Wall clock time and date at job start Mon Mar 30 2020 06:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86805 * 120.00004 * 2 1 4 4 H 1.48498 * 109.46988 * 239.99878 * 3 2 1 5 5 H 1.48497 * 109.46960 * 120.00065 * 3 2 1 6 6 H 1.48495 * 109.46966 * 359.97438 * 3 2 1 7 7 C 1.37878 * 119.99920 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00093 * 187.95534 * 7 2 1 9 9 C 1.50693 * 120.00103 * 7.95560 * 7 2 1 10 10 H 1.08999 * 108.11048 * 24.42634 * 9 7 2 11 11 C 1.49698 * 108.22141 * 267.42297 * 9 7 2 12 12 C 1.51147 * 113.39319 * 160.65015 * 11 9 7 13 13 C 1.48658 * 111.74401 * 73.68452 * 12 11 9 14 14 O 1.21287 * 116.40518 * 144.26493 * 13 12 11 15 15 N 1.30262 * 127.18549 * 324.23779 * 13 12 11 16 16 C 1.37654 * 136.25237 * 9.76484 * 15 13 12 17 17 C 1.40590 * 114.84706 * 171.88935 * 16 15 13 18 18 C 1.37314 * 121.47420 * 178.60490 * 17 16 15 19 19 C 1.38441 * 119.54346 * 0.05053 * 18 17 16 20 20 Cl 1.73594 * 120.29551 * 180.27204 * 19 18 17 21 21 C 1.37678 * 119.40959 * 0.29387 * 19 18 17 22 22 C 1.37789 * 126.39610 * 351.03560 * 16 15 13 23 23 H 0.97006 * 120.00140 * 185.07086 * 1 2 3 24 24 H 1.08993 * 108.68098 * 281.88066 * 11 9 7 25 25 H 1.09000 * 108.67775 * 39.81425 * 11 9 7 26 26 H 1.08994 * 109.13324 * 313.06166 * 12 11 9 27 27 H 1.09001 * 108.94422 * 194.17746 * 12 11 9 28 28 H 0.97005 * 111.87704 * 189.78206 * 15 13 12 29 29 H 1.07994 * 119.26561 * 358.60979 * 17 16 15 30 30 H 1.08002 * 120.22987 * 180.02562 * 18 17 16 31 31 H 1.08006 * 119.25159 * 179.89587 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 3.1028 1.6964 1.2125 6 1 1.2841 2.7464 -0.0006 7 6 2.0045 -1.1941 0.0005 8 1 3.0767 -1.1985 0.1300 9 6 1.2619 -2.4929 -0.1795 10 1 0.3333 -2.2816 -0.7098 11 6 0.9160 -3.0262 1.1759 12 6 -0.2003 -4.0449 1.1530 13 6 0.2555 -5.3492 0.6045 14 8 -0.2273 -6.3430 1.1047 15 7 1.1157 -5.5426 -0.3544 16 6 2.0012 -4.7665 -1.0675 17 6 2.8667 -5.4827 -1.9127 18 6 3.7853 -4.8422 -2.7074 19 6 3.8664 -3.4605 -2.6794 20 17 5.0156 -2.6303 -3.6812 21 6 3.0278 -2.7506 -1.8497 22 6 2.0940 -3.3921 -1.0347 23 1 -0.4851 -0.8368 0.0743 24 1 1.8049 -3.4865 1.6071 25 1 0.6137 -2.1940 1.8117 26 1 -1.0165 -3.6668 0.5375 27 1 -0.5633 -4.1949 2.1698 28 1 1.1380 -6.4699 -0.6385 29 1 2.8078 -6.5608 -1.9376 30 1 4.4402 -5.4124 -3.3495 31 1 3.0945 -1.6729 -1.8286 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259919626.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:45 Heat of formation + Delta-G solvation = -22.414374 kcal Electronic energy + Delta-G solvation = -17854.930099 eV Core-core repulsion = 14933.608913 eV Total energy + Delta-G solvation = -2921.321186 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.84702 -38.73575 -36.34904 -35.70011 -34.64710 -32.18222 -30.93698 -29.34158 -26.98936 -24.18495 -23.73894 -22.28240 -20.41645 -19.26237 -17.65101 -17.15496 -16.72088 -15.82607 -15.19267 -14.66307 -14.24425 -13.90013 -13.71413 -13.40208 -13.35855 -12.90979 -12.55314 -12.18780 -11.68386 -11.38259 -11.12957 -11.03056 -10.90071 -10.71010 -10.37861 -10.19788 -10.07156 -9.82478 -9.66920 -8.92492 -8.48203 -8.32452 -7.56100 -6.54695 -4.29587 1.37129 1.67091 2.51062 2.90123 3.35104 3.36586 3.37700 3.54501 4.07212 4.38133 4.85470 5.05047 5.08228 5.17327 5.51518 5.56701 5.61680 5.66177 5.90486 6.08004 6.23010 6.24328 6.50886 6.52052 6.64003 6.75466 6.93702 7.08029 7.11698 7.42486 7.75149 7.95025 8.21127 8.23186 8.64117 9.40328 10.81668 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.012223 B = 0.010855 C = 0.005912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2290.270349 B = 2578.720700 C = 4734.620174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.027 3.973 3 Si 1.060 2.940 4 H -0.284 1.284 5 H -0.286 1.286 6 H -0.282 1.282 7 C -0.598 4.598 8 H 0.057 0.943 9 C 0.051 3.949 10 H 0.054 0.946 11 C -0.102 4.102 12 C -0.141 4.141 13 C 0.531 3.469 14 O -0.566 6.566 15 N -0.640 5.640 16 C 0.152 3.848 17 C -0.163 4.163 18 C -0.097 4.097 19 C -0.068 4.068 20 Cl -0.085 7.085 21 C -0.055 4.055 22 C -0.056 4.056 23 H 0.271 0.729 24 H 0.046 0.954 25 H 0.080 0.920 26 H 0.096 0.904 27 H 0.095 0.905 28 H 0.390 0.610 29 H 0.125 0.875 30 H 0.129 0.871 31 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.369 -6.998 -4.238 9.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.178 4.178 3 Si 0.887 3.113 4 H -0.210 1.210 5 H -0.213 1.213 6 H -0.207 1.207 7 C -0.636 4.636 8 H 0.076 0.924 9 C 0.033 3.967 10 H 0.072 0.928 11 C -0.141 4.141 12 C -0.181 4.181 13 C 0.322 3.678 14 O -0.446 6.446 15 N -0.277 5.277 16 C 0.057 3.943 17 C -0.184 4.184 18 C -0.116 4.116 19 C -0.095 4.095 20 Cl -0.057 7.057 21 C -0.074 4.074 22 C -0.059 4.059 23 H 0.083 0.917 24 H 0.065 0.935 25 H 0.098 0.902 26 H 0.115 0.885 27 H 0.114 0.886 28 H 0.223 0.777 29 H 0.143 0.857 30 H 0.146 0.854 31 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 4.927 -5.467 -3.956 8.355 hybrid contribution 0.411 -1.978 -0.162 2.027 sum 5.338 -7.445 -4.117 10.043 Atomic orbital electron populations 1.70831 1.06944 1.30877 1.44930 1.25812 0.96342 1.02533 0.93149 0.83663 0.75157 0.75533 0.76932 1.21011 1.21252 1.20686 1.21854 0.95204 0.90750 1.55750 0.92434 1.17171 0.95893 0.93260 0.90422 0.92812 1.20799 0.95394 0.96970 1.00901 1.21278 1.01543 0.92535 1.02710 1.19408 0.77529 0.92849 0.78060 1.90763 1.55975 1.40762 1.57119 1.42155 1.36971 1.13577 1.34975 1.17299 0.91684 0.91215 0.94148 1.20924 0.98364 0.99197 0.99913 1.20493 0.99012 0.92396 0.99740 1.20787 0.97135 0.92452 0.99147 1.98326 1.59578 1.79093 1.68677 1.21779 0.91322 1.02799 0.91537 1.19803 0.98023 0.89743 0.98354 0.91747 0.93516 0.90171 0.88542 0.88641 0.77664 0.85728 0.85353 0.82223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.35 13.53 55.43 0.75 -23.60 16 2 C 0.03 0.70 5.44 -17.82 -0.10 0.60 16 3 Si 1.06 22.96 29.91 -169.99 -5.08 17.88 16 4 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 5 H -0.29 -6.00 7.11 56.52 0.40 -5.60 16 6 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.60 -14.46 5.91 -34.44 -0.20 -14.67 16 8 H 0.06 1.41 7.17 -52.48 -0.38 1.03 16 9 C 0.05 1.11 1.74 -95.18 -0.17 0.94 16 10 H 0.05 1.28 6.35 -51.93 -0.33 0.95 16 11 C -0.10 -2.04 4.55 -29.30 -0.13 -2.18 16 12 C -0.14 -2.48 5.64 -29.79 -0.17 -2.65 16 13 C 0.53 9.49 7.51 -13.91 -0.10 9.39 16 14 O -0.57 -11.24 17.43 5.55 0.10 -11.15 16 15 N -0.64 -10.33 4.78 -11.86 -0.06 -10.39 16 16 C 0.15 2.57 6.64 -84.53 -0.56 2.00 16 17 C -0.16 -2.30 9.51 -39.03 -0.37 -2.67 16 18 C -0.10 -1.38 9.84 -39.84 -0.39 -1.77 16 19 C -0.07 -1.11 6.31 -39.71 -0.25 -1.36 16 20 Cl -0.09 -1.28 28.97 -51.86 -1.50 -2.79 16 21 C -0.06 -1.06 8.46 -39.29 -0.33 -1.39 16 22 C -0.06 -1.09 5.57 -104.91 -0.58 -1.68 16 23 H 0.27 7.18 6.70 -40.82 -0.27 6.90 16 24 H 0.05 0.93 8.05 -51.93 -0.42 0.51 16 25 H 0.08 1.72 7.85 -51.93 -0.41 1.31 16 26 H 0.10 1.66 7.98 -51.93 -0.41 1.24 16 27 H 0.10 1.56 8.08 -51.93 -0.42 1.14 16 28 H 0.39 5.42 7.46 -40.82 -0.30 5.11 16 29 H 0.12 1.36 7.70 -52.49 -0.40 0.96 16 30 H 0.13 1.48 8.06 -52.49 -0.42 1.05 16 31 H 0.16 3.34 6.06 -52.48 -0.32 3.02 16 LS Contribution 274.53 15.07 4.14 4.14 Total: -1.00 -27.13 274.53 -7.91 -35.04 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -2.88 Total: 6.30 kcal Atomic # 6 Polarization: -12.07 SS G_CDS: -3.36 Total: -15.44 kcal Atomic # 7 Polarization: -34.68 SS G_CDS: 0.69 Total: -33.98 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: 0.10 Total: -11.15 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -5.08 Total: 17.88 kcal Atomic # 17 Polarization: -1.28 SS G_CDS: -1.50 Total: -2.79 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -27.13 -7.91 -35.04 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259919626.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.622 kcal (2) G-P(sol) polarization free energy of solvation -27.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds