Wall clock time and date at job start Mon Mar 30 2020 06:31:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.34635 * 126.10556 * 2 1 4 4 C 1.31035 * 108.61901 * 180.02562 * 3 2 1 5 5 N 1.38344 * 125.71072 * 179.97438 * 4 3 2 6 6 C 1.38186 * 120.00096 * 179.97438 * 5 4 3 7 7 N 1.29627 * 125.01962 * 179.71788 * 6 5 4 8 8 C 1.33695 * 115.86321 * 179.84948 * 7 6 5 9 9 C 1.41057 * 122.83358 * 180.22635 * 8 7 6 10 10 H 1.08003 * 119.99820 * 174.30257 * 9 8 7 11 11 C 1.39601 * 120.00446 * 354.29934 * 9 8 7 12 12 N 1.31091 * 119.99987 * 6.19950 * 11 9 8 13 13 Si 1.86800 * 120.00210 * 186.19852 * 11 9 8 14 14 H 1.48505 * 109.47113 * 94.98654 * 13 11 9 15 15 H 1.48505 * 109.46959 * 214.98026 * 13 11 9 16 16 H 1.48494 * 109.47181 * 334.98272 * 13 11 9 17 17 C 1.37754 * 114.32842 * 0.43889 * 8 7 6 18 18 S 1.70967 * 108.97553 * 359.76847 * 17 8 7 19 19 O 1.34225 * 108.58452 * 359.97438 * 4 3 2 20 20 C 1.34174 * 126.10543 * 180.02562 * 2 1 3 21 21 C 1.50699 * 126.36326 * 359.97438 * 20 2 1 22 22 H 1.08992 * 109.47188 * 89.98029 * 1 2 3 23 23 H 1.09009 * 109.46891 * 209.97241 * 1 2 3 24 24 H 1.09002 * 109.47083 * 329.97260 * 1 2 3 25 25 H 0.97003 * 119.99552 * 359.97438 * 5 4 3 26 26 H 0.97002 * 120.00327 * 180.02562 * 12 11 9 27 27 H 1.08001 * 125.51245 * 179.79179 * 17 8 7 28 28 H 1.08996 * 109.47800 * 89.99443 * 21 20 2 29 29 H 1.09001 * 109.47104 * 209.99826 * 21 20 2 30 30 H 1.09006 * 109.47294 * 329.99751 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3004 1.0878 0.0000 4 6 3.5502 0.6940 -0.0006 5 7 4.6579 1.5228 -0.0012 6 6 5.9280 0.9785 -0.0012 7 7 7.0299 1.6612 -0.0071 8 6 8.1593 0.9458 -0.0028 9 6 9.4397 1.5378 -0.0034 10 1 10.3203 0.9200 0.0931 11 6 9.5686 2.9222 -0.1288 12 7 8.5011 3.6831 -0.1236 13 14 11.2623 3.6905 -0.3038 14 1 11.5702 3.8873 -1.7432 15 1 11.2848 5.0027 0.3911 16 1 12.2782 2.7924 0.3014 17 6 7.9671 -0.4182 -0.0023 18 16 6.2885 -0.7430 -0.0011 19 8 3.5759 -0.6480 -0.0003 20 6 2.2976 -1.0840 -0.0005 21 6 1.8437 -2.5210 -0.0006 22 1 -0.3633 0.0004 -1.0276 23 1 -0.3633 -0.8903 0.5135 24 1 -0.3633 0.8898 0.5143 25 1 4.5429 2.4860 -0.0017 26 1 8.5906 4.6450 -0.2111 27 1 8.7500 -1.1621 -0.0023 28 1 1.7338 -2.8674 -1.0282 29 1 2.5831 -3.1357 0.5128 30 1 0.8858 -2.5995 0.5136 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259952097.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:41 Heat of formation + Delta-G solvation = 72.712725 kcal Electronic energy + Delta-G solvation = -17075.065510 eV Core-core repulsion = 14192.205802 eV Total energy + Delta-G solvation = -2882.859708 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.063 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.01382 -38.14444 -35.76221 -34.94700 -33.13460 -32.08423 -29.21003 -28.65603 -25.66845 -25.15093 -22.82453 -22.01071 -20.55512 -19.17054 -18.44990 -16.73804 -16.73675 -16.00787 -15.48063 -15.17465 -14.45675 -13.86678 -13.77120 -13.32972 -13.17788 -13.10627 -12.94672 -12.29116 -12.05984 -11.66944 -11.58047 -11.49690 -11.13857 -10.76949 -10.48194 -10.31693 -10.21181 -9.69439 -9.24888 -8.28775 -8.24750 -7.77543 -6.86163 -6.59310 -4.41767 1.64152 2.10732 2.30368 2.43183 2.95527 3.08634 3.11818 3.13000 3.42719 3.75148 3.99034 4.25435 4.79962 4.93067 5.09635 5.33283 5.41148 5.43445 5.59668 5.69830 5.79118 5.87899 6.19857 6.28634 6.43160 6.99249 7.07435 7.14902 7.42965 7.47377 8.11940 8.20790 8.49694 8.82487 9.47075 10.29091 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.044636 B = 0.004817 C = 0.004364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.139167 B = 5811.481253 C = 6414.678808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.010 3.990 3 N -0.525 5.525 4 C 0.458 3.542 5 N -0.566 5.566 6 C 0.261 3.739 7 N -0.432 5.432 8 C 0.253 3.747 9 C -0.430 4.430 10 H 0.088 0.912 11 C 0.072 3.928 12 N -0.751 5.751 13 Si 0.913 3.087 14 H -0.270 1.270 15 H -0.277 1.277 16 H -0.261 1.261 17 C -0.483 4.483 18 S 0.029 5.971 19 O -0.198 6.198 20 C -0.084 4.084 21 C -0.057 4.057 22 H 0.072 0.928 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.443 0.557 26 H 0.274 0.726 27 H 0.143 0.857 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.909 -6.446 -0.011 13.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.109 4.109 3 N -0.265 5.265 4 C 0.158 3.842 5 N -0.211 5.211 6 C -0.111 4.111 7 N -0.154 5.154 8 C 0.130 3.870 9 C -0.464 4.464 10 H 0.106 0.894 11 C -0.151 4.151 12 N -0.374 5.374 13 Si 0.738 3.262 14 H -0.195 1.195 15 H -0.202 1.202 16 H -0.185 1.185 17 C -0.622 4.622 18 S 0.272 5.728 19 O -0.085 6.085 20 C -0.139 4.139 21 C -0.114 4.114 22 H 0.091 0.909 23 H 0.091 0.909 24 H 0.092 0.908 25 H 0.287 0.713 26 H 0.085 0.915 27 H 0.160 0.840 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -12.653 -6.024 -0.019 14.014 hybrid contribution 2.031 0.659 -0.108 2.138 sum -10.623 -5.365 -0.128 11.901 Atomic orbital electron populations 1.20067 0.86701 1.02992 1.02582 1.21216 0.97372 0.87329 1.04991 1.70663 0.97330 1.30314 1.28210 1.21024 0.87498 0.78246 0.97391 1.39425 0.97519 1.07385 1.76804 1.24443 0.88253 0.92742 1.05659 1.67486 0.95701 1.34098 1.18106 1.17621 0.90620 0.86452 0.92272 1.18945 0.91104 0.91762 1.44614 0.89390 1.25996 0.98490 0.97569 0.93019 1.70129 1.29674 1.05552 1.32090 0.86216 0.82074 0.78792 0.79137 1.19505 1.20191 1.18529 1.25155 0.95748 0.98981 1.42347 1.82874 1.04561 1.06534 1.78881 1.84511 1.30285 1.20984 1.72756 1.22776 0.79748 0.97950 1.13398 1.20131 1.01310 0.86734 1.03209 0.90896 0.90889 0.90785 0.71312 0.91520 0.83973 0.90398 0.90539 0.89528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.66 10.21 36.01 0.37 -0.29 16 2 C 0.01 0.16 7.10 -82.79 -0.59 -0.43 16 3 N -0.53 -9.44 11.34 -10.62 -0.12 -9.56 16 4 C 0.46 8.83 8.91 -86.83 -0.77 8.06 16 5 N -0.57 -11.64 5.51 -13.82 -0.08 -11.71 16 6 C 0.26 6.27 8.34 -88.14 -0.74 5.53 16 7 N -0.43 -11.75 8.53 -11.70 -0.10 -11.85 16 8 C 0.25 7.05 6.46 -86.16 -0.56 6.49 16 9 C -0.43 -11.77 9.22 -38.01 -0.35 -12.12 16 10 H 0.09 2.27 7.85 -52.48 -0.41 1.86 16 11 C 0.07 1.85 5.48 -17.36 -0.10 1.76 16 12 N -0.75 -20.11 11.71 55.53 0.65 -19.46 16 13 Si 0.91 18.97 29.56 -169.99 -5.03 13.94 16 14 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 15 H -0.28 -5.62 7.11 56.52 0.40 -5.21 16 16 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 17 C -0.48 -12.37 10.97 30.56 0.34 -12.03 16 18 S 0.03 0.67 20.48 -107.50 -2.20 -1.53 16 19 O -0.20 -3.67 8.16 3.80 0.03 -3.64 16 20 C -0.08 -1.25 7.38 -35.74 -0.26 -1.51 16 21 C -0.06 -0.55 10.21 36.01 0.37 -0.18 16 22 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.07 0.54 7.15 -51.92 -0.37 0.16 16 24 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.44 8.44 8.94 -40.82 -0.36 8.07 16 26 H 0.27 6.67 8.30 -40.82 -0.34 6.33 16 27 H 0.14 3.44 8.06 -52.49 -0.42 3.02 16 28 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.09 0.60 7.15 -51.93 -0.37 0.23 16 LS Contribution 280.92 15.07 4.23 4.23 Total: -1.00 -31.17 280.92 -7.67 -38.84 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -2.77 Total: 5.46 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: -2.29 Total: -4.73 kcal Atomic # 7 Polarization: -52.94 SS G_CDS: 0.35 Total: -52.59 kcal Atomic # 8 Polarization: -3.67 SS G_CDS: 0.03 Total: -3.64 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.03 Total: 13.94 kcal Atomic # 16 Polarization: 0.67 SS G_CDS: -2.20 Total: -1.53 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -31.17 -7.67 -38.84 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259952097.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.554 kcal (2) G-P(sol) polarization free energy of solvation -31.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds