Wall clock time and date at job start Mon Mar 30 2020 06:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86801 * 120.00104 * 2 1 4 4 H 1.48490 * 109.47451 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47028 * 299.99916 * 3 2 1 6 6 H 1.48501 * 109.47397 * 59.99581 * 3 2 1 7 7 C 1.37871 * 119.99924 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00047 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00218 * 0.27729 * 7 2 1 10 10 H 1.08995 * 109.46731 * 299.72455 * 9 7 2 11 11 N 1.46906 * 109.46859 * 59.72163 * 9 7 2 12 12 C 1.50696 * 109.47137 * 179.72214 * 9 7 2 13 13 C 1.38288 * 119.97453 * 279.72680 * 12 9 7 14 14 C 1.38248 * 120.11279 * 179.72874 * 13 12 9 15 15 C 1.38170 * 120.05125 * 0.54551 * 14 13 12 16 16 C 1.38713 * 119.94635 * 359.72390 * 15 14 13 17 17 O 1.35893 * 120.05335 * 179.97438 * 16 15 14 18 18 C 1.42904 * 117.00436 * 5.96182 * 17 16 15 19 19 C 1.53041 * 113.14980 * 257.93466 * 18 17 16 20 20 S 1.81427 * 89.88804 * 211.84891 * 19 18 17 21 21 C 1.53042 * 113.15458 * 157.56014 * 18 17 16 22 22 C 1.38130 * 119.97031 * 100.00194 * 12 9 7 23 23 H 0.96998 * 119.99556 * 359.97438 * 1 2 3 24 24 H 1.00895 * 110.99984 * 60.00331 * 11 9 7 25 25 H 1.00900 * 110.99043 * 183.95398 * 11 9 7 26 26 H 1.07995 * 119.94153 * 359.97429 * 13 12 9 27 27 H 1.07992 * 119.97353 * 180.24839 * 14 13 12 28 28 H 1.08000 * 120.02172 * 179.70936 * 15 14 13 29 29 H 1.09006 * 112.49181 * 27.77344 * 18 17 16 30 30 H 1.08997 * 113.15209 * 327.10729 * 19 18 17 31 31 H 1.09003 * 113.15010 * 96.59603 * 19 18 17 32 32 H 1.09003 * 113.14580 * 263.41188 * 21 18 17 33 33 H 1.09004 * 113.14849 * 32.84435 * 21 18 17 34 34 H 1.07999 * 120.02698 * 0.02562 * 22 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8905 2.3965 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 -0.0052 10 1 0.6244 -2.5607 0.8845 11 7 0.4065 -2.5716 -1.2050 12 6 2.2304 -3.6445 -0.0102 13 6 2.8332 -4.0329 -1.1927 14 6 3.7363 -5.0797 -1.1996 15 6 4.0302 -5.7477 -0.0264 16 6 3.4226 -5.3637 1.1600 17 8 3.7097 -6.0195 2.3150 18 6 4.7414 -7.0069 2.2613 19 6 4.2022 -8.4384 2.2123 20 16 5.6591 -9.0147 3.1270 21 6 5.3707 -7.2946 3.6264 22 6 2.5208 -4.3092 1.1653 23 1 -0.4849 0.8401 0.0004 24 1 0.9645 -2.5166 -2.0438 25 1 -0.1574 -3.4084 -1.2001 26 1 2.6011 -3.5151 -2.1115 27 1 4.2087 -5.3785 -2.1236 28 1 4.7322 -6.5684 -0.0332 29 1 5.4779 -6.7987 1.4851 30 1 3.2714 -8.5649 2.7651 31 1 4.1449 -8.8403 1.2006 32 1 6.2920 -6.7383 3.7993 33 1 4.6653 -7.1999 4.4520 34 1 2.0461 -4.0086 2.0876 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259943673.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:11 Heat of formation + Delta-G solvation = 17.671136 kcal Electronic energy + Delta-G solvation = -17356.527526 eV Core-core repulsion = 14574.821380 eV Total energy + Delta-G solvation = -2781.706147 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.10797 -37.96264 -35.01567 -34.05059 -31.61399 -30.07384 -28.74491 -26.66986 -26.02642 -23.72090 -22.10717 -21.89375 -19.87441 -17.92253 -16.77960 -16.44924 -15.79816 -15.60092 -15.40879 -14.80066 -14.44356 -14.23113 -13.58796 -13.48697 -13.29159 -12.90218 -12.74939 -12.32376 -12.01769 -11.59536 -11.35912 -11.16489 -10.91503 -10.84409 -10.77833 -10.57018 -10.44412 -9.81391 -9.27235 -8.46008 -8.20318 -8.17196 -7.81552 -7.11116 -5.89833 -4.04826 1.35477 1.47462 1.87014 1.90791 3.21365 3.32080 3.40490 3.44309 3.94459 4.28760 4.38957 4.50484 4.54417 4.97378 5.00779 5.14604 5.21009 5.29190 5.35084 5.40463 5.74011 5.86103 6.00103 6.18951 6.27906 6.52367 6.68630 6.90213 7.04746 7.21770 7.55049 7.69703 7.89077 8.15424 8.59988 8.97682 9.12109 9.63952 11.14573 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.034107 B = 0.004052 C = 0.003880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.743344 B = 6908.249049 C = 7214.274244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.084 3.916 3 Si 0.885 3.115 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.530 4.530 8 H 0.055 0.945 9 C 0.252 3.748 10 H 0.049 0.951 11 N -0.808 5.808 12 C -0.033 4.033 13 C -0.153 4.153 14 C -0.086 4.086 15 C -0.232 4.232 16 C 0.116 3.884 17 O -0.298 6.298 18 C 0.083 3.917 19 C -0.106 4.106 20 S -0.270 6.270 21 C -0.082 4.082 22 C -0.147 4.147 23 H 0.255 0.745 24 H 0.318 0.682 25 H 0.299 0.701 26 H 0.120 0.880 27 H 0.115 0.885 28 H 0.117 0.883 29 H 0.119 0.881 30 H 0.116 0.884 31 H 0.102 0.898 32 H 0.105 0.895 33 H 0.117 0.883 34 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.337 -14.634 2.586 17.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.123 4.123 3 Si 0.712 3.288 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.569 4.569 8 H 0.073 0.927 9 C 0.142 3.858 10 H 0.067 0.933 11 N -0.334 5.334 12 C -0.036 4.036 13 C -0.171 4.171 14 C -0.104 4.104 15 C -0.251 4.251 16 C 0.072 3.928 17 O -0.212 6.212 18 C 0.024 3.976 19 C -0.255 4.255 20 S -0.044 6.044 21 C -0.230 4.230 22 C -0.166 4.166 23 H 0.065 0.935 24 H 0.131 0.869 25 H 0.109 0.891 26 H 0.138 0.862 27 H 0.133 0.867 28 H 0.135 0.865 29 H 0.137 0.863 30 H 0.134 0.866 31 H 0.120 0.880 32 H 0.124 0.876 33 H 0.135 0.865 34 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 8.590 -14.962 3.259 17.558 hybrid contribution 0.571 0.733 -0.509 1.060 sum 9.161 -14.229 2.750 17.145 Atomic orbital electron populations 1.70117 1.05669 1.25648 1.46627 1.24943 0.94651 0.98560 0.94145 0.86682 0.80272 0.84272 0.77545 1.19873 1.21027 1.21044 1.20837 0.92279 0.89271 1.54497 0.92714 1.18274 0.87558 0.88792 0.91200 0.93309 1.59217 1.27916 1.41971 1.04269 1.21690 0.95790 0.94987 0.91122 1.20951 0.99106 0.98225 0.98838 1.20825 0.97185 0.95542 0.96832 1.20940 1.06218 1.04873 0.93032 1.19006 0.96465 0.93026 0.84330 1.86165 1.52687 1.50310 1.32026 1.23934 0.90117 0.85990 0.97589 1.25100 0.99355 0.96505 1.04536 1.88999 1.37459 1.19393 1.58591 1.24611 1.04610 0.93028 1.00784 1.20431 1.00855 0.95627 0.99706 0.93458 0.86916 0.89092 0.86232 0.86702 0.86531 0.86328 0.86580 0.87980 0.87595 0.86455 0.85561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.21 12.76 55.43 0.71 -23.50 16 2 C 0.08 2.30 5.39 -17.82 -0.10 2.20 16 3 Si 0.88 21.05 29.54 -169.99 -5.02 16.03 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.53 -14.24 8.71 -34.44 -0.30 -14.54 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.25 6.04 2.85 -70.01 -0.20 5.84 16 10 H 0.05 1.29 8.00 -51.93 -0.42 0.87 16 11 N -0.81 -18.33 8.35 -6.65 -0.06 -18.38 16 12 C -0.03 -0.68 4.88 -104.65 -0.51 -1.19 16 13 C -0.15 -2.77 9.29 -39.56 -0.37 -3.13 16 14 C -0.09 -1.32 10.04 -39.60 -0.40 -1.72 16 15 C -0.23 -3.41 9.00 -39.43 -0.35 -3.77 16 16 C 0.12 1.89 6.68 -39.22 -0.26 1.63 16 17 O -0.30 -4.24 10.10 -19.40 -0.20 -4.44 16 18 C 0.08 0.89 3.26 -26.69 -0.09 0.80 16 19 C -0.11 -1.02 7.79 37.18 0.29 -0.73 16 20 S -0.27 -2.76 24.79 -107.50 -2.67 -5.42 16 21 C -0.08 -0.76 7.79 37.18 0.29 -0.47 16 22 C -0.15 -2.79 9.61 -39.43 -0.38 -3.17 16 23 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 24 H 0.32 6.83 7.33 -39.29 -0.29 6.54 16 25 H 0.30 6.06 9.06 -39.29 -0.36 5.70 16 26 H 0.12 2.11 6.65 -52.49 -0.35 1.77 16 27 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 28 H 0.12 1.38 5.97 -52.49 -0.31 1.07 16 29 H 0.12 1.20 6.08 -51.93 -0.32 0.88 16 30 H 0.12 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.12 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.13 2.39 8.04 -52.49 -0.42 1.97 16 LS Contribution 299.96 15.07 4.52 4.52 Total: -1.00 -29.26 299.96 -9.20 -38.46 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -4.11 Total: 10.98 kcal Atomic # 6 Polarization: -15.87 SS G_CDS: -2.38 Total: -18.24 kcal Atomic # 7 Polarization: -42.53 SS G_CDS: 0.65 Total: -41.88 kcal Atomic # 8 Polarization: -4.24 SS G_CDS: -0.20 Total: -4.44 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: -2.76 SS G_CDS: -2.67 Total: -5.42 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.26 -9.20 -38.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259943673.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.126 kcal (2) G-P(sol) polarization free energy of solvation -29.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds