Wall clock time and date at job start Mon Mar 30 2020 06:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00363 * 2 1 4 4 H 1.48506 * 109.46978 * 0.02562 * 3 2 1 5 5 H 1.48504 * 109.47270 * 119.99879 * 3 2 1 6 6 H 1.48500 * 109.47402 * 240.00340 * 3 2 1 7 7 C 1.37880 * 120.00087 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00372 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99762 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.47369 * 60.00004 * 9 7 2 11 11 N 1.46902 * 109.47090 * 299.99790 * 9 7 2 12 12 C 1.50701 * 109.47322 * 180.02562 * 9 7 2 13 13 C 1.38288 * 119.97522 * 79.99238 * 12 9 7 14 14 C 1.38242 * 120.11214 * 180.02562 * 13 12 9 15 15 C 1.38163 * 120.05719 * 359.96040 * 14 13 12 16 16 C 1.38711 * 119.94583 * 0.02562 * 15 14 13 17 17 O 1.35896 * 120.05954 * 180.02562 * 16 15 14 18 18 C 1.42908 * 116.99778 * 5.93115 * 17 16 15 19 19 C 1.53042 * 113.15084 * 257.94378 * 18 17 16 20 20 S 1.81429 * 89.88798 * 211.85340 * 19 18 17 21 21 C 1.53046 * 113.14862 * 157.56761 * 18 17 16 22 22 C 1.38124 * 119.97139 * 259.72799 * 12 9 7 23 23 H 0.97004 * 119.99766 * 180.02562 * 1 2 3 24 24 H 1.00900 * 110.99764 * 176.04313 * 11 9 7 25 25 H 1.00891 * 111.00284 * 299.99987 * 11 9 7 26 26 H 1.08001 * 119.94319 * 359.97438 * 13 12 9 27 27 H 1.08006 * 119.97018 * 179.97438 * 14 13 12 28 28 H 1.08001 * 120.02674 * 180.02562 * 15 14 13 29 29 H 1.09002 * 112.49288 * 27.78448 * 18 17 16 30 30 H 1.08993 * 113.15065 * 327.11209 * 19 18 17 31 31 H 1.08994 * 113.14570 * 96.59690 * 19 18 17 32 32 H 1.08996 * 113.14727 * 263.40597 * 21 18 17 33 33 H 1.08993 * 113.14851 * 32.85445 * 21 18 17 34 34 H 1.08000 * 120.02747 * 359.97438 * 22 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.6240 -2.5567 -0.8903 11 7 0.4069 -2.5772 1.1993 12 6 2.2302 -3.6447 -0.0005 13 6 2.8374 -4.0346 1.1791 14 6 3.7365 -5.0847 1.1823 15 6 4.0301 -5.7479 0.0063 16 6 3.4222 -5.3589 -1.1783 17 8 3.7089 -6.0100 -2.3362 18 6 4.5431 -7.1664 -2.2408 19 6 5.9907 -6.9002 -2.6600 20 16 6.1237 -8.6039 -3.2696 21 6 4.3806 -8.1246 -3.4231 22 6 2.5164 -4.3078 -1.1779 23 1 -0.4850 -0.8401 0.0004 24 1 -0.1571 -3.4138 1.1907 25 1 0.9652 -2.5260 2.0381 26 1 2.6094 -3.5173 2.0994 27 1 4.2097 -5.3870 2.1049 28 1 4.7323 -6.5685 0.0095 29 1 4.4604 -7.6616 -1.2733 30 1 6.0778 -6.1545 -3.4501 31 1 6.6499 -6.6942 -1.8169 32 1 3.6913 -8.9439 -3.2190 33 1 4.1567 -7.6149 -4.3601 34 1 2.0384 -4.0060 -2.0981 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259943677.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:12 Heat of formation + Delta-G solvation = 12.007057 kcal Electronic energy + Delta-G solvation = -17401.174470 eV Core-core repulsion = 14619.222711 eV Total energy + Delta-G solvation = -2781.951760 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.17520 -38.06330 -35.17811 -34.27588 -31.48838 -30.16652 -28.85171 -26.70163 -25.70137 -23.62480 -22.20253 -21.92533 -20.03728 -18.13879 -16.86487 -16.66130 -15.87844 -15.69879 -15.51190 -14.77546 -14.58283 -13.89383 -13.71351 -13.54811 -13.31735 -13.13805 -12.77070 -12.50660 -11.91943 -11.75411 -11.52696 -11.15414 -10.85627 -10.81222 -10.72188 -10.67067 -10.19277 -10.01393 -8.98058 -8.36520 -8.22030 -8.15204 -7.86844 -7.51868 -6.19892 -4.03416 1.32412 1.44819 1.78897 1.83263 3.15736 3.47920 3.49040 3.67864 3.90397 4.22796 4.34513 4.49448 4.60921 4.95240 4.96383 5.08737 5.16142 5.25146 5.35378 5.43402 5.65358 5.78237 5.90524 6.06758 6.09139 6.41885 6.60814 6.81889 6.85949 7.12199 7.35380 7.62029 7.94565 8.26143 8.62370 8.73014 9.03081 9.80048 11.20087 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.032113 B = 0.004105 C = 0.003945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.703000 B = 6819.124100 C = 7095.306327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.039 3.961 3 Si 1.064 2.936 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.608 4.608 8 H 0.047 0.953 9 C 0.236 3.764 10 H 0.040 0.960 11 N -0.828 5.828 12 C -0.027 4.027 13 C -0.152 4.152 14 C -0.084 4.084 15 C -0.231 4.231 16 C 0.118 3.882 17 O -0.297 6.297 18 C 0.083 3.917 19 C -0.107 4.107 20 S -0.268 6.268 21 C -0.082 4.082 22 C -0.148 4.148 23 H 0.290 0.710 24 H 0.303 0.697 25 H 0.327 0.673 26 H 0.119 0.881 27 H 0.116 0.884 28 H 0.118 0.882 29 H 0.119 0.881 30 H 0.117 0.883 31 H 0.102 0.898 32 H 0.105 0.895 33 H 0.117 0.883 34 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.640 -15.212 -2.581 17.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.171 4.171 3 Si 0.893 3.107 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.216 1.216 7 C -0.647 4.647 8 H 0.065 0.935 9 C 0.127 3.873 10 H 0.058 0.942 11 N -0.356 5.356 12 C -0.030 4.030 13 C -0.171 4.171 14 C -0.103 4.103 15 C -0.249 4.249 16 C 0.074 3.926 17 O -0.212 6.212 18 C 0.023 3.977 19 C -0.255 4.255 20 S -0.043 6.043 21 C -0.231 4.231 22 C -0.167 4.167 23 H 0.102 0.898 24 H 0.113 0.887 25 H 0.140 0.860 26 H 0.137 0.863 27 H 0.134 0.866 28 H 0.136 0.864 29 H 0.137 0.863 30 H 0.135 0.865 31 H 0.121 0.879 32 H 0.124 0.876 33 H 0.136 0.864 34 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 8.951 -13.934 -3.282 16.883 hybrid contribution 0.439 -1.871 0.501 1.986 sum 9.389 -15.805 -2.782 18.593 Atomic orbital electron populations 1.70556 1.06828 1.32805 1.42149 1.25629 0.96585 1.01810 0.93076 0.83640 0.74931 0.75746 0.76381 1.20862 1.21629 1.21645 1.21643 0.93411 0.90261 1.59386 0.93495 1.18420 0.88108 0.90417 0.90379 0.94195 1.59462 1.28494 1.42329 1.05291 1.21386 0.95900 0.94420 0.91291 1.20924 0.99178 0.98197 0.98754 1.20827 0.97089 0.95448 0.96891 1.20952 1.06140 1.04782 0.93052 1.18980 0.95698 0.93622 0.84347 1.86173 1.65395 1.39444 1.30143 1.23950 0.87819 0.86154 0.99744 1.25103 0.99565 0.95761 1.05112 1.89002 1.11776 1.17758 1.85741 1.24604 0.95583 1.00533 1.02334 1.20407 1.00254 0.96517 0.99534 0.89753 0.88682 0.85992 0.86270 0.86569 0.86397 0.86348 0.86489 0.87919 0.87637 0.86449 0.85646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.45 13.51 55.43 0.75 -25.70 16 2 C 0.04 1.10 5.39 -17.82 -0.10 1.00 16 3 Si 1.06 25.00 29.90 -169.99 -5.08 19.92 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.61 -16.63 8.70 -34.44 -0.30 -16.93 16 8 H 0.05 1.31 7.74 -52.49 -0.41 0.90 16 9 C 0.24 5.66 2.47 -70.01 -0.17 5.48 16 10 H 0.04 1.04 7.87 -51.93 -0.41 0.63 16 11 N -0.83 -18.37 7.62 -6.65 -0.05 -18.42 16 12 C -0.03 -0.56 4.88 -104.64 -0.51 -1.07 16 13 C -0.15 -2.78 9.29 -39.56 -0.37 -3.14 16 14 C -0.08 -1.30 10.04 -39.61 -0.40 -1.70 16 15 C -0.23 -3.39 9.00 -39.43 -0.35 -3.74 16 16 C 0.12 1.93 6.68 -39.21 -0.26 1.66 16 17 O -0.30 -4.24 10.10 -19.41 -0.20 -4.43 16 18 C 0.08 0.88 3.26 -26.69 -0.09 0.79 16 19 C -0.11 -1.05 7.79 37.18 0.29 -0.76 16 20 S -0.27 -2.74 24.80 -107.50 -2.67 -5.40 16 21 C -0.08 -0.75 7.79 37.18 0.29 -0.46 16 22 C -0.15 -2.83 9.61 -39.43 -0.38 -3.20 16 23 H 0.29 8.59 6.39 -40.82 -0.26 8.33 16 24 H 0.30 5.91 9.06 -39.29 -0.36 5.55 16 25 H 0.33 6.95 7.33 -39.30 -0.29 6.66 16 26 H 0.12 2.13 6.66 -52.49 -0.35 1.78 16 27 H 0.12 1.46 8.06 -52.48 -0.42 1.04 16 28 H 0.12 1.39 5.97 -52.49 -0.31 1.07 16 29 H 0.12 1.16 6.08 -51.93 -0.32 0.84 16 30 H 0.12 1.15 8.14 -51.93 -0.42 0.72 16 31 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.12 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.13 2.40 8.03 -52.49 -0.42 1.98 16 LS Contribution 297.90 15.07 4.49 4.49 Total: -1.00 -30.09 297.90 -9.13 -39.23 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: -4.03 Total: 12.41 kcal Atomic # 6 Polarization: -19.74 SS G_CDS: -2.35 Total: -22.09 kcal Atomic # 7 Polarization: -44.82 SS G_CDS: 0.70 Total: -44.13 kcal Atomic # 8 Polarization: -4.24 SS G_CDS: -0.20 Total: -4.43 kcal Atomic # 14 Polarization: 25.00 SS G_CDS: -5.08 Total: 19.92 kcal Atomic # 16 Polarization: -2.74 SS G_CDS: -2.67 Total: -5.40 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.09 -9.13 -39.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259943677.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.235 kcal (2) G-P(sol) polarization free energy of solvation -30.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds