Wall clock time and date at job start Mon Mar 30 2020 06:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86801 * 120.00104 * 2 1 4 4 H 1.48490 * 109.47451 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47028 * 299.99916 * 3 2 1 6 6 H 1.48501 * 109.47397 * 59.99581 * 3 2 1 7 7 C 1.37871 * 119.99924 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00047 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00218 * 0.27729 * 7 2 1 10 10 H 1.08995 * 109.46731 * 299.72455 * 9 7 2 11 11 N 1.46906 * 109.46859 * 59.72163 * 9 7 2 12 12 C 1.50696 * 109.47137 * 179.72214 * 9 7 2 13 13 C 1.38288 * 119.97453 * 279.72680 * 12 9 7 14 14 C 1.38248 * 120.11279 * 179.72874 * 13 12 9 15 15 C 1.38170 * 120.05125 * 0.54551 * 14 13 12 16 16 C 1.38713 * 119.94635 * 359.72390 * 15 14 13 17 17 O 1.35893 * 120.05335 * 179.97438 * 16 15 14 18 18 C 1.42904 * 117.00436 * 5.96182 * 17 16 15 19 19 C 1.53041 * 113.14980 * 257.93466 * 18 17 16 20 20 S 1.81427 * 89.88804 * 211.84891 * 19 18 17 21 21 C 1.53042 * 113.15458 * 157.56014 * 18 17 16 22 22 C 1.38130 * 119.97031 * 100.00194 * 12 9 7 23 23 H 0.96998 * 119.99556 * 359.97438 * 1 2 3 24 24 H 1.00895 * 110.99984 * 60.00331 * 11 9 7 25 25 H 1.00900 * 110.99043 * 183.95398 * 11 9 7 26 26 H 1.07995 * 119.94153 * 359.97429 * 13 12 9 27 27 H 1.07992 * 119.97353 * 180.24839 * 14 13 12 28 28 H 1.08000 * 120.02172 * 179.70936 * 15 14 13 29 29 H 1.09006 * 112.49181 * 27.77344 * 18 17 16 30 30 H 1.08997 * 113.15209 * 327.10729 * 19 18 17 31 31 H 1.09003 * 113.15010 * 96.59603 * 19 18 17 32 32 H 1.09003 * 113.14580 * 263.41188 * 21 18 17 33 33 H 1.09004 * 113.14849 * 32.84435 * 21 18 17 34 34 H 1.07999 * 120.02698 * 0.02562 * 22 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8905 2.3965 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 -0.0052 10 1 0.6244 -2.5607 0.8845 11 7 0.4065 -2.5716 -1.2050 12 6 2.2304 -3.6445 -0.0102 13 6 2.8332 -4.0329 -1.1927 14 6 3.7363 -5.0797 -1.1996 15 6 4.0302 -5.7477 -0.0264 16 6 3.4226 -5.3637 1.1600 17 8 3.7097 -6.0195 2.3150 18 6 4.7414 -7.0069 2.2613 19 6 4.2022 -8.4384 2.2123 20 16 5.6591 -9.0147 3.1270 21 6 5.3707 -7.2946 3.6264 22 6 2.5208 -4.3092 1.1653 23 1 -0.4849 0.8401 0.0004 24 1 0.9645 -2.5166 -2.0438 25 1 -0.1574 -3.4084 -1.2001 26 1 2.6011 -3.5151 -2.1115 27 1 4.2087 -5.3785 -2.1236 28 1 4.7322 -6.5684 -0.0332 29 1 5.4779 -6.7987 1.4851 30 1 3.2714 -8.5649 2.7651 31 1 4.1449 -8.8403 1.2006 32 1 6.2920 -6.7383 3.7993 33 1 4.6653 -7.1999 4.4520 34 1 2.0461 -4.0086 2.0876 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259943673.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:11 Heat of formation + Delta-G solvation = -0.537245 kcal Electronic energy + Delta-G solvation = -17357.317101 eV Core-core repulsion = 14574.821380 eV Total energy + Delta-G solvation = -2782.495721 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.27392 -39.23814 -36.35413 -35.39070 -33.55829 -31.48356 -30.12897 -28.00125 -27.40167 -25.12085 -23.41155 -23.27190 -21.15076 -19.15568 -18.43981 -17.66518 -16.93259 -16.83393 -16.61928 -16.38980 -15.95196 -15.61039 -14.93275 -14.84202 -14.31908 -14.27743 -14.00931 -13.67911 -13.33684 -13.07395 -12.82926 -12.72310 -12.40903 -12.28988 -12.00242 -11.78910 -11.70373 -11.42670 -11.19892 -10.55144 -9.64648 -9.15438 -8.98191 -8.84158 -7.97719 -6.19143 0.50885 0.52824 0.67061 0.69700 1.42987 1.45392 1.55846 2.18671 2.47363 2.92141 3.19086 3.26543 3.59121 3.71904 3.96584 4.08594 4.25688 4.27890 4.36150 4.44954 4.47958 4.57751 4.59496 4.75581 4.81959 5.15004 5.32393 5.39173 5.57094 5.75776 5.87830 5.94723 6.18879 6.48325 6.66404 7.11793 7.27564 7.53282 9.06002 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.034107 B = 0.004052 C = 0.003880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.743344 B = 6908.249049 C = 7214.274244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.035 3.965 3 Si 0.948 3.052 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.541 4.541 8 H 0.045 0.955 9 C 0.256 3.744 10 H 0.010 0.990 11 N -0.818 5.818 12 C -0.055 4.055 13 C -0.166 4.166 14 C -0.075 4.075 15 C -0.218 4.218 16 C 0.124 3.876 17 O -0.307 6.307 18 C 0.076 3.924 19 C -0.099 4.099 20 S -0.286 6.286 21 C -0.076 4.076 22 C -0.172 4.172 23 H 0.255 0.745 24 H 0.325 0.675 25 H 0.312 0.688 26 H 0.118 0.882 27 H 0.153 0.847 28 H 0.155 0.845 29 H 0.132 0.868 30 H 0.117 0.883 31 H 0.115 0.885 32 H 0.119 0.881 33 H 0.121 0.879 34 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.432 -16.013 1.928 19.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.168 4.168 3 Si 0.774 3.226 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.579 4.579 8 H 0.064 0.936 9 C 0.146 3.854 10 H 0.028 0.972 11 N -0.345 5.345 12 C -0.058 4.058 13 C -0.184 4.184 14 C -0.093 4.093 15 C -0.237 4.237 16 C 0.079 3.921 17 O -0.222 6.222 18 C 0.017 3.983 19 C -0.248 4.248 20 S -0.061 6.061 21 C -0.224 4.224 22 C -0.192 4.192 23 H 0.065 0.935 24 H 0.138 0.862 25 H 0.123 0.877 26 H 0.136 0.864 27 H 0.170 0.830 28 H 0.173 0.827 29 H 0.149 0.851 30 H 0.135 0.865 31 H 0.134 0.866 32 H 0.137 0.863 33 H 0.139 0.861 34 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 10.701 -16.360 2.610 19.722 hybrid contribution -0.023 1.015 -0.239 1.043 sum 10.678 -15.345 2.370 18.844 Atomic orbital electron populations 1.70238 1.07023 1.26329 1.47982 1.25671 0.95424 1.01765 0.93965 0.85687 0.79038 0.80311 0.77545 1.19515 1.20592 1.20739 1.21119 0.92019 0.90935 1.53858 0.93631 1.17892 0.87803 0.89643 0.90075 0.97228 1.59008 1.28326 1.43025 1.04125 1.21232 0.96697 0.95011 0.92864 1.20997 1.00127 0.99564 0.97730 1.21204 0.95596 0.93837 0.98648 1.21343 1.05527 1.05001 0.91805 1.18918 0.95434 0.92077 0.85695 1.86161 1.53856 1.50895 1.31265 1.24272 0.89599 0.85552 0.98886 1.25066 0.98985 0.95429 1.05279 1.89135 1.37811 1.20083 1.59059 1.24616 1.05209 0.92401 1.00193 1.20346 1.02594 0.97477 0.98739 0.93547 0.86157 0.87724 0.86360 0.82962 0.82726 0.85067 0.86482 0.86618 0.86282 0.86114 0.87233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -51.63 12.76 21.45 0.27 -51.35 16 2 C 0.04 1.97 5.39 84.65 0.46 2.43 16 3 Si 0.95 43.83 29.54 68.60 2.03 45.86 16 4 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 5 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 6 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 7 C -0.54 -29.85 8.71 25.60 0.22 -29.62 16 8 H 0.05 2.53 7.74 -2.91 -0.02 2.51 16 9 C 0.26 12.81 2.85 43.42 0.12 12.93 16 10 H 0.01 0.55 8.00 -2.39 -0.02 0.53 16 11 N -0.82 -38.17 8.35 -174.95 -1.46 -39.63 16 12 C -0.06 -2.30 4.88 -19.88 -0.10 -2.40 16 13 C -0.17 -5.84 9.29 22.28 0.21 -5.63 16 14 C -0.08 -2.06 10.04 22.26 0.22 -1.84 16 15 C -0.22 -5.62 9.00 22.37 0.20 -5.42 16 16 C 0.12 3.83 6.68 22.51 0.15 3.98 16 17 O -0.31 -8.18 10.10 -92.34 -0.93 -9.12 16 18 C 0.08 1.39 3.26 30.62 0.10 1.49 16 19 C -0.10 -1.61 7.79 72.00 0.56 -1.05 16 20 S -0.29 -5.14 24.79 -56.49 -1.40 -6.54 16 21 C -0.08 -1.22 7.79 72.00 0.56 -0.66 16 22 C -0.17 -6.66 9.61 22.37 0.21 -6.44 16 23 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 24 H 0.33 14.20 7.33 -89.70 -0.66 13.54 16 25 H 0.31 13.00 9.06 -89.69 -0.81 12.19 16 26 H 0.12 4.11 6.65 -2.91 -0.02 4.09 16 27 H 0.15 3.06 8.06 -2.91 -0.02 3.04 16 28 H 0.16 2.80 5.97 -2.91 -0.02 2.79 16 29 H 0.13 2.09 6.08 -2.38 -0.01 2.08 16 30 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.12 1.88 8.14 -2.38 -0.02 1.86 16 34 H 0.11 4.44 8.04 -2.91 -0.02 4.42 16 Total: -1.00 -64.10 299.96 1.09 -63.01 By element: Atomic # 1 Polarization: 30.35 SS G_CDS: -0.34 Total: 30.02 kcal Atomic # 6 Polarization: -35.16 SS G_CDS: 2.92 Total: -32.24 kcal Atomic # 7 Polarization: -89.80 SS G_CDS: -1.19 Total: -90.98 kcal Atomic # 8 Polarization: -8.18 SS G_CDS: -0.93 Total: -9.12 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Atomic # 16 Polarization: -5.14 SS G_CDS: -1.40 Total: -6.54 kcal Total: -64.10 1.09 -63.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259943673.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.470 kcal (2) G-P(sol) polarization free energy of solvation -64.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds