Wall clock time and date at job start Mon Mar 30 2020 06:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99733 * 2 1 4 4 H 1.48496 * 109.46957 * 269.99247 * 3 2 1 5 5 H 1.48495 * 109.47538 * 29.99650 * 3 2 1 6 6 H 1.48503 * 109.46884 * 149.99830 * 3 2 1 7 7 C 1.37880 * 120.00109 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00099 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00121 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47068 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.46688 * 180.02562 * 10 9 7 12 12 S 1.75877 * 125.19767 * 270.26212 * 11 10 9 13 13 C 1.75856 * 91.04198 * 180.02562 * 12 11 10 14 14 C 1.33423 * 109.69068 * 359.70172 * 13 12 11 15 15 C 1.33748 * 125.19840 * 90.00655 * 11 10 9 16 16 N 1.40782 * 122.60713 * 359.97206 * 15 11 10 17 17 C 1.48656 * 111.00110 * 120.00356 * 16 15 11 18 18 C 1.54370 * 104.15747 * 157.91113 * 17 16 15 19 19 C 1.51834 * 105.31264 * 336.62332 * 18 17 16 20 20 O 1.20761 * 127.12804 * 179.69134 * 19 18 17 21 21 C 1.48549 * 111.00118 * 234.86883 * 16 15 11 22 22 H 0.97001 * 120.00107 * 0.02562 * 1 2 3 23 23 H 1.09005 * 109.47113 * 60.00248 * 9 7 2 24 24 H 1.09007 * 109.46923 * 300.00494 * 9 7 2 25 25 H 1.09005 * 109.47006 * 60.00115 * 10 9 7 26 26 H 1.08990 * 109.47495 * 299.99952 * 10 9 7 27 27 H 1.08002 * 125.15690 * 179.97438 * 13 12 11 28 28 H 1.07994 * 122.55957 * 180.20087 * 14 13 12 29 29 H 1.09002 * 110.49193 * 276.58141 * 17 16 15 30 30 H 1.09000 * 110.49257 * 39.24132 * 17 16 15 31 31 H 1.09007 * 110.27225 * 95.58171 * 18 17 16 32 32 H 1.09001 * 110.27558 * 217.65751 * 18 17 16 33 33 H 1.08996 * 110.35738 * 320.36604 * 21 16 15 34 34 H 1.09004 * 110.35391 * 82.65814 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0011 10 6 4.0215 -2.6365 0.0010 11 6 5.5285 -2.6364 0.0022 12 16 6.5434 -2.6293 -1.4342 13 6 7.9979 -2.6348 -0.4457 14 6 7.6636 -2.6349 0.8460 15 6 6.2986 -2.6369 1.0958 16 7 5.7657 -2.6370 2.3988 17 6 6.2060 -3.8392 3.1544 18 6 6.0491 -3.4327 4.6353 19 6 6.1083 -1.9156 4.6432 20 8 6.0199 -1.1876 5.6027 21 6 6.3032 -1.5032 3.1939 22 1 -0.4850 0.8400 -0.0004 23 1 3.8746 -0.6801 0.8912 24 1 3.8752 -0.6803 -0.8889 25 1 3.6585 -3.1502 -0.8893 26 1 3.6579 -3.1506 0.8906 27 1 9.0086 -2.6336 -0.8264 28 1 8.3991 -2.6348 1.6367 29 1 5.5666 -4.6909 2.9226 30 1 7.2474 -4.0704 2.9304 31 1 5.0889 -3.7753 5.0213 32 1 6.8647 -3.8458 5.2289 33 1 7.3622 -1.3584 2.9800 34 1 5.7444 -0.5919 2.9805 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259939702.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:12 Heat of formation + Delta-G solvation = 4.807615 kcal Electronic energy + Delta-G solvation = -17693.442391 eV Core-core repulsion = 14911.178440 eV Total energy + Delta-G solvation = -2782.263951 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.37587 -38.59210 -35.88495 -33.96033 -31.89221 -30.56800 -28.68762 -27.65170 -24.88011 -22.81717 -22.30323 -20.57828 -19.83635 -18.61272 -17.25240 -16.73108 -16.18393 -16.02130 -14.90526 -14.67205 -14.41739 -14.19167 -13.70002 -13.56935 -13.25224 -12.89377 -12.72981 -12.31582 -12.15074 -12.10214 -11.85012 -11.49907 -11.32146 -10.94930 -10.67918 -10.21458 -9.85139 -9.73162 -9.66778 -9.18464 -8.70508 -8.50877 -8.31454 -8.15494 -6.01686 -3.99345 1.18827 1.74865 1.81244 2.14807 2.67760 3.33368 3.41155 3.45589 3.89783 4.06296 4.48300 4.50023 4.74052 4.90813 4.99801 5.18474 5.23203 5.33172 5.44538 5.54817 5.69914 5.73033 5.80143 5.94174 6.09942 6.23610 6.44611 6.50992 6.66093 6.85709 7.24530 7.30435 7.34190 7.46636 7.80689 8.55232 9.02871 9.60966 11.11697 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.014125 B = 0.007572 C = 0.005666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.798445 B = 3697.100984 C = 4940.988709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.069 3.931 3 Si 0.876 3.124 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.518 4.518 8 H 0.073 0.927 9 C 0.000 4.000 10 C -0.035 4.035 11 C -0.106 4.106 12 S 0.108 5.892 13 C -0.227 4.227 14 C -0.152 4.152 15 C 0.017 3.983 16 N -0.431 5.431 17 C 0.037 3.963 18 C -0.184 4.184 19 C 0.378 3.622 20 O -0.440 6.440 21 C -0.024 4.024 22 H 0.263 0.737 23 H 0.021 0.979 24 H 0.008 0.992 25 H 0.063 0.937 26 H 0.087 0.913 27 H 0.159 0.841 28 H 0.132 0.868 29 H 0.095 0.905 30 H 0.055 0.945 31 H 0.110 0.890 32 H 0.102 0.898 33 H 0.084 0.916 34 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.800 -8.026 3.180 19.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.132 4.132 3 Si 0.703 3.297 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.556 4.556 8 H 0.091 0.909 9 C -0.038 4.038 10 C -0.074 4.074 11 C -0.225 4.225 12 S 0.371 5.629 13 C -0.362 4.362 14 C -0.185 4.185 15 C -0.087 4.087 16 N -0.154 5.154 17 C -0.090 4.090 18 C -0.222 4.222 19 C 0.252 3.748 20 O -0.311 6.311 21 C -0.151 4.151 22 H 0.072 0.928 23 H 0.040 0.960 24 H 0.026 0.974 25 H 0.082 0.918 26 H 0.105 0.895 27 H 0.177 0.823 28 H 0.149 0.851 29 H 0.113 0.887 30 H 0.073 0.927 31 H 0.128 0.872 32 H 0.120 0.880 33 H 0.101 0.899 34 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 16.752 -7.490 2.084 18.469 hybrid contribution 1.663 0.878 1.371 2.327 sum 18.415 -6.612 3.455 19.869 Atomic orbital electron populations 1.69907 1.06248 1.26833 1.51237 1.24975 0.94675 0.99022 0.94577 0.86833 0.80519 0.83844 0.78475 1.20332 1.21376 1.18958 1.21088 0.89210 0.94517 1.50739 0.90887 1.19518 0.96941 0.90866 0.96468 1.20212 0.83688 1.01014 1.02494 1.24907 1.01583 1.02421 0.93558 1.84387 0.96080 1.72866 1.09579 1.25276 1.01977 1.12153 0.96827 1.20345 0.96323 1.05000 0.96832 1.17678 0.90147 1.10127 0.90739 1.63409 1.52074 1.01435 0.98442 1.23191 1.00096 0.94692 0.91004 1.22894 1.05306 0.95820 0.98202 1.24806 0.68877 0.91491 0.89630 1.90440 1.37367 1.62027 1.41313 1.23670 1.01036 0.97573 0.92869 0.92762 0.96021 0.97361 0.91811 0.89502 0.82311 0.85076 0.88662 0.92710 0.87198 0.88011 0.89869 0.86787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.02 13.96 55.43 0.77 -27.25 16 2 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 3 Si 0.88 22.12 27.47 -169.99 -4.67 17.45 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.26 -6.48 6.54 56.52 0.37 -6.11 16 7 C -0.52 -14.72 9.66 -34.44 -0.33 -15.05 16 8 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 9 C 0.00 0.00 4.02 -27.89 -0.11 -0.11 16 10 C -0.03 -0.68 5.47 -27.89 -0.15 -0.83 16 11 C -0.11 -1.77 5.77 -35.88 -0.21 -1.98 16 12 S 0.11 1.52 23.32 -107.50 -2.51 -0.99 16 13 C -0.23 -2.69 11.22 29.05 0.33 -2.36 16 14 C -0.15 -1.88 8.29 -41.07 -0.34 -2.22 16 15 C 0.02 0.25 4.80 -85.12 -0.41 -0.15 16 16 N -0.43 -6.16 5.03 -169.33 -0.85 -7.01 16 17 C 0.04 0.39 6.45 -2.13 -0.01 0.38 16 18 C -0.18 -1.80 6.89 -26.61 -0.18 -1.98 16 19 C 0.38 4.95 8.08 -27.86 -0.23 4.72 16 20 O -0.44 -7.13 17.99 6.00 0.11 -7.02 16 21 C -0.02 -0.31 6.28 -3.45 -0.02 -0.34 16 22 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 23 H 0.02 0.53 7.20 -51.93 -0.37 0.16 16 24 H 0.01 0.20 7.57 -51.92 -0.39 -0.20 16 25 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 26 H 0.09 1.74 7.91 -51.93 -0.41 1.33 16 27 H 0.16 1.44 8.06 -52.49 -0.42 1.02 16 28 H 0.13 1.32 7.27 -52.49 -0.38 0.94 16 29 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 30 H 0.05 0.50 7.07 -51.93 -0.37 0.13 16 31 H 0.11 1.05 8.14 -51.92 -0.42 0.63 16 32 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.08 0.95 6.72 -51.93 -0.35 0.60 16 34 H 0.11 1.75 8.14 -51.93 -0.42 1.33 16 LS Contribution 299.73 15.07 4.52 4.52 Total: -1.00 -32.20 299.73 -8.80 -41.00 By element: Atomic # 1 Polarization: 1.72 SS G_CDS: -4.40 Total: -2.68 kcal Atomic # 6 Polarization: -16.24 SS G_CDS: -1.77 Total: -18.01 kcal Atomic # 7 Polarization: -34.18 SS G_CDS: -0.08 Total: -34.26 kcal Atomic # 8 Polarization: -7.13 SS G_CDS: 0.11 Total: -7.02 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.67 Total: 17.45 kcal Atomic # 16 Polarization: 1.52 SS G_CDS: -2.51 Total: -0.99 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -32.20 -8.80 -41.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259939702.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.805 kcal (2) G-P(sol) polarization free energy of solvation -32.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds