Wall clock time and date at job start Mon Mar 30 2020 06:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00363 * 2 1 4 4 H 1.48506 * 109.46978 * 0.02562 * 3 2 1 5 5 H 1.48504 * 109.47270 * 119.99879 * 3 2 1 6 6 H 1.48500 * 109.47402 * 240.00340 * 3 2 1 7 7 C 1.37880 * 120.00087 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00372 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99762 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.47369 * 60.00004 * 9 7 2 11 11 N 1.46902 * 109.47090 * 299.99790 * 9 7 2 12 12 C 1.50701 * 109.47322 * 180.02562 * 9 7 2 13 13 C 1.38288 * 119.97522 * 79.99238 * 12 9 7 14 14 C 1.38242 * 120.11214 * 180.02562 * 13 12 9 15 15 C 1.38163 * 120.05719 * 359.96040 * 14 13 12 16 16 C 1.38711 * 119.94583 * 0.02562 * 15 14 13 17 17 O 1.35896 * 120.05954 * 180.02562 * 16 15 14 18 18 C 1.42908 * 116.99778 * 5.93115 * 17 16 15 19 19 C 1.53042 * 113.15084 * 257.94378 * 18 17 16 20 20 S 1.81429 * 89.88798 * 211.85340 * 19 18 17 21 21 C 1.53046 * 113.14862 * 157.56761 * 18 17 16 22 22 C 1.38124 * 119.97139 * 259.72799 * 12 9 7 23 23 H 0.97004 * 119.99766 * 180.02562 * 1 2 3 24 24 H 1.00900 * 110.99764 * 176.04313 * 11 9 7 25 25 H 1.00891 * 111.00284 * 299.99987 * 11 9 7 26 26 H 1.08001 * 119.94319 * 359.97438 * 13 12 9 27 27 H 1.08006 * 119.97018 * 179.97438 * 14 13 12 28 28 H 1.08001 * 120.02674 * 180.02562 * 15 14 13 29 29 H 1.09002 * 112.49288 * 27.78448 * 18 17 16 30 30 H 1.08993 * 113.15065 * 327.11209 * 19 18 17 31 31 H 1.08994 * 113.14570 * 96.59690 * 19 18 17 32 32 H 1.08996 * 113.14727 * 263.40597 * 21 18 17 33 33 H 1.08993 * 113.14851 * 32.85445 * 21 18 17 34 34 H 1.08000 * 120.02747 * 359.97438 * 22 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.6240 -2.5567 -0.8903 11 7 0.4069 -2.5772 1.1993 12 6 2.2302 -3.6447 -0.0005 13 6 2.8374 -4.0346 1.1791 14 6 3.7365 -5.0847 1.1823 15 6 4.0301 -5.7479 0.0063 16 6 3.4222 -5.3589 -1.1783 17 8 3.7089 -6.0100 -2.3362 18 6 4.5431 -7.1664 -2.2408 19 6 5.9907 -6.9002 -2.6600 20 16 6.1237 -8.6039 -3.2696 21 6 4.3806 -8.1246 -3.4231 22 6 2.5164 -4.3078 -1.1779 23 1 -0.4850 -0.8401 0.0004 24 1 -0.1571 -3.4138 1.1907 25 1 0.9652 -2.5260 2.0381 26 1 2.6094 -3.5173 2.0994 27 1 4.2097 -5.3870 2.1049 28 1 4.7323 -6.5685 0.0095 29 1 4.4604 -7.6616 -1.2733 30 1 6.0778 -6.1545 -3.4501 31 1 6.6499 -6.6942 -1.8169 32 1 3.6913 -8.9439 -3.2190 33 1 4.1567 -7.6149 -4.3601 34 1 2.0384 -4.0060 -2.0981 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259943677.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:12 Heat of formation + Delta-G solvation = -6.899880 kcal Electronic energy + Delta-G solvation = -17401.994337 eV Core-core repulsion = 14619.222711 eV Total energy + Delta-G solvation = -2782.771626 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.34932 -39.35652 -36.64361 -35.50502 -33.42386 -31.59509 -30.24314 -27.66546 -27.41219 -25.07587 -23.52578 -23.36321 -21.32759 -19.47020 -18.59128 -17.71239 -17.12589 -16.89907 -16.59886 -16.24326 -15.86229 -15.54059 -15.25965 -14.97423 -14.50952 -14.14201 -14.04217 -13.79131 -13.63492 -13.06244 -12.65080 -12.56872 -12.43546 -12.34451 -11.92285 -11.82340 -11.71937 -11.56379 -10.84788 -10.48005 -9.71296 -9.38629 -9.09969 -9.00445 -8.38399 -6.24800 0.43164 0.45297 0.62565 0.66450 1.56861 1.64162 1.83399 2.13254 2.62836 2.83751 3.15210 3.32149 3.55226 3.67689 3.89117 4.00246 4.17780 4.23361 4.24529 4.29074 4.41225 4.47148 4.54847 4.69668 4.70961 5.00766 5.14183 5.30695 5.48648 5.77383 5.81446 5.94970 6.22280 6.41142 6.67350 6.78029 7.04540 7.66393 8.98152 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.032113 B = 0.004105 C = 0.003945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.703000 B = 6819.124100 C = 7095.306327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.010 4.010 3 Si 1.109 2.891 4 H -0.285 1.285 5 H -0.274 1.274 6 H -0.277 1.277 7 C -0.616 4.616 8 H 0.036 0.964 9 C 0.239 3.761 10 H 0.005 0.995 11 N -0.834 5.834 12 C -0.052 4.052 13 C -0.166 4.166 14 C -0.073 4.073 15 C -0.216 4.216 16 C 0.126 3.874 17 O -0.307 6.307 18 C 0.076 3.924 19 C -0.103 4.103 20 S -0.283 6.283 21 C -0.075 4.075 22 C -0.174 4.174 23 H 0.278 0.722 24 H 0.318 0.682 25 H 0.332 0.668 26 H 0.117 0.883 27 H 0.155 0.845 28 H 0.158 0.842 29 H 0.135 0.865 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.122 0.878 33 H 0.120 0.880 34 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.767 -16.859 -1.885 20.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.214 4.214 3 Si 0.932 3.068 4 H -0.211 1.211 5 H -0.199 1.199 6 H -0.203 1.203 7 C -0.654 4.654 8 H 0.054 0.946 9 C 0.129 3.871 10 H 0.023 0.977 11 N -0.363 5.363 12 C -0.054 4.054 13 C -0.184 4.184 14 C -0.091 4.091 15 C -0.235 4.235 16 C 0.081 3.919 17 O -0.222 6.222 18 C 0.017 3.983 19 C -0.251 4.251 20 S -0.058 6.058 21 C -0.223 4.223 22 C -0.193 4.193 23 H 0.090 0.910 24 H 0.130 0.870 25 H 0.146 0.854 26 H 0.135 0.865 27 H 0.172 0.828 28 H 0.175 0.825 29 H 0.152 0.848 30 H 0.133 0.867 31 H 0.133 0.867 32 H 0.140 0.860 33 H 0.138 0.862 34 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 11.092 -15.614 -2.593 19.328 hybrid contribution -0.159 -1.536 0.217 1.559 sum 10.933 -17.151 -2.376 20.477 Atomic orbital electron populations 1.70670 1.07733 1.32157 1.44832 1.26966 0.96687 1.05389 0.92313 0.83044 0.74148 0.72107 0.77457 1.21088 1.19904 1.20292 1.21943 0.93084 0.92052 1.58321 0.94571 1.18066 0.88410 0.91024 0.89567 0.97674 1.59206 1.28681 1.43510 1.04867 1.20982 0.96831 0.94556 0.93050 1.20973 1.00254 0.99603 0.97612 1.21216 0.95435 0.93685 0.98747 1.21365 1.05431 1.04898 0.91771 1.18896 0.94601 0.92676 0.85712 1.86171 1.66009 1.40607 1.29383 1.24303 0.87644 0.85137 1.01177 1.25079 0.99160 0.95411 1.05489 1.89134 1.12795 1.17954 1.85910 1.24605 0.95177 1.00615 1.01900 1.20325 1.02065 0.98412 0.98532 0.91005 0.87031 0.85377 0.86493 0.82758 0.82485 0.84777 0.86715 0.86741 0.85973 0.86201 0.87394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.18 13.51 21.45 0.29 -55.89 16 2 C -0.01 -0.56 5.39 84.66 0.46 -0.11 16 3 Si 1.11 50.74 29.90 68.60 2.05 52.79 16 4 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 5 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 6 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 7 C -0.62 -34.57 8.70 25.60 0.22 -34.35 16 8 H 0.04 2.06 7.74 -2.91 -0.02 2.03 16 9 C 0.24 11.94 2.47 43.42 0.11 12.05 16 10 H 0.01 0.30 7.87 -2.39 -0.02 0.28 16 11 N -0.83 -38.11 7.62 -174.95 -1.33 -39.44 16 12 C -0.05 -2.16 4.88 -19.88 -0.10 -2.26 16 13 C -0.17 -5.88 9.29 22.28 0.21 -5.67 16 14 C -0.07 -2.00 10.04 22.25 0.22 -1.78 16 15 C -0.22 -5.53 9.00 22.36 0.20 -5.33 16 16 C 0.13 3.90 6.68 22.51 0.15 4.05 16 17 O -0.31 -8.16 10.10 -92.38 -0.93 -9.09 16 18 C 0.08 1.37 3.26 30.62 0.10 1.47 16 19 C -0.10 -1.73 7.79 72.00 0.56 -1.17 16 20 S -0.28 -5.06 24.80 -56.49 -1.40 -6.46 16 21 C -0.07 -1.16 7.79 72.00 0.56 -0.60 16 22 C -0.17 -6.77 9.61 22.37 0.21 -6.55 16 23 H 0.28 17.19 6.39 -92.71 -0.59 16.59 16 24 H 0.32 12.77 9.06 -89.69 -0.81 11.96 16 25 H 0.33 14.40 7.33 -89.70 -0.66 13.74 16 26 H 0.12 4.11 6.66 -2.91 -0.02 4.09 16 27 H 0.15 3.07 8.06 -2.91 -0.02 3.05 16 28 H 0.16 2.79 5.97 -2.91 -0.02 2.77 16 29 H 0.13 2.01 6.08 -2.39 -0.01 2.00 16 30 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.11 4.41 8.03 -2.91 -0.02 4.39 16 Total: -1.00 -66.58 297.90 1.42 -65.16 By element: Atomic # 1 Polarization: 33.33 SS G_CDS: -0.16 Total: 33.17 kcal Atomic # 6 Polarization: -43.15 SS G_CDS: 2.91 Total: -40.24 kcal Atomic # 7 Polarization: -94.29 SS G_CDS: -1.04 Total: -95.33 kcal Atomic # 8 Polarization: -8.16 SS G_CDS: -0.93 Total: -9.09 kcal Atomic # 14 Polarization: 50.74 SS G_CDS: 2.05 Total: 52.79 kcal Atomic # 16 Polarization: -5.06 SS G_CDS: -1.40 Total: -6.46 kcal Total: -66.58 1.42 -65.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259943677.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.258 kcal (2) G-P(sol) polarization free energy of solvation -66.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds