8.27363 -6.29882 0.07121 0.41547 1.29568 1.35644 1.38416 1.46370 1.56537 2.09877 2.34584 2.78063 3.07257 3.52555 3.82233 3.94260 4.07163 4.14108 4.32969 4.39433 4.44608 4.70987 4.75138 4.98894 5.04536 5.12420 5.21412 5.32871 5.39155 5.56987 5.65310 5.76629 5.94823 6.30096 6.44274 6.75616 6.92427 7.32552 8.88229 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.012492 B = 0.011462 C = 0.006419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2240.910702 B = 2442.308408 C = 4360.753384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.024 3.976 3 Si 0.923 3.077 4 H -0.272 1.272 5 H -0.292 1.292 6 H -0.238 1.238 7 C -0.501 4.501 8 H 0.038 0.962 9 C 0.041 3.959 10 H 0.044 0.956 11 C -0.099 4.099 12 C -0.140 4.140 13 C 0.534 3.466 14 O -0.584 6.584 15 N -0.631 5.631 16 C 0.155 3.845 17 C -0.144 4.144 18 C -0.081 4.081 19 C -0.073 4.073 20 Cl -0.080 7.080 21 C -0.075 4.075 22 C -0.089 4.089 23 H 0.265 0.735 24 H 0.075 0.925 25 H 0.049 0.951 26 H 0.105 0.895 27 H 0.116 0.884 28 H 0.405 0.595 29 H 0.171 0.829 30 H 0.166 0.834 31 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.016 -4.686 -6.193 13.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.174 4.174 3 Si 0.747 3.253 4 H -0.197 1.197 5 H -0.218 1.218 6 H -0.161 1.161 7 C -0.539 4.539 8 H 0.057 0.943 9 C 0.023 3.977 10 H 0.062 0.938 11 C -0.137 4.137 12 C -0.179 4.179 13 C 0.324 3.676 14 O -0.466 6.466 15 N -0.269 5.269 16 C 0.059 3.941 17 C -0.165 4.165 18 C -0.100 4.100 19 C -0.100 4.100 20 Cl -0.051 7.051 21 C -0.094 4.094 22 C -0.092 4.092 23 H 0.075 0.925 24 H 0.094 0.906 25 H 0.068 0.932 26 H 0.123 0.877 27 H 0.135 0.865 28 H 0.241 0.759 29 H 0.188 0.812 30 H 0.183 0.817 31 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 11.066 -4.558 -5.823 13.310 hybrid contribution -0.550 0.803 -0.125 0.981 sum 10.516 -3.755 -5.948 12.652 Atomic orbital electron populations 1.70027 1.08053 1.27971 1.51813 1.25771 0.95230 1.02111 0.94322 0.86087 0.80030 0.79777 0.79378 1.19705 1.21803 1.16080 1.20899 0.90392 0.93197 1.49378 0.94349 1.17335 0.95420 0.94811 0.90144 0.93818 1.20576 0.92935 1.01217 0.99016 1.21236 0.94823 1.00235 1.01604 1.19334 0.87844 0.79760 0.80673 1.90774 1.25928 1.61433 1.68483 1.41998 1.12227 1.54792 1.17879 1.17288 0.86834 0.97990 0.91964 1.21343 1.01611 1.00382 0.93117 1.20926 0.89861 0.98968 1.00269 1.20916 0.91390 1.03903 0.93777 1.98332 1.50993 1.96314 1.59502 1.21492 0.99984 0.96377 0.91576 1.19574 0.91541 0.99945 0.98141 0.92538 0.90603 0.93186 0.87719 0.86537 0.75875 0.81152 0.81659 0.85750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.86 13.96 21.45 0.30 -54.57 16 2 C 0.02 1.28 5.47 84.65 0.46 1.74 16 3 Si 0.92 40.51 26.87 68.60 1.84 42.36 16 4 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 5 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 6 H -0.24 -9.29 6.90 99.48 0.69 -8.61 16 7 C -0.50 -25.51 6.02 25.60 0.15 -25.35 16 8 H 0.04 2.23 8.05 -2.91 -0.02 2.20 16 9 C 0.04 1.71 1.87 -13.75 -0.03 1.69 16 10 H 0.04 1.82 4.62 -2.38 -0.01 1.81 16 11 C -0.10 -3.59 4.63 28.87 0.13 -3.45 16 12 C -0.14 -4.21 5.63 28.56 0.16 -4.05 16 13 C 0.53 16.43 7.51 87.71 0.66 17.09 16 14 O -0.58 -20.37 17.43 -3.07 -0.05 -20.42 16 15 N -0.63 -17.19 4.78 -312.25 -1.49 -18.69 16 16 C 0.16 4.59 6.64 38.70 0.26 4.84 16 17 C -0.14 -3.28 9.51 22.62 0.22 -3.06 16 18 C -0.08 -1.97 9.84 22.10 0.22 -1.75 16 19 C -0.07 -2.33 6.31 22.19 0.14 -2.19 16 20 Cl -0.08 -2.46 28.97 -2.72 -0.08 -2.54 16 21 C -0.07 -2.94 8.68 22.45 0.19 -2.75 16 22 C -0.09 -3.31 5.58 -20.05 -0.11 -3.42 16 23 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 24 H 0.08 2.83 7.85 -2.38 -0.02 2.82 16 25 H 0.05 1.82 8.05 -2.39 -0.02 1.80 16 26 H 0.10 2.98 7.98 -2.39 -0.02 2.96 16 27 H 0.12 3.12 8.08 -2.39 -0.02 3.10 16 28 H 0.41 8.82 7.46 -92.70 -0.69 8.13 16 29 H 0.17 2.39 7.70 -2.91 -0.02 2.37 16 30 H 0.17 2.85 8.06 -2.91 -0.02 2.83 16 31 H 0.12 5.89 6.22 -2.91 -0.02 5.87 16 Total: -1.00 -62.06 273.18 3.44 -58.62 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: 0.46 Total: 15.89 kcal Atomic # 6 Polarization: -23.12 SS G_CDS: 2.46 Total: -20.66 kcal Atomic # 7 Polarization: -72.06 SS G_CDS: -1.19 Total: -73.25 kcal Atomic # 8 Polarization: -20.37 SS G_CDS: -0.05 Total: -20.42 kcal Atomic # 14 Polarization: 40.51 SS G_CDS: 1.84 Total: 42.36 kcal Atomic # 17 Polarization: -2.46 SS G_CDS: -0.08 Total: -2.54 kcal Total: -62.06 3.44 -58.62 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259919624.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.808 kcal (2) G-P(sol) polarization free energy of solvation -62.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds