Wall clock time and date at job start Mon Mar 30 2020 06:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86805 * 120.00004 * 2 1 4 4 H 1.48498 * 109.46988 * 239.99878 * 3 2 1 5 5 H 1.48497 * 109.46960 * 120.00065 * 3 2 1 6 6 H 1.48495 * 109.46966 * 359.97438 * 3 2 1 7 7 C 1.37878 * 119.99920 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00093 * 187.95534 * 7 2 1 9 9 C 1.50693 * 120.00103 * 7.95560 * 7 2 1 10 10 H 1.08999 * 108.11048 * 24.42634 * 9 7 2 11 11 C 1.49698 * 108.22141 * 267.42297 * 9 7 2 12 12 C 1.51147 * 113.39319 * 160.65015 * 11 9 7 13 13 C 1.48658 * 111.74401 * 73.68452 * 12 11 9 14 14 O 1.21287 * 116.40518 * 144.26493 * 13 12 11 15 15 N 1.30262 * 127.18549 * 324.23779 * 13 12 11 16 16 C 1.37654 * 136.25237 * 9.76484 * 15 13 12 17 17 C 1.40590 * 114.84706 * 171.88935 * 16 15 13 18 18 C 1.37314 * 121.47420 * 178.60490 * 17 16 15 19 19 C 1.38441 * 119.54346 * 0.05053 * 18 17 16 20 20 Cl 1.73594 * 120.29551 * 180.27204 * 19 18 17 21 21 C 1.37678 * 119.40959 * 0.29387 * 19 18 17 22 22 C 1.37789 * 126.39610 * 351.03560 * 16 15 13 23 23 H 0.97006 * 120.00140 * 185.07086 * 1 2 3 24 24 H 1.08993 * 108.68098 * 281.88066 * 11 9 7 25 25 H 1.09000 * 108.67775 * 39.81425 * 11 9 7 26 26 H 1.08994 * 109.13324 * 313.06166 * 12 11 9 27 27 H 1.09001 * 108.94422 * 194.17746 * 12 11 9 28 28 H 0.97005 * 111.87704 * 189.78206 * 15 13 12 29 29 H 1.07994 * 119.26561 * 358.60979 * 17 16 15 30 30 H 1.08002 * 120.22987 * 180.02562 * 18 17 16 31 31 H 1.08006 * 119.25159 * 179.89587 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 3.1028 1.6964 1.2125 6 1 1.2841 2.7464 -0.0006 7 6 2.0045 -1.1941 0.0005 8 1 3.0767 -1.1985 0.1300 9 6 1.2619 -2.4929 -0.1795 10 1 0.3333 -2.2816 -0.7098 11 6 0.9160 -3.0262 1.1759 12 6 -0.2003 -4.0449 1.1530 13 6 0.2555 -5.3492 0.6045 14 8 -0.2273 -6.3430 1.1047 15 7 1.1157 -5.5426 -0.3544 16 6 2.0012 -4.7665 -1.0675 17 6 2.8667 -5.4827 -1.9127 18 6 3.7853 -4.8422 -2.7074 19 6 3.8664 -3.4605 -2.6794 20 17 5.0156 -2.6303 -3.6812 21 6 3.0278 -2.7506 -1.8497 22 6 2.0940 -3.3921 -1.0347 23 1 -0.4851 -0.8368 0.0743 24 1 1.8049 -3.4865 1.6071 25 1 0.6137 -2.1940 1.8117 26 1 -1.0165 -3.6668 0.5375 27 1 -0.5633 -4.1949 2.1698 28 1 1.1380 -6.4699 -0.6385 29 1 2.8078 -6.5608 -1.9376 30 1 4.4402 -5.4124 -3.3495 31 1 3.0945 -1.6729 -1.8286 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259919626.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:44 Heat of formation + Delta-G solvation = -37.252210 kcal Electronic energy + Delta-G solvation = -17855.573515 eV Core-core repulsion = 14933.608913 eV Total energy + Delta-G solvation = -2921.964603 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.25604 -40.12013 -37.70912 -37.24651 -36.00236 -33.97912 -32.35817 -30.68434 -28.58507 -25.89586 -25.22741 -23.65792 -22.01632 -20.63044 -19.02043 -18.95091 -18.18617 -17.18940 -16.59428 -16.14224 -15.67829 -15.62139 -15.30615 -14.84241 -14.70979 -14.42552 -13.96893 -13.50900 -13.17542 -12.94770 -12.69326 -12.61597 -12.44670 -12.20258 -11.99186 -11.82136 -11.41873 -11.34776 -11.18516 -10.75650 -10.35969 -9.72529 -8.91262 -8.54656 -6.28417 0.02812 0.38070 1.24638 1.49772 1.57325 1.61631 1.80255 2.04177 2.57168 2.74882 3.19703 3.46527 3.79069 3.90752 4.04948 4.09473 4.28528 4.35438 4.39628 4.69234 4.77410 4.94600 5.01737 5.11619 5.19185 5.28177 5.39615 5.53162 5.70102 5.87469 6.09262 6.22738 6.38255 6.67706 6.85761 7.46433 8.82039 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.012223 B = 0.010855 C = 0.005912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2290.270349 B = 2578.720700 C = 4734.620174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.018 4.018 3 Si 1.097 2.903 4 H -0.271 1.271 5 H -0.274 1.274 6 H -0.289 1.289 7 C -0.591 4.591 8 H 0.050 0.950 9 C 0.054 3.946 10 H 0.024 0.976 11 C -0.090 4.090 12 C -0.136 4.136 13 C 0.535 3.465 14 O -0.584 6.584 15 N -0.630 5.630 16 C 0.148 3.852 17 C -0.144 4.144 18 C -0.083 4.083 19 C -0.069 4.069 20 Cl -0.074 7.074 21 C -0.077 4.077 22 C -0.085 4.085 23 H 0.263 0.737 24 H 0.044 0.956 25 H 0.056 0.944 26 H 0.097 0.903 27 H 0.109 0.891 28 H 0.405 0.595 29 H 0.170 0.830 30 H 0.167 0.833 31 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.955 -9.079 -5.235 12.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.218 4.218 3 Si 0.920 3.080 4 H -0.196 1.196 5 H -0.199 1.199 6 H -0.215 1.215 7 C -0.629 4.629 8 H 0.068 0.932 9 C 0.036 3.964 10 H 0.042 0.958 11 C -0.128 4.128 12 C -0.176 4.176 13 C 0.325 3.675 14 O -0.467 6.467 15 N -0.268 5.268 16 C 0.052 3.948 17 C -0.164 4.164 18 C -0.102 4.102 19 C -0.096 4.096 20 Cl -0.045 7.045 21 C -0.097 4.097 22 C -0.089 4.089 23 H 0.073 0.927 24 H 0.063 0.937 25 H 0.075 0.925 26 H 0.116 0.884 27 H 0.127 0.873 28 H 0.241 0.759 29 H 0.187 0.813 30 H 0.185 0.815 31 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 6.543 -7.566 -4.970 11.169 hybrid contribution 0.010 -1.389 0.069 1.390 sum 6.553 -8.954 -4.901 12.130 Atomic orbital electron populations 1.70914 1.07821 1.30462 1.47822 1.26872 0.96422 1.05508 0.93014 0.83175 0.74427 0.72472 0.77909 1.19601 1.19899 1.21481 1.22078 0.94887 0.92048 1.53883 0.93193 1.17058 0.94829 0.93295 0.91264 0.95792 1.20537 0.96123 0.96769 0.99392 1.21199 1.00581 0.92047 1.03752 1.19242 0.77692 0.92246 0.78328 1.90760 1.56860 1.41067 1.57976 1.41974 1.36198 1.14353 1.34248 1.17381 0.92333 0.90320 0.94774 1.21347 0.96278 1.01212 0.97584 1.20937 0.98722 0.91324 0.99212 1.20888 0.96611 0.93562 0.98559 1.98331 1.58893 1.79211 1.68104 1.21489 0.93105 1.01631 0.93447 1.19574 0.98947 0.91015 0.99322 0.92670 0.93678 0.92482 0.88449 0.87274 0.75899 0.81312 0.81518 0.85135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.53 13.53 21.45 0.29 -52.24 16 2 C -0.02 -0.96 5.44 84.66 0.46 -0.50 16 3 Si 1.10 47.27 29.91 68.60 2.05 49.32 16 4 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 5 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 6 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 7 C -0.59 -29.62 5.91 25.60 0.15 -29.47 16 8 H 0.05 2.52 7.17 -2.91 -0.02 2.50 16 9 C 0.05 2.43 1.74 -13.75 -0.02 2.40 16 10 H 0.02 1.22 6.35 -2.39 -0.02 1.20 16 11 C -0.09 -3.68 4.55 28.93 0.13 -3.55 16 12 C -0.14 -4.80 5.64 28.62 0.16 -4.64 16 13 C 0.53 18.38 7.51 87.71 0.66 19.04 16 14 O -0.58 -22.22 17.43 -3.05 -0.05 -22.28 16 15 N -0.63 -18.88 4.78 -312.27 -1.49 -20.37 16 16 C 0.15 4.65 6.64 38.70 0.26 4.90 16 17 C -0.14 -3.40 9.51 22.63 0.22 -3.19 16 18 C -0.08 -1.99 9.84 22.10 0.22 -1.77 16 19 C -0.07 -2.11 6.31 22.19 0.14 -1.97 16 20 Cl -0.07 -2.08 28.97 -2.72 -0.08 -2.16 16 21 C -0.08 -2.95 8.46 22.46 0.19 -2.76 16 22 C -0.09 -3.32 5.57 -20.05 -0.11 -3.43 16 23 H 0.26 14.68 6.70 -92.70 -0.62 14.06 16 24 H 0.04 1.82 8.05 -2.39 -0.02 1.80 16 25 H 0.06 2.56 7.85 -2.39 -0.02 2.54 16 26 H 0.10 3.42 7.98 -2.39 -0.02 3.40 16 27 H 0.11 3.53 8.08 -2.39 -0.02 3.51 16 28 H 0.41 9.80 7.46 -92.70 -0.69 9.11 16 29 H 0.17 2.57 7.70 -2.91 -0.02 2.54 16 30 H 0.17 2.80 8.06 -2.91 -0.02 2.77 16 31 H 0.13 5.65 6.06 -2.91 -0.02 5.64 16 Total: -1.00 -60.08 274.53 3.80 -56.29 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: 0.63 Total: 16.37 kcal Atomic # 6 Polarization: -27.38 SS G_CDS: 2.45 Total: -24.93 kcal Atomic # 7 Polarization: -71.41 SS G_CDS: -1.20 Total: -72.61 kcal Atomic # 8 Polarization: -22.22 SS G_CDS: -0.05 Total: -22.28 kcal Atomic # 14 Polarization: 47.27 SS G_CDS: 2.05 Total: 49.32 kcal Atomic # 17 Polarization: -2.08 SS G_CDS: -0.08 Total: -2.16 kcal Total: -60.08 3.80 -56.29 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259919626.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.033 kcal (2) G-P(sol) polarization free energy of solvation -60.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds